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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoFB_comp3010_c0_seq1
Scaffold_idBomo_Chr6
NCBI non-redundant
(nr)		PREDICTED:_pre-mRNA-splicing_factor_18_isoform_X1_[Bombyx_mori]
Ontology
GO:0000350 P generation of catalytic spliceosome for second transesterification step
GO:0000386 F second spliceosomal transesterification activity
GO:0005634 C nucleus
GO:0005681 C spliceosomal complex
GO:0005682 C U5 snRNP
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0016607 C nuclear speck
GO:0046540 C U4/U6 x U5 tri-snRNP complex
GO:0071021 C U2-type post-spliceosomal complex
GO:0071048 P nuclear mRNA surveillance
Transcript
Level		FPKM:2.01 TPM:2.20
ORF EntryO_BomoFB1240_3prime_partial:A_BomoFB_comp3010_c0_seq1
Sequence
(Nucleotide)
ATTTTTTAGAAACTGTAATATTTTCATTTTAATTCAACTGATTGATTTATACGTGCTATG
TACCACAATCAATAATGGATATTTTAAAGGCAGAAATTGCAAAAAAACGTAAATTACTTG
AAGAAAAGAAAATTATTGATCCATCAAACAAGAAAAAATACTTCAAGAGAGGTGAGCTCT
TAGCGAAAGAACAAGAAGAATATTTACGGAAATATGGACCCAAAGTACAGGAGCCTGAAG
AAAAACAACTTGAAAAGGTAGAAACAGATCAAAATTATGCGAATGTAGAAACAGAACAGA
AAGAGACTCCAGCACTTCCTCGAAATGAAGTTATAAAGAGATTGAGAGAAAGAGGTCATC
CAATACTATTGTTTGCTGAAACTGAAATTCAGTCCTTTAAGAGATTAAGAAGAATTGAAA
TTCAAGAACCAGAAGTTAACAGGGGCTTCCGGAATGACTTCCAAGAAGCGATGGAGAAAG
TCGATGAAGCATATTTGAATGAAATATTGGCATTAGGAACTCAGAATGAAGGTGAAAATT
CGTCCAAAGAAGATGCACTTGATGATTCTATTACATATGAAACCATTCAAGAAATGGCAA
AAACAATGGGACAAGGCGATAGAAACCATGATATGAATGTAATCATGACATTATTGCAAT
TCTTGCTAAAGTTGTGGGGTCAGCAACTGAGTTCTGCTGCAGCAGGACAGAAAGCAGCAA
TCAAGCATAAAATGACGAGAGCCACATACACCCAAACACAGGTTTATCTCAAGCCTCTAA
TGAGAAAACTAAAAAAGAAAAACTTGCCTGAAGACATCTGTGACAGTTTAACAGAAATAA
CAAAACATCTGTTAGATAGAAACTACATTATGGCCAGTGACGCATATCTTCAAATGGCGA
TTGGCAATGCGCCATGGCCAATCGGTGTAACCATGGTGGGTATTCACGCCCGTACAGGAC
GGGAGAAAATCTTCTCTAAGAACGTAGCACACGTTATGAACGACGAAACTCAAAGAAAAT
ACATTCAAGCGCTTAAACGTCTTATGACTAAATGTCAGGAGTATTTCCCTACAGATCCAT
CTAGATGTGTGGAGTATACTACTATCAGATA
(1111 bp)

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