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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoFB_comp9710_c0_seq1
Scaffold_idBomo_Chr5
NCBI non-redundant
(nr)		hypothetical_protein_KGM_17243_[Danaus_plexippus]
Ontology
GO:0000166 F nucleotide binding
GO:0000178 C exosome (RNase complex)
GO:0000398 P mRNA splicing, via spliceosome
GO:0000460 P maturation of 5.8S rRNA
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003724 F RNA helicase activity
GO:0004386 F helicase activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005730 C nucleolus
GO:0006364 P rRNA processing
GO:0006397 P mRNA processing
GO:0006401 P RNA catabolic process
GO:0008380 P RNA splicing
GO:0016787 F hydrolase activity
GO:0044822 F RNA binding
GO:0071013 C catalytic step 2 spliceosome
Transcript
Level		FPKM:8.48 TPM:9.29
ORF EntryO_BomoFB10114_complete:A_BomoFB_comp9710_c0_seq1
Sequence
(Nucleotide)
GTATAATTTCGGTTCTTCTTAAAACTACATATAAAGACTGGCTGCGAACACAATGTCCCT
CTTGAGCATTTTGATCGCGTCACTGAATTTATTCTCCAAGTCGGTGTTGCCAATGTTCTT
GGCAGCCTGGCACAGCTGTCGCAACACCTCCTCCAAACGTCTCATACATCTTATTATTGA
ACCTTCAAAAACATCAGTCATCTTGCATATCTGCAAGAACGAAGCTCCTTTGGCCCATGA
CAGGACCACGTCCATGAGTGTACATTTAAATTTACTAACGTAAGTATCTTCATCCAAATC
CATTTTAGAATCGATCGATACCTTTGCTATTCGTCGGGCATATTCCTGTAGTTGCCTGAG
CACGCCGCGCAGCTCCTCGCCGGAGACGCTGGCCTGCGTGGAGTTCTCGTCGCAAACGAA
GCAGCTGATCAACGCCGCGCTCTGCTCCGGAGACAGCGCGTTGAACACCCCGTTGAATAT
CAACTCCGTTAGCAGCAGTTCGTCCGCACTGCTGAGCTCGCAGGCGATGCGTCCCTTCAT
CTCGATGACGTCGGCGGCGGTGCAGTAGCCGAGCCGCCTCAGCACCCGTTTTCTCTTCTT
CAGCTCGTCCATCTGCAGTATGCTCTTCGCCTTCTTCAGTTCCGCTTTAGCGTTCTGTAG
CTCTTCATATAACTCTTGTTTCTTGTCGTAAGCAGCTGTCAGGGCGCTTCTGTTTTTGTC
TGTATGGATCGGATGTGAGTATAGTCTTTCTTCCAATAACTTGATTCTATCGACGCATTG
TTTAAACACTGAGTCATTAATTTTCATATCATTAATGGGATTCAACAGCGGGGGACCATC
GGGGAACCTCTTTTTCACCTCGCCTATAGTCTTCAATACAGATTTCCGATTGTCCGAAGG
CCTCAAGTCCTTAGGATAGTACACCCGAAGAGAACTGATCTGGTATATTAGTGTGTGTAC
GACTGGAACCACTTGTACGTCGCCAGACTCGCCGGGCGGACACGGCACGTTGGTCTCGCC
GTCGCCGCCGGTCGCCGTCTTCACGTGCAGTAGGATGTCGACAATAATGGCGGGCTCGGC
CGTCAAAGGATTCTCTTCTTGTCCTTTCTTGCCTTTGTTCGATTTATGTCTGAAGTTCAC
TATGATGCCCCAGTCGTATTCGTATTTCTCTGTTTTCACCTTGACAAGTCTTCCCGGTTG
