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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoFB_comp10557_c0_seq44
Scaffold_idBomo_Chr4
NCBI non-redundant
(nr)		PREDICTED:_zinc_finger_protein_on_ecdysone_puffs_isoform_X2_[Bombyx_mori]
Ontology
GO:0000398 P mRNA splicing, via spliceosome
GO:0003677 F DNA binding
GO:0003697 F single-stranded DNA binding
GO:0003727 F single-stranded RNA binding
GO:0005634 C nucleus
GO:0005694 C chromosome
GO:0005703 C polytene chromosome puff
GO:0005875 C microtubule associated complex
GO:0019233 P sensory perception of pain
GO:0046872 F metal ion binding
GO:0048024 P regulation of mRNA splicing, via spliceosome
GO:0071011 C precatalytic spliceosome
GO:0071013 C catalytic step 2 spliceosome
Transcript
Level		FPKM:3.39 TPM:3.71
ORF EntryO_BomoFB15941_complete:A_BomoFB_comp10557_c0_seq44
Sequence
(Nucleotide)
GACCGGCAGCCATTCGCCATATTGCGTAGAGATTTGTACCAACATTCATTAGCTGACTTT
GCTTTTGTAATTCCTACTTTCGTCGTGGTACTGTTCGAAATATTTCGTGTTTAATTGCTA
TTTAATCTAGTCAATAACTCTGATCAGTGATTTCATTTCATATAAATTCTTGTTTGCGTC
ATTTTCAATCAAAACCCGAACGGATTCCAGTAAAATTACAAAGATGGCGAACCGCAGACC
ACAACCGGGACGCCGTACGGACTTCGGTAGAAACGACCGTGGGAAAAACTTTCCACGTAA
CAATGTGTCCCCGTGGCAGTCCGGAGGCCCGGGGGAGCGGTTACCCAACCTTTTCCCTCT
GGCTGGAGGCTCCGCCGAGGCCACGCTGGCTCTTGCCAGTAACCTCCTTAATTTGTTCCA
ACCGAAGCAGAACCCGGTCCCATCGCTCCTAGACATGCCCATTAGAAGGGACTTTGGGCC
TAATATGGGTCGGTTTGACCGTGGGTATGAGCCTAATAGGATGGGCAATCATGGTAATTT
CCGGCGTACGGGAAATTACAATCGCGCTGGTGAGCGTATCAACATGAATCGTAAACCGTT
CAGGCCCAATGAAGGGCAACGGCAGCATAACAAGAACTCCCCGAAAAAGGAAACCGATTC
TAAAGCTAAGCCTGTTAAGGAGAGTGAACAAGAAGAGAAGACTACTGAGACTGACAAACC
TGAAAATGAGAGAAAAGCGCCGGAAGAGGATGAAAAGCAAGATGTTCCTAAAACGCGCTA
TGATGACATCAACTCAAAGCTGCTGAAATGTCACATCTGCCACAAGAGCATGTGGGATGG
ACGTTCATTTGAGAATCATCTCAGTGGAAGAGCTCATGCCATTATGATGCAGAAGACTGT
TGAGAGCTATGCTCTTACTGCTGATACAATGAGACAAGAATATAAGATTCGTGAGATGAA
ACGCACCCGCAAATCTGGTCAGCAACCAGCTAGAGACTTCTACTGTGCTATGTGTGATAT
GTATGCAGCCAATGGAGCAGCTCACCGGACTACCGTTGGACACCGGAAGCTTAAGAAATA
CCTACATCCCTTCTGTAATACTTGTCACAAGGAGTTGCCAACTAGAATTGAGTTAGATGA
ACACCGTCTCACTGCTGAACATTTGCGTGCAATTCAAGATAAACAAGATGTACTTTCAAA
GCCCAAGCCTGAAATGTTGATGATTTCAACTTTGGGCATGGAGCAGTCATACCTGTGTGA
GCGTCGTCAGCGTAGACCACGCAGGGATGATGTTCAAGAAGAGAAGCATGATGATAATGA
TAAAACTGATGAACAGCAAACTGACACTGAAAACAAAGAAAAGATTGAAAATGAAGATCA
AGAGATGAAAGATGTGAGTGAGAAGGCTGACAGTAAACCTGTTGATGATGAAAAGGTCAT
CCTGGACTTCAAAGAAGATGATGATCTCAGCTATGTTACTCAGGATATGTTCCCAAGTTA
