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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoFB_comp10557_c0_seq2
Scaffold_idBomo_Chr4
NCBI non-redundant
(nr)		PREDICTED:_zinc_finger_protein_on_ecdysone_puffs_isoform_X2_[Bombyx_mori]
Ontology
GO:0000398 P mRNA splicing, via spliceosome
GO:0003677 F DNA binding
GO:0003697 F single-stranded DNA binding
GO:0003727 F single-stranded RNA binding
GO:0005634 C nucleus
GO:0005694 C chromosome
GO:0005703 C polytene chromosome puff
GO:0005875 C microtubule associated complex
GO:0019233 P sensory perception of pain
GO:0046872 F metal ion binding
GO:0048024 P regulation of mRNA splicing, via spliceosome
GO:0071011 C precatalytic spliceosome
GO:0071013 C catalytic step 2 spliceosome
Transcript
Level		FPKM:3.21 TPM:3.52
ORF EntryO_BomoFB15907_complete:A_BomoFB_comp10557_c0_seq2
Sequence
(Nucleotide)
TTTAAAAAAATTTAAGTATCCTATATACTTTGCCTTCTTACTACATTTGAAAAATATATT
GGAATCGAACCTTTGTTATTTTGTCTCAGAACAATTGCAATTTTTGAGACTTGAAATTAA
GTAGTAACTTAATCCTGTAAAAACTAGAAGTTGTATCTAATTAATTATTATTTTACTGAG
TTAACTGGTTTTCATGGTTACAGCAGAACTGAGTGGAACGGTGGGACCAACAAGTCTTGA
CAAAAAAAGCTGTACTTCTCGAAAGTTGATATCAACATTAATCTTCTTTTAAAATGCTGA
AAATGATTCATTCAATGTTAATCTGTGAATTTTTCTAGTTGTTGTCAAACACCATTTTTA
ATGCAATTAATAAAATTCCCAAAATTCAAATTCAGTTGCCAATATAGACCCTGTGAAATT
TTGTGTCAAGTACCTTTTTGGAAAATTGCAGTTCCTCCTCCGGACATGCTAGTCCAAAAT
TTTTCGAACTAACAATATTCTAATGAATTCCCTTTAGATGGGCAATCATGGTAATTTCCG
GCGTACGGGAAATTACAATCGCGCTGGTGAGCGTATCAACATGAATCGTAAACCGTTCAG
GCCCAATGAAGGGCAACGGCAGCATAACAAGAACTCCCCGAAAAAGGAAACCGATTCTAA
AGCTAAGCCTGTTAAGGAGAGTGAACAAGAAGAGAAGACTACTGAGACTGACAAACCTGA
AAATGAGAGAAAAGCGCCGGAAGAGGATGAAAAGCAAGATGTTCCTAAAACGCGCTATGA
TGACATCAACTCAAAGCTGCTGAAATGTCACATCTGCCACAAGAGCATGTGGGATGGACG
TTCATTTGAGAATCATCTCAGTGGAAGAGCTCATGCCATTATGATGCAGAAGACTGTTGA
GAGCTATGCTCTTACTGCTGATACAATGAGACAAGAATATAAGATTCGTGAGATGAAACG
CACCCGCAAATCTGGTCAGCAACCAGCTAGAGACTTCTACTGTGCTATGTGTGATATGTA
TGCAGCCAATGGAGCAGCTCACCGGACTACCGTTGGACACCGGAAGCTTAAGAAATACCT
ACATCCCTTCTGTAATACTTGTCACAAGGAGTTGCCAACTAGAATTGAGTTAGATGAACA