CAAAAAAGGCTTCAAGTACTCCGGCTTAGTTATGAACGACCGAAACTGGTCCCCGAGCAA
ATCTAGCTGAGTTCTGATGGTGGAGTATGAAGCTACGGAGTTCTCCTCGTTAACGGACAG
GGCGTCGTATTGTTTCTGTTTTGCTTTGACCTTGTCTATCAGATCCGGTATGGCTGCTTG
ATTCTGAAACTGGAAGAAACTTCTTTCCAGCATATATTCCGGATTGATTTCCTCTACACG
CAGTAGATTAAGAACCATATTATAAGTGAGATGGAATGCAGAATTAATAGGGTCAGCTTT
CCCTTGCACCATGCCTTTGACAACAGTGGGCGTAACCTTCTCGTCGATCATCAATATAAC
GATACCCTTGTCGTCGAGACCTCTCCGACCAGCGCGACCAGACATCTGAATATATTCACC
TGACGATATAAATCTAACTTCCTTCCCGTCAAACTTTTGACAGTTGGTAAACACTACCGT
TCTCGCAGGCATGTTCAATCCCATAGCAAATGTTTCAGTAGCAAATAAAGCCTTGATGAG
TCCTAAGCCGAATAATATTTCAATAGTTTCCTTCAGTATAGGCAGTAGACCTCCATGATG
TATGCCAATGCCGCGCCTCAACAAAGGTATAACGTTCTCTACTTGTGGTAATTTCCGATC
CTCTTCACTTAAAACATCCATTGCGTTGCTAAACACTTCGTCCACTAGTTTTTTTTCTTC
AATTGTGTTGAAGTCCAGTTTCGCCATCTGTAGGGCATATAGTTCGCAATCCTTTTTACT
GAAGCTGAATATGATCACGGGAGCGAAATTTCTTTCCATAATCATTTTGACAATGTTAAA
AATATTGGTCTGATTTTTATCCCGGGGTCCGCCGCGTCTACCACGTTGGTCGCCTTTTGC
TGCTTCACCTGCATTGTTCAGCACTGTCATTGCTGTGTTGAAGTTATCTTCCTTGAATAT
ACCCTTTTCATCAACAACCAAATGTATTCCATCACCACCGGCTGGGAAAATGTAGTGTTG
CAGTGGAGTGGGTCTGTATTCTGTATAAATGACGTGACAAGGCTGGGAATGCAAGCGACA
GACCCACTCGGCAAACTGACGTGCATTAGGTATAGTTGCAGACAAAAATACATAATGCAC
ATTGTCCGGCAGAAGGATGAGTGTTTCTTCCCAAACGACACCTCTCTCCTTATCTCTCAT
GTAATGAATCTCATCAAACACAACCCAACCAACTTCTCTCATAATTTCTGAACCTCTATA
CAACATGTTCCTGAGAATCTCAGTTGTCATGATAAGACATGAAGCAGAGGGATTGATAGT
TACATCACCAGTTATTAAACCAACATCATGAAACTCCTCTGAGAACTCTCTATATTTTTG
ATTCGAAAGAGCTTTAATAGGGGTTGTGTATATTACTCTCTGCTTGTTTTTTAGTGATAG
AGCTATGGCATACTCAGCAACCACTGTTTTGCCAGCAGACGTGTGAGCTGATACAAGTAC
AGATTGTAAATTATCTATACACAATATTGCTTCTTTTTGAAACGGATCCAATATGAAACT
GTACTGCTTTACAGGTTCAGTTGTCAGTGGTAAAAGAGGAGCATATTCCTGATTAGGTGG
TATTGCCACTTCATGTGTACAGCCCTCGTGAGTTTCTAGCGTGTGTATCACTATACGAGA
TTGGAGCAGATCAACATTTATGTCGGTAATCAATTCAGAGTCTTCCTCTTCTTCGCGAGG
CTTTTTTGATACAGAGGTATCAGCGTACTGGATGTCATCATGTGCACGCTTATTTCCAGC
AGCAGTCAACTCTTCCAAGTTTGGTTTTTCAACATTTTTAACATTTGGCAGCTGAATCGC
AGCTTCAGTTATTGGTGTTTCATCAAAACAGTCAAACAAACTATTTATGTCAGACATTTT
AAACAGGTAACTTTGCAGATTTTCAATATTGATTTAGTACATTCCATTTATCAATTTATC
AGTTTAGATTTTAGAGTACATTTCTGATTCTCTTTCAGATTTTG
(3224 bp)

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