CAGTACGGAACGTGGTGTTGGTCAATCGTTCCTGACTGAGTTCCGCTGCATACAATGCAA
GCTGTGCAAGAAGCTCCTTGACTCGCAGGAAACTGCTGATGTGCACTTGAGAACCTGGAG
ACATCACGTTTTCTTCTTGAAGATGCTTTCTGAGAAGACTGGACACAAACCAGCGGGAAC
TCAATCCACTGAGAATTCAAATGGGAAACGTCCTTCTGAACGCAACGATCAATCTGGTAA
CTGGAAGAGACGCAAGACATCTTCCGATCATGAAGGACAAGATTATGAAAATGATAATGA
CAACGACAATGACAATGACAATGAACATGCTAATGAATATACAGACACAAACCGTGATGA
ACAATTTGATGACGGTATTCCAAATAACGATGATCTTGAAGATTGGGAGCAGTCGGTTGA
TGAAATACTGGAAGATGAGAAGAAAGCCCAAGAAGAACTTGGTGAACCAGATATAAAACC
TAAAATAGAACCTGAAGCGACAGCCGAAATCGAGGATCCAGTAGAAGAGAAGCCTGAAGT
AGCGGAAGTAATTGAACAGCCCCCAGAAAAAGAAAAAAGTCCTCAATTAGCTCTACCCGT
GCCAGATGTGAAACCGAAACCCTCACCGAGAGCTAGAGCACGCGGTAGAGGCAGGGGCCG
TGGCAGATATTAGAACAAGTGTATGTTGTCCCAAAACTTGCTAGTTACAGGCAACTAAAA
TTACTGCTTTGGATAAAAATATTTACTATGCAAGCGAAATAAGGACAGGATTGACTTTCT
ACCAAATTAATTATCTAAAATAATATCTGTAAATAATCTATAAATGAAATCCTATGTTGA
TGAATTATGGAAATCCACAAAAAATCTCTTTGAAGTTGTGTTCCAACGGCAAATCCTATT
CTTATTTTGATTACATTTTATTTACATTACTGTATTGTGGTAAAATTTTCGCTCATGCAA
GTTCACCGACTACCTAATCTAATGTCTAATAACATACACAAAATATTTATATTGTGATGT
GAAGGTTTCTGTTTGTCTCCTAAAAGATTTAAGAGTACTAAACTAAATGGAATGAGAGTT
TCAAAAGATTTAACTTAAAAAGACAGCTGTAAGTTACAGGACATAATGTATTCCTTGCAT
GTGTTATTTAAGTATGAAAATTCTCAATATTTAAATAATTATAATTTCAGTATCTTTGCA
TGTAATAATGGAAATCAAATTGATTTTTACTTTTACTCTGTTTTAAGTTACTTACTTTAA
AATTCGACCAACAAAGAAACAGCCACTGTCAAGTAAAATTAAATCAATTTTATCGCCTTT
ATTATGTTACATAATATTAATCCAAGTTACTCCATTAGTAATTAGATAAAATCATTTTTT
TACTTACTTATTTTTAGCGTTTTATTACTTGATTGAATTGAGAATGTTAGATCTCAGTCA
ATTGATATTTATAACATAAAATTATATTAGAAGTTGTTTAAGCATATTACACCAACTAAA
ATGATAGTGAACCATCTAAAACAGCTTTGAAAACATTAATTTAATTGCAAGTAAGAGTAC
CATAGATTGGAGGGAATAAGGACAAATCTGAGATTTTCTTTACAGGCATAGTGGGCATTA
ATTTTGTGTTGAACTGAATGGTCCAATTTTAAATTGAAGTTTGCAATATTTTTTCTATAA
TCTAGCAAAACTCAGACGTCTTGTCACTGTCAATTTAAGAAGAAACGATAATTTGTCAAT
AGGATCGGAAAGCTCTATAATATCGTCTTCAAAACGATTTAATTATCTTGACTATTTGAA
ATTTGTGTCAAGCAAAGTTTGGATCTATTCAGATAAATAGGTACGTAGGTACCTACCTAA
ACAACTAAATAGTGCCAATACTCACCAGCCCTATCGAAAAACTATTGTCTCCATATCTGG
CCCAATAGTTTTATTTTATTTTTGTGTATATTTTGCAATGAACTATATATAATAATGCAT
TGTATATGAAAATTTAAACTTCCGGAACCATTTTAATCTCAATTTTATTGGTATTACCCT
AAGAAAAACCTCTGAAAATTTATCTTGGAATTGGAAAGCGTTCCGATTCCCCCCAATCTA
CTGTATCGTTTGGATACGTCTCTCCCAGAGTCTACTAGATATTCCAGCGCCTAGTAAGAA
GATCGAAAGAAGAAATCTAAATAATTACTTACGCCGCGTAGGGCACCGGTGACTTACACG
GCAGTCAAAGGGTTAATCGATTATTTATTTGTAAAATATTTTTTTACTCATAATTGAACG
TTTCATATTCTCAGATCGGTTAATTATAATATTAATTCCTGTAACAATCACCCATCTCTA
ATACAAAGATAGACACAGAGCTCAGAGGTACGTTCGTATATTTCGTGGTACGACTGATAA
AGTACGTAATTCTAACGTCCTACATAAAATACGATAATGAATTATTAAAATGCCTTCCCG
TAATTTTCATTCAAAAACAATTTCCCTTATACAAATACCGTTCCGATGTTTACCATTCCT
CGAAAATTTTGAATTAGCCACATTACCCTATACCGGACCCTCACTCTGAACACAAACCGT
TAACACACAAAATATCGTATCGACGTGAAACATTCTACATGCCGTTAGACGCGTTAGACG
TCAGGAGAGCGCCTGGAGGCGGCTGGGCCAGGCGCGGACAGCCGACGCGGTGGCCGCGAC
GCTGGCGCTAGTACGTGAAGATGATGGAGCGGATGAGACCGTCGCGGACCGAATCATTGA
TCTGCCCAATTCCGAAGTTGAAGAAGACCGTCTCGACGGCCACCTGCTGCGCGCACGTGC
CCATCGGGTACCAGCCCACTTTGTTGAACACTATCCCCACCTTGTACACCTTGTTCCTCT
GGATGTACACGGGTCGGTTGAACATGATGTCGAGCAGGTGTCGGTAGGGTACGCGGCTGG
TGTAGTGCGTGTAGGTGAGGCGCGCTCCGTCCGCGTCCAGCAGGTGCGCGTACAGCAGCT
CCGAGTAGCCCGCCACGCCCGGCACAGCGCTCGCAGCGCCTTCCTCGCTCGGAGCTTGCG
TCGGCACCTGGACACCGAGGAGGCAGATATTCTTGTCGACCATGAAGGTGACGGAGCAGT
CGAGGACGCTGGTGTTGAGGCAGTCGGTGTGCTGGATGATGGGGCGCTGGCAGTAGATCT
TGCTGATCTCAGCCCCGCGCTCCATGTGCTCCACGCCGATACCGTTCAACACCGGATTGT
TCATCATTGATGACATACGTACACCTTCGAGCCTGGGGTGCCTGGGGAACTGCATGACGC
AGTGGTGGTGGTGCGGGTGCGACACGTTGAGCGAGTGGCCGCGCGAGGACTCGTTGCCGA
ACACCTGCTCCAGCATCACGGGGCTCGGGGTGTCCACGGTCAGCGTCGGGATATTGGAGG
ACTGGGGACCACCGATGAGTTGCTTCCTGGGAACTCTGCAAGTAGAAAAGCCTCTGGGCA
TGGGCACATCAGCATTGCTGGACAAGATGTTCATGAGGACTGCAAATGCTTCAGACTCGG
TGAGCAGGGAGGACTTGGCCGGACCCTTGGCGAACTGCTGAGGAGTCAGCGTCAGGAAGC
GAATTTTCTCGATCGCCTTGCGGATGGTGGGCTTGTTGTCCTTAGGCTCAACTCTCTTTT
CCTTCTTGGTCTCCTCAGGAACTGGAGTTGTTTCCGGTTCTTCATCTGGCTTCGTAGCAT
CGGTTGTAGCGGCAGGACTGTTCTCAGCGCTGCTCTCTACGTTTACCACCTTCTCCTGTG
AAGTACACGGCTGAGGACTCTTGGACCTTTTCTCGGCTGGCGGTCCATCAGCAGGCGGGC
TAGCGCTCCGGTCGTCCTTCCTCCTCTCCTGTCCCTTGGCATATCTAACAGCAGCTTCGA
ACAGATCCAGCTCACTGTCGATGTTCAAGTGTTCCAAGGAGAACACAGTGATCAGCGTGT
TGAGCTCCACTTCCTCAAAGCTACAGTCGTGGAGCACCTCTTTGGTGTTAGTGCTGATAA
TCTGGAGACATTTGTCCATCAGCACGCTCTCTTCGAAGAGACGGGCGAATTCATAGGCTC
GGCACGCATTGCGAGGGTACAGATCGGACCACAGATACTTAGTGCACTCCTTGACTAGAT
GCGGAAGCATGTACTTTTTGGCGCCATAGCACAATTCACATGCTTTATCGAATGAACTGA
TGTTGATGTTATCCGTGTAAATGTATTCTAAAAGCGCTTTGAATGCTTCAGGCTGGACAT
CTAGAATAGGGATCGGATCATTTCTCTCAGCCATTCCACCGTAGAACATAGCTTCGAAAA
CAGGAGAAGCCATTGCCAGGATGAGCCTGTGGCCACGCACCTCAACTTGGTTCGGCTCAG
ATCCCACCAGGAAGGTACAATCTGACCATTGTTCAGATTGAAGCAAATACTCTCCTCGTT
GTTTAATTTCGGTGCAGGCCAACTGCCAGTCGCACGGTACCTCGCCCATGGTGTACAATT
ATATTTTCTGTTTTTTTTGGTACATTCAAGGCTCAGTATGTATCTTTATGGAAACAATTT
TTTTTAAATCACCTGAAATAGTGGCTAGGTATTGATTGATGCAACTGTTTACAGAGGTGC
TTTTGAGATAATCTGTTTTGTCAAGTTTT
(6149 bp)

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