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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoFB_comp10557_c0_seq37
Scaffold_idBomo_Chr16
NCBI non-redundant
(nr)		PREDICTED:_zinc_finger_protein_on_ecdysone_puffs_isoform_X2_[Bombyx_mori]
Ontology
GO:0000398 P mRNA splicing, via spliceosome
GO:0003677 F DNA binding
GO:0003697 F single-stranded DNA binding
GO:0003727 F single-stranded RNA binding
GO:0005634 C nucleus
GO:0005694 C chromosome
GO:0005703 C polytene chromosome puff
GO:0005875 C microtubule associated complex
GO:0019233 P sensory perception of pain
GO:0046872 F metal ion binding
GO:0048024 P regulation of mRNA splicing, via spliceosome
GO:0071011 C precatalytic spliceosome
GO:0071013 C catalytic step 2 spliceosome
Transcript
Level		FPKM:0.66 TPM:0.72
ORF EntryO_BomoFB15932_complete:A_BomoFB_comp10557_c0_seq37
Sequence
(Nucleotide)
TTTCTGCATTATATTTGAGTCATAAATCTTCCCATTAAAAATGTATTAAAAGCTTAACTC
CTAATCATACTCACTGAATCAAATTGTGGTGTGATAAGTGCAGAAGTGACAACATAAAAT
TATATAGTGAATGTTTTCATGCATTCACAAACTTAGTTATTCACAGTGAACAAGAAGAGA
AGACTACTGAGACTGACAAACCTGAAAATGAGAGAAAAGCGCCGGAAGAGGATGAAAAGC
AAGATGTTCCTAAAACGCGCTATGATGACATCAACTCAAAGCTGCTGAAATGTCACATCT
GCCACAAGAGCATGTGGGATGGACGTTCATTTGAGAATCATCTCAGTGGAAGAGCTCATG
CCATTATGATGCAGAAGACTGTTGAGAGCTATGCTCTTACTGCTGATACAATGAGACAAG
AATATAAGATTCGTGAGATGAAACGCACCCGCAAATCTGGTCAGCAACCAGCTAGAGACT
TCTACTGTGCTATGTGTGATATGTATGCAGCCAATGGAGCAGCTCACCGGACTACCGTTG
GACACCGGAAGCTTAAGAAATACCTACATCCCTTCTGTAATACTTGTCACAAGGAGTTGC
CAACTAGAATTGAGTTAGATGAACACCGTCTCACTGCTGAACATTTGCGTGCAATTCAAG
ATAAACAAGATGTACTTTCAAAGCCCAAGCCTGAAATGTTGATGATTTCAACTTTGGGCA
TGGAGCAGTCATACCTGTGTGAGCGTCGTCAGCGTAGACCACGCAGGGATGATGTTCAAG
AAGAGAAGCATGATGATAATGATAAAACTGATGAACAGCAAACTGACACTGAAAACAAAG
AAAAGATTGAAAATGAAGATCAAGAGATGAAAGATGTGAGTGAGAAGGCTGACAGTAAAC
CTGTTGATGATGAAAAGGTCATCCTGGACTTCAAAGAAGATGATGATCTCAGCTATGTTA
CTCAGGATATGTTCCCAAGTTACAGTACGGAACGTGGTGTTGGTCAATCGTTCCTGACTG
AGTTCCGCTGCATACAATGCAAGCTGTGCAAGAAGCTCCTTGACTCGCAGGAAACTGCTG
ATGTGCACTTGAGAACCTGGAGACATCACGTTTTCTTCTTGAAGATGCTTTCTGAGAAGA
CTGGACACAAACCAGCGGGAACTCAATCCACTGAGAATTCAAATGGGAAACGTCCTTCTG
AACGCAACGATCAATCTGGTAACTGGAAGAGACGCAAGACATCTTCCGATCATGAAGGAC
AAGATTATGAAAATGATAATGACAACGACAATGACAATGACAATGAACATGCTAATGAAT
ATACAGACACAAACCGTGATGAACAATTTGATGACGGTATTCCAAATAACGATGATCTTG
AAGATTGGGAGCAGTCGGTTGATGAAATACTGGAAGATGAGAAGAAAGCCCAAGAAGAAC
TTGGTGAACCAGATATAAAACCTAAAATAGAACCTGAAGCGACAGCCGAAATCGAGGATC
CAGTAGAAGAGAAGCCTGAAGTAGCGGAAGTAATTGAACAGCCCCCAGAAAAAGAAAAAA
GTCCTCAATTAGCTCTACCCGTGCCAGATGTGAAACCGAAACCCTCACCGAGAGCTAGAG
CACGCGGTAGAGGCAGGGGCCGTGGCAGATATTAGAACAAGTGTATGTTGTCCCAAAACT
TGCTAGTTACAGGCAACTAAAATTACTGCTTTGGATAAAAATATTTACTATGCAAGCGAA
ATAAGGACAGGATTGACTTTCTACCAAATTAATTATCTAAAATAATATCTGTAAATAATC
TATAAATGAAATCCTATGTTGATGAATTATGGAAATCCACAAAAAATCTCTTTGAAGTTG
TGTTCCAACGGCAAATCCTATTCTTATTTTGATTACATTTTATTTACATTACTGTATTGT
GGTAAAATTTTCGCTCATGCAAGTTCACCGACTACCTAATCTAATGTCTAATAACATACA
CAAAATATTTATATTGTGATGTGAAGGTTTCTGTTTGTCTCCTAAAAGATTTAAGAGTAC
TAAACTAAATGGAATGAGAGTTTCAAAAGATTTAACTTAAAAAGACAGCTGTAAGTTACA
GGACATAATGTATTCCTTGCATGTGTTATTTAAGTATGAAAATTCTCAATATTTAAATAA
TTATAATTTCAGTATCTTTGCATGTAATAATGGAAATCAAATTGATTTTTACTTTTACTC
TGTTTTAAGTTACTTACTTTAAAATTCGACCAACAAAGAAACAGCCACTGTCAAGTAAAA
TTAAATCAATTTTATCGCCTTTATTATGTTACATAATATTAATCCAAGTTACTCCATTAG
TAATTAGATAAAATCATTTTTTTACTTACTTATTTTTAGCGTTTTATTACTTGATTGAAT
TGAGAATGTTAGATCTCAGTCAATTGATATTTATAACATAAAATTATATTAGAAGTTGTT
TAAGCATATTACACCAACTAAAATGATAGTGAACCATCTAAAACAGCTTTGAAAACATTA
ATTTAATTGCAAGTAAGAGTACCATAGATTGGAGGGAATAAGGACAAATCTGAGATTTTC
TTTACAGGCATAGTGGGCATTAATTTTGTGTTGAACTGAATGGTCCAATTTTAAATTGAA
GTTTGCAATATTTTTTCTATAATCTAGCAAAACTCAGACGTCTTGTCACTGTCAATTTAA
GAAGAAACGATAATTTGTCAATAGGATCGGAAAGCTCTATAATATCGTCTTCAAAACGAT
TTAATTATCTTGACTATTTGAAATTTGTGTCAAGCAAAGTTTGGATCTATTCAGATAAAT
AGGTACGTAGGTACCTACCTAAACAACTAAATAGTGCCAATACTCACCAGCCCTATCGAA
AAACTATTGTCTCCATATCTGGCCCAATAGTTTTATTTTATTTTTGTGTATATTTTGCAA
TGAACTATATATAATAATGCATTGTATATGAAAATTTAAACTTCCGGAACCATTTTAATC
TCAATTTTATTGGTATTACCCTAAGAAAAACCATTGAAAATTTGTGTTATATTTAGAAAA
GGTCCCGATTCCCCCCAATCTACGGTAACTATAGCTTCACAAATCGTTTCAATGAATTAT
ATGGTAAGGTATATTTAAAGCGTATCATTGTACTGGTGCAATAATTATTATTGACAGAGA
AATTAAAAAGAAAATTATACATAATTATTATTATGAGAATATATTATTTTTTTCATAACT
GTAACTCAAACAAAGTGTCTGTACAAAATCCGACTTATTATGTAATAGTTAAGTGTATAT
ATTGTTCTATAAACATGATAAAGTAATATTTTTTCTATCTGTGATCGTGGTTAGGGACTG
GTGGACATTTTGTATATAACCGTTGGGTGTTGTCAATTTGTTGTGACGGAGCGTGGTTCG
TGTTGTTGAACCAATTTTGGGCGGGAATCGCTCAAAATTGGTTCTATAAAATGAAATCAG
CCGGTCATGCTTAGACTTAGTTCAAATGTGGCTTATTACGGTGGTAATGCGACAGAGAAA
TGTGATAGTAACGGCATCAAGGCACCAGGAGACCATACATCAAAAGAGCTGTCTTTTTTT
TAAAGGGATTTTGTGACCTGGCAACCTTTAAAAAGAGCTGTCAATTATATCGTTATACAG
ACTATAGAACAGATGTTTAAAAAGAGACTATAATATAGATAATACAATTTTTTTTTTATA
AAAAAGAGTTAGGTTTTTATTGTAGTAAGATTGATTAATACACGTCGGTCTCTGGGTGCC
GGCACAGGCCACAGGGCCGTCCACACATAGTGCCTAACCTGTACAAGATTTTATGAATTT
GTTGACAGATGTAGTTCTAATTGAGAAACGAAAAAACAATTTCACAAAGAGAACGAACAA
ATTTTAAGACAATTATATTTTTGTAAGCAAGATTAAGGCTACCCCATAGATATACAGTTC
TGTTCGCTCGTTCAATAGTAATGATGTTGATGTTATATTAGTAGAATTGCGTAGTTGTGT
AATAATGCTGTTATTGACATTGTTTAACTGTTTTTTTTTTTAAATACAAATGACTACAGG
TATGGTTTCGTGTAAAATATAGATAAATGAAAGTGCCAACAGTTAAGTGTGGAGGAAAAT
GGTGGTTTGTCGTTAGAATATACGTTAAAAAATATCTGAGGTTGTATGTAAATATAAGTA
TAAAATGGCGACAAAATATCATTGATTTCCGTGGAGATCGTTACATAGACAATTTCTTTA
CGAAAGCGCTCGAAAGTAGTACTGAGCGCGCCGTCCATTATGCTCGGCGGTGAATGCCGG
GCTTTATTTTTATACAACATGACATTTTGATTACAAATGCAGTTTACTCCCATGTTAAAA
AATTGTATACCATATTATGTATGTAATTAATTGAATTATTATTGGTAGCCAAATTAATTA
TTCTAATTTATTATTATCAAGATTATTATACTTATAGTTGTGAATCTATTTTTTTTTTAT
TGGCTGTGACTGTGTATCTTTTTGTTTAAATTAATGCATTTTCCCATTTTCATTTCGACC
ATTTTTGTGTAGTTATTATATCCTAAGGCCCGCTCCTAAAATACATAAGAAAATACAGTA
TTTTAATACGATTGTCTGTAAGTCGAGAGTCTGACGTCACTTTGCCTAAAATAGAAGATA
AAAATAATAAAAGAATATATATGTAAAAATAATATAATGATAAAGAGAGAAATTTATTTT
TAATTGTAATAATATTGTGAAGCAAGTGGATGCTCATGTAAA
(4782 bp)

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