SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoFB_comp3010_c0_seq2
Scaffold_idBomo_Chr6
NCBI non-redundant
(nr)		PREDICTED:_pre-mRNA-splicing_factor_18_isoform_X2_[Bombyx_mori]
Ontology
GO:0000350 P generation of catalytic spliceosome for second transesterification step
GO:0000386 F second spliceosomal transesterification activity
GO:0005634 C nucleus
GO:0005681 C spliceosomal complex
GO:0005682 C U5 snRNP
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0016607 C nuclear speck
GO:0046540 C U4/U6 x U5 tri-snRNP complex
GO:0071021 C U2-type post-spliceosomal complex
GO:0071048 P nuclear mRNA surveillance
Transcript
Level		FPKM:1.24 TPM:1.36
ORF EntryO_BomoFB1242_5prime_partial:A_BomoFB_comp3010_c0_seq2
Sequence
(Nucleotide)
ATTTTTTAGAAACTGTAATATTTTCATTTTAATTCAACTGATTGATTTATACGTGCTATG
TACCACAATCAATAATGGATATTTTAAAGGCAGAAATTGCAAAAAAACGTAAATTACTTG
AAGAAAAGAAAATTATTGATCCATCAAACAAGAAAAAATACTTCAAGAGAGGTGAGCTCT
TAGCGAAAGAACAAGAAGAATATTTACGGAAATATGGACCCAAAGTACAGGAGCCTGAAG
AAAAACAACTTGAAAAGGTAGAAACAGATCAAAATTATGCGAATGTAGAAACAGAACAGA
AAGAGACTCCAGCACTTCCTCGAAATGAAGTTATAAAGAGATTGAGAGAAAGAGGTCATC
CAATACTATTGTTTGCTGAAACTGAAATTCAGTCCTTTAAGAGATTAAGAAGAATTGAAA
TTCAAGAACCAGAAGTTAACAGGGGCTTCCGGAATGACTTCCAAGAAGCGATGGAGAAAG
TCGATGAAGCATATTTGAATGAAATATTGGCATTAGGAACTCAGAATGAAGGTGAAAATT
CGTCCAAAGAAGATGCACTTGATGATTCTATTACATATGAAACCATTCAAGAAATGGCAA
AAACAATGGGACAAGGCGATAGAAACCATGATATGAATGTAATCATGACATTATTGCAAT
TCTTGCTAAAGTTGTGGGGTCAGCAACTGAGTTCTGCTGCAGCAGGACAGAAAGCAGCAA
TCAAGCATAAAATGACGAGAGCCACATACACCCAAACACAGGCCAGTGACGCATATCTTC
AAATGGCGATTGGCAATGCGCCATGGCCAATCGGTGTAACCATGGTGGGTATTCACGCCC
GTACAGGACGGGAGAAAATCTTCTCTAAGAACGTAGCACACGTTATGAACGACGAAACTC
AAAGAAAATACATTCAAGCGCTTAAACGTCTTATGACTAAATGTCAGGAGTATTTCCCTA
CAGATCCATCTAGATGTGTGGAGTATACTACTATCAGATA
(1000 bp)

- SilkBase 1999-2023 -