CCGTCTCACTGCTGAACATTTGCGTGCAATTCAAGATAAACAAGATGTACTTTCAAAGCC
CAAGCCTGAAATGTTGATGATTTCAACTTTGGGCATGGAGCAGTCATACCTGTGTGAGCG
TCGTCAGCGTAGACCACGCAGGGATGATGTTCAAGAAGAGAAGCATGATGATAATGATAA
AACTGATGAACAGCAAACTGACACTGAAAACAAAGAAAAGATTGAAAATGAAGATCAAGA
GATGAAAGATGTGAGTGAGAAGGCTGACAGTAAACCTGTTGATGATGAAAAGGTCATCCT
GGACTTCAAAGAAGATGATGATCTCAGCTATGTTACTCAGGATATGTTCCCAAGTTACAG
TACGGAACGTGGTGTTGGTCAATCGTTCCTGACTGAGTTCCGCTGCATACAATGCAAGCT
GTGCAAGAAGCTCCTTGACTCGCAGGAAACTGCTGATGTGCACTTGAGAACCTGGAGACA
TCACGTTTTCTTCTTGAAGATGCTTTCTGAGAAGACTGGACACAAACCAGCGGGAACTCA
ATCCACTGAGAATTCAAATGGGAAACGTCCTTCTGAACGCAACGATCAATCTGGTAACTG
GAAGAGACGCAAGACATCTTCCGATCATGAAGGACAAGATTATGAAAATGATAATGACAA
CGACAATGACAATGACAATGAACATGCTAATGAATATACAGACACAAACCGTGATGAACA
ATTTGATGACGGTATTCCAAATAACGATGATCTTGAAGATTGGGAGCAGTCGGTTGATGA
AATACTGGAAGATGAGAAGAAAGCCCAAGAAGAACTTGGTGAACCAGATATAAAACCTAA
AATAGAACCTGAAGCGACAGCCGAAATCGAGGATCCAGTAGAAGAGAAGCCTGAAGTAGC
GGAAGTAATTGAACAGCCCCCAGAAAAAGAAAAAAGTCCTCAATTAGCTCTACCCGTGCC
AGATGTGAAACCGAAACCCTCACCGAGAGCTAGAGCACGCGGTAGAGGCAGGGGCCGTGG
CAGATATTAGAACAAGTGTATGTTGTCCCAAAACTTGCTAGTTACAGGCAACTAAAATTA
CTGCTTTGGATAAAAATATTTACTATGCAAGCGAAATAAGGACAGGATTGACTTTCTACC
AAATTAATTATCTAAAATAATATCTGTAAATAATCTATAAATGAAATCCTATGTTGATGA
ATTATGGAAATCCACAAAAAATCTCTTTGAAGTTGTGTTCCAACGGCAAATCCTATTCTT
ATTTTGATTACATTTTATTTACATTACTGTATTGTGGTAAAATTTTCGCTCATGCAAGTT
CACCGACTACCTAATCTAATGTCTAATAACATACACAAAATATTTATATTGTGATGTGAA
GGTTTCTGTTTGTCTCCTAAAAGATTTAAGAGTACTAAACTAAATGGAATGAGAGTTTCA
AAAGATTTAACTTAAAAAGACAGCTGTAAGTTACAGGACATAATGTATTCCTTGCATGTG
TTATTTAAGTATGAAAATTCTCAATATTTAAATAATTATAATTTCAGTATCTTTGCATGT
AATAATGGAAATCAAATTGATTTTTACTTTTACTCTGTTTTAAGTTACTTACTTTAAAAT
TCGACCAACAAAGAAACAGCCACTGTCAAGTAAAATTAAATCAATTTTATCGCCTTTATT
ATGTTACATAATATTAATCCAAGTTACTCCATTAGTAATTAGATAAAATCATTTTTTTAC
TTACTTATTTTTAGCGTTTTATTACTTGATTGAATTGAGAATGTTAGATCTCAGTCAATT
GATATTTATAACATAAAATTATATTAGAAGTTGTTTAAGCATATTACACCAACTAAAATG
ATAGTGAACCATCTAAAACAGCTTTGAAAACATTAATTTAATTGCAAGTAAGAGTACCAT
AGATTGGAGGGAATAAGGACAAATCTGAGATTTTCTTTACAGGCATAGTGGGCATTAATT
TTGTGTTGAACTGAATGGTCCAATTTTAAATTGAAGTTTGCAATATTTTTTCTATAATCT
AGCAAAACTCAGACGTCTTGTCACTGTCAATTTAAGAAGAAACGATAATTTGTCAATAGG
ATCGGAAAGCTCTATAATATCGTCTTCAAAACGATTTAATTATCTTGACTATTTGAAATT
TGTGTCAAGCAAAGTTTGGATCTATTCAGATAAATAGGTACGTAGGTACCTACCTAAACA
ACTAAATAGTGCCAATACTCACCAGCCCTATCGAAAAACTATTGTCTCCATATCTGGCCC
AATAGTTTTATTTTATTTTTGTGTATATTTTGCAATGAACTATATATAATAATGCATTGT
ATATGAAAATTTAAACTTCCGGAACCATTTTAATCTCAATTTTATTGGTATTACCCTAAG
AAAAACCTCTGAAAATTTATCTTGGAATTGGAAAGCGTTCCGATTCCCCCCAATCTACTG
TATCGTTTGGATACGTCTCTCCCAGAGTCTACTAGATATTCCAGCGCCTAGTAAGAAGAT
CGAAAGAAGAAATCTAAATAATTACTTACGCCGCGTAGGGCACCGGTGACTTACACGGCA
GTCAAAGGGTTAATCGATTATTTATTTGTAAAATATTTTTTTACTCATAATTGAACGTTT
CATATTCTCAGATCGGTTAATTATAATATTAATTCCTGTAACAATCACCCATCTCTAATA
CAAAGATAGACACAGAGCTCAGAGGTACGTTCGTATATTTCGTGGTACGACTGATAAAGT
ACGTAATTCTAACGTCCTACATAAAATACGATAATGAATTATTAAAATGCCTTCCCGTAA
TTTTCATTCAAAAACAATTTCCCTTATACAAATACCGTTCCGATGTTTACCATTCCTCGA
AAATTTTGAATTAGCCACATTACCCTATACCGGACCCTCACTCTGAACACAAACCGTTAA
CACACAAAATATCGTATCGACGTGAAACATTCTACATGCCGTTAGACGCGTTAGACGTCA
GGAGAGCGCCTGGAGGCGGCTGGGCCAGGCGCGGACAGCCGACGCGGTGGCCGCGACGCT
GGCGCTAGTACGTGAAGATGATGGAGCGGATGAGACCGTCGCGGACCGAATCATTGATCT
GCCCAATTCCGAAGTTGAAGAAGACCGTCTCGACGGCCACCTGCTGCGCGCACGTGCCCA
TCGGGTACCAGCCCACTTTGTTGAACACTATCCCCACCTTGTACACCTTGTTCCTCTGGA
TGTACACGGGTCGGTTGAACATGATGTCGAGCAGGTGTCGGTAGGGTACGCGGCTGGTGT
AGTGCGTGTAGGTGAGGCGCGCTCCGTCCGCGTCCAGCAGGTGCGCGTACAGCAGCTCCG
AGTAGCCCGCCACGCCCGGCACAGCGCTCGCAGCGCCTTCCTCGCTCGGAGCTTGCGTCG
GCACCTGGACACCGAGGAGGCAGATATTCTTGTCGACCATGAAGGTGACGGAGCAGTCGA
GGACGCTGGTGTTGAGGCAGTCGGTGTGCTGGATGATGGGGCGCTGGCAGTAGATCTTGC
TGATCTCAGCCCCGCGCTCCATGTGCTCCACGCCGATACCGTTCAACACCGGATTGTTCA
TCATTGATGACATACGTACACCTTCGAGCCTGGGGTGCCTGGGGAACTGCATGACGCAGT
GGTGGTGGTGCGGGTGCGACACGTTGAGCGAGTGGCCGCGCGAGGACTCGTTGCCGAACA
CCTGCTCCAGCATCACGGGGCTCGGGGTGTCCACGGTCAGCGTCGGGATATTGGAGGACT
GGGGACCACCGATGAGTTGCTTCCTGGGAACTCTGCAAGTAGAAAAGCCTCTGGGCATGG
GCACATCAGCATTGCTGGACAAGATGTTCATGAGGACTGCAAATGCTTCAGACTCGGTGA
GCAGGGAGGACTTGGCCGGACCCTTGGCGAACTGCTGAGGAGTCAGCGTCAGGAAGCGAA
TTTTCTCGATCGCCTTGCGGATGGTGGGCTTGTTGTCCTTAGGCTCAACTCTCTTTTCCT
TCTTGGTCTCCTCAGGAACTGGAGTTGTTTCