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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoFB_comp2925_c0_seq1
Scaffold_idBomo_Chr17
NCBI non-redundant
(nr)		hypothetical_protein_KGM_10653_[Danaus_plexippus]
Ontology
GO:0000166 F nucleotide binding
GO:0001075 F RNA polymerase II general transcription initiation factor activity
GO:0001129 F obsolete RNA polymerase II transcription factor activity, TBP-class protein binding, involved in preinitiation complex assembly
GO:0003677 F DNA binding
GO:0004402 F histone acetyltransferase activity
GO:0004672 F protein kinase activity
GO:0004674 F protein serine/threonine kinase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005669 C transcription factor TFIID complex
GO:0005730 C nucleolus
GO:0006351 P transcription, DNA-templated
GO:0006352 P DNA-templated transcription, initiation
GO:0006355 P regulation of transcription, DNA-templated
GO:0006367 P transcription initiation from RNA polymerase II promoter
GO:0006461 P protein-containing complex assembly
GO:0006468 P protein phosphorylation
GO:0007049 P cell cycle
GO:0007221 P positive regulation of transcription of Notch receptor target
GO:0008134 F transcription factor binding
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016573 P histone acetylation
GO:0016740 F transferase activity
GO:0022008 P neurogenesis
GO:0043565 F sequence-specific DNA binding
GO:0044212 F transcription cis-regulatory region binding
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046425 P regulation of receptor signaling pathway via JAK-STAT
GO:0051123 P RNA polymerase II preinitiation complex assembly
GO:0051726 P regulation of cell cycle
GO:0060261 P positive regulation of transcription initiation from RNA polymerase II promoter
Transcript
Level		FPKM:4.93 TPM:5.40
ORF EntryO_BomoFB1138_complete:A_BomoFB_comp2925_c0_seq1
Sequence
(Nucleotide)
GCCCATGGACTTCAGCAATGCCAGCGCAGAGCCAAGCCGCTGCCTAACGTTTACTCCACT
CTCCAACTCCATTTAAATGTTTACTGTTTGAAGACTTTCGAGGAAATTTCTCGAAAACGT
TTATCTTTTCTCATCACCACCATCTTTACCGCTTAGAACCACAACCCATCTTCTGCTTCT
TCCTCGCTATCAGTCACCTGGAGATCATCTTGAATGGCTGGATCGGGCTGCCAATTCTCT
GGCGGCTCCTCCTTGAACTGCTGAGGCGGCTCCATGTGACTCTCTATCATCGCGGGAACC
ATGTTCATGTCAGGTTCGATCGGCTCTTCCTTTACGATGGACGGGAAAGTAAAGTCAGTC
GGCTGATCGAGGTCCACGAAGTCGTCCGAAGGCGGAGGCAGGTCGTCCGTCACTTCTCGT
TTGATCGTCGTCGGGAAATCGGACGGATCCGATATCATGCTCGGCTCGTCCAGCGTTGTA
TCTTCTGGCTTGACACAGAGTTGAATGGTGTCAACGATGTCTTTCTGTTCCACCTCTTCC
AATTCCGAACTACCACTGTCCGAGTATTGAAGATCTTCTTCCAAACTGTTCTGATCTTTA
CGTGGTCTGCCTCGTTTTCTAGGAGTAGCACCGTCTGATGTTGAGGGCTTGTGTTTCCGC
GGGCGCCCCCGGCCGCGCTTCTCGTCCGTGGGGGGGAGGTCGTCGCCCTCCGGCTCCGAG
TGCTGGGCGTCTTCGAGCATTTTCTGCTGAACCCTAACTATGTTCGCTTCCAACTGACTT
ACATGCTCGTCGAACTGGCCTAAAGCGTCCTGCGTGACCTTCAATACGGCCTCAGCTTGT
CTCGTGAACTGAGAGTTCGGGCCGTTGTAAGCCCGACAATTATCCACCAAAAGTTGTACG
TCCCGGAGGAATTCTTCACGGCTGTGATATTTGTGAGCTTGAATCTTCTTTCCCATAGTT
TCCATGTCTATAGGTTGCTTGATGACGTTGTAATAGTCTTTAACTTGTTTCTTGTTGACG
GGCTTCAAGAAGGGCCACGATTCGGGCATTATCTTCAGTTTAGTTGTCAGAAGATTCTCG
AATATAAACGACAAGGCCACCTGATCGTTATCATCAAGTAATGGATTAATTTGTTTCTCG
AGTTTCATTAGCTGTTCCTCTTTTTCTGCTAATTTCTCAACGCAGCGCTGTAACATTCTC
TGGGCGGCCACAGTGAGACTGCTTGTTGGACCATTATAAAGCGTGCTGTTCTCGACGATC
TGATTGACATCGGCCAAGAATTCTTCGCGGCTTTGATAATGTTTCTGTCGGAGATTATCT
CGTATAGTTTGCAGATCCATCGGTCGGGAAACTATGCGATAGTAATCTGCAACAAGCTTA
TGATTGACAGGAAACAGGAAGGGCTGTACATCGGGCAAATGCCGCATGTGATTTAGGACG
TCTTCCAGCAACGACGACAGGGTGACCAGCGGATCGGTGCGGCGCCTCTCGGCCGGCCGC
CGGACCAAGTACTCGCACGAGTCCGCGGTGGCGCCGCGGCGTTTGCTGCGTCCGAACTCG
CTGCCGCGCCTGCCGCCGCCGCGACGCTTCAGCTCCTCGGCGGTTTGCTTAATAATCTTG
GTTGGTAGCGTTAGCTTTGTTCCATCCACATATCCAAGATCATCATCTTCTGGTTCAACG
GGAGGAGGCTCCACGTCTATGTCCGGAGGAGAGGCCGGTCCACCCGTAACCGAGCCGGTG
TATAGCGGACACGCTTTGTTCGTCCTCATGTGACCAACCTGGCCGCAGGCGCCACACTTT
AGTTTCAAGTCAGGCTTTAGTTTGGCACGTCTTCGGGATGGCGTGTGGAGATCCGGCTCT
TGTTTGATTTGGCCCAGAGGTATGAGGTTGCTGGAGGAGGGCCCGAGGTCACTGTCGTTC
CCAAGGCCAGGTACGGTGACATTGCCGGCCAGTCTTTCTCTCTCCTGATTTCGCTTGATA
CGTCTCAATTGTTCCTGTATTCTTCTCTTCTCCCTCTTCATTTCTTCTTTCTGCGTTTCA
TCCATAGAGGCGAACTGCCGTATGAACATGTCGTCCTTGGTGGACCGTATCTTGGTGTAG
GCCTCTATGACGGCCGCCTTCCGCACGAGCTCGACGCGCGTGTACCGCTGGCCGGAAGCG
TCGCGGAACGTGCGCACTATGCGGAGCACTCGACCTGCTTGACTCGATGTTTGTTGTTGA
TCGCTTGGATTAATTTGCGGTTTCTTCTCGGACTGTCCCATTATCATCTTCCGAAGTTCC
GCTCTCTCTGCCTCCTCTCTTTCCATTGACAGCTGTTCTGTGGTCTTTTTATTTGCTAGC
ATATTTTCGAGATTCTTGCCCATTTCTTCCAAGTCGGATTCCTCGCTGACCGAACTCTCG
GCCTCGTCGGTACTTAGCACCTCTGTACTCTGCAGGACGCGGTTCTGGAGCTCGAATATA
CGCTGACATTCTTCTTTGTACCTTTCTTGATGCTCTGCAATAGAGAATCTATTTCCTCTG
GAGAACTTCGTCATGCCTTCCTCGCCAGCTTTTGCTTTCTCGGTCGATAATGTTCGTACA
ACATCGATTACTTCCCAGCGCGACAGCTTTTTGATCTCCTCTTCGGGAACACCGAACTTC
CTCAACAGTGCCTTAGCGTTGTTCAAACTCAGCCTCCTCAGGTCAGCGTCGGTCCCGGTG
ACGGTTCGTTTGGGTTGTTGCTCCTCGTTCGGTTGCTGCGTGGGCTTGTTCGGCACCCGC
ACGTACGAGAACCCCTCGCCGCAGCCGGTGGGGTCCGCCGGGCCGGTCAGCTGGAGCAGA
CACTTGCCGCGCATGGCCTGGATGTAGGCGCGGGTCGTGTTCCACGGAGCCACTTTTACT
TCATCATCTATCTTCAGCTGCATTTCCTCGTCATCGTCCTCTTGCGGGGTAAACAGGAAC
TTTTCTCCGTAGCCAGCGTCTTTCAGTCTTTGTTCTGCGGCCGCCATACTGAAGTAGGCG
CAGCACTGTTCGGGCGACACCATGGCTCGGATTTCTTCTTCGGAGGGTAGACGGAAATCC
GGCTTTATCACCCACCAATTCGAATCCAATCCGGTACGCTTAAAATCAGCGCATAGCTTC
AATCTCTTTCTAATCGAACTTTCAGAATGCGACGGGAACGCCCTCTTTATATCATCCATT
TTTATACGACGTGGCTTGTCACGAGATTTCCAAAATAGCCTGTATATGAACACCTGCAAG
AAATCTCTAACGAAATTGTTAGCTCTCTTTGAATTTGGTCCGGGGACTTCATACAGCGGA
CACTCTTGTCCGGCAACGTACACAGCGTCGATCTCACGTATATAATATGCTTGTCTGGTA
CGTATAATGATGAAGTCAGTCTGCGGCAACGTGTGTTCGTATATAGGAGCTCTGTACATG
TTGTTCTCGACGACCGGCTGCGTGGCTCCCGGCGCCAGGATCCCGAGGAACGGCGACGTG
TGAGCGTACGCTACTTCACCGTACTTCAGTGGCTTGGGACCGTTGTCCTTGGTAGCTGTC
CGCTTGTAGTAATTTTTGATCTTAGTGCACATGCCAACTTGACTCAACAGTGGCGGATGC
TCTTCGCAGAACTCGACCAGTATTATTTCACCGTCTCTACCGCTCAGATCTTCCGGCGTC
CGCATGAAGAACACGTCACCGCCACCAGACGCTAGTCTTTCTGCTTCACGTTGCTTAGCT
TTCTTTCGAATATGCTTCAGCAAGGGTTGGACGGGGTGCGGTCCGGGGGCAGAGAGCGGC
CCGTACGTCAGCTTCCTGAGCGCGGGCCGGTGGAACGCGCGCAGTCGGGCCGGCCCCATG
TGCGTCTGGATGAAGGGCGCGCGCAGCTCCACCACCGGCGTGCTGTGCTGTATCAGCTGA
CCGCCGCCCACTTTCAAACGTGGGTTCTGCGATTTTGGCTGGTAATATACATCATTCGAT
ATATTGAAAGGATCTCTGTCAGGCGACTTAGGGGGAGGCGGTGGAGCGTCTTCTTGAAGT
ACATTAATTACACCAGCTTTTCCAAGCAGGATCTTGGATTTCTTAACGTGAGGATGAGGT
ATCTTTACTTTAGGAGCTGGACCTCGCTCTCTAGTAATCTTCGAAGGATCGACATCATCT
GGAATACCCAATATAATGTTCTCATCGTTAGGATCCAATGTAAGTATCTTAGGTTTCGGT
ATTTTGGACATGTTCTCTGCATCCCATATAACTTCATCCTCCCAAGTACCGTATACCAAC
TCTTCGTTTTCAACTGGGAATATACTGTACCAAGTGTTATCTTCACCATCAGCTGAATTC
CCTCCAGGTTGGTTATTAGCAGAAGTGGCTGTAGCAGCGGGTGTTTTAGTCTGTAATGTG
GTTGGTGGCTGTGGTCTAGGATGTGAGAATTGCTGTGCAGTGCGGCTTACTGATGTAGGA
ACCCATCCGGCTGCATTACTTTTGCTGTTCAAACGGGCAAGCACCTTATGTTTCATTTCA
CTTCCATCCCATATAACATCATCTTCCCACTGCAACTGTGACAGCATAAGGAAAGAATCA
TCGGGAAAGCCACTATCAGGGCTATCTGCACTCTCCACAGTGTCTCTAATTTCTTCTTCA
ACTTCCTTTGATTTTTCTTCACGATCTGTTCCTTGAGTCTTTAATTTGAATCCGTAGTCA
AACCCATCACCTGTCTCTGGTACATTCAACATATCATACCAAACTTGAGCAGGACCAAAA
CGCCAGTGGGCCGGTGTTGGCCTTTGTGCTTTGTCTCCTGAGCCTAATCCCTTATCGTCA
TTAGACATCTGTTGATTTTCTTCCATAGGCTTGAGAAGTTTCTCTTCATCGTCACTTGCA
TATTGAGGTTCCTGACTGTCTGGAACCATCGGTGGTGTGTCACTGCCTGTACTTCCACTG
CGCTTTCGACGTCTACGTTTTTTAACACCGCGCCATATTTGCGGTAAGCTGGACAGTTTT
CCAGGTCCAAAAAGTCGAGAGAAAAGAAGTACTCTATCTGGTCTGAAATCCGGAAACAGT
TCTGTGACATCAACATTGGCATATTTAGATGGAAGCATTGCAGCCAATGGAGTATCTAGT
TTTTTGGGTTTTTCTTGTTTGGGGGGTGGAACTGTCGAAGGAGGGGGCATAAGTCCACCA
TCACCTTCCATATCACCTTCATAGCCATCATCATTGGTACTCTGTACCTCTTGTTCTCCT
GCAATATCAGTGTCCCTCCAAGTATCTTCTTTTAATTCCTCTTTAATACTCTGTGAATCA
ATAATCACAGGAACATTGCTGCTATGCACAGTTTGTACATCTGAAGTATTTTCAAATTTT
ATCACATTATTTTCTACTTTTATATCCTCTGCTGCATCTTCAATGTCAAAAAAGTCCACA
GCCGATGGACTTTTCTCATTATAGTCTTTTTCTTCCTCTTCTTTAACTGGTTCCTCAACC
TCCAGGACTTCAGAGAGCATAGACCCTAAACCTAAGCGGCTAAGCGATGATAACATTCGC
TTCGATTCACCATCTAGCAATCCATCATCTTCTAACTGACCCCTTTCGTCAATATTACCA
AACAAGAACCCGGTCAGATCCAAGCCTGAACGGCTGTGGTCACCTTGTTCGTCACTATCA
CACATGGTTCGAAGAAGTACAATACAATTACATTTCCAAGTTCATAATATTAGTTTAATT
AAGATATGTATAATGTTTAATAAGGCTACTCAAGTTGCATTGCAATTTTTTTGTTTCAAA
TGGTATTATTCTTTATTTATGAGTGTTT
(5788 bp)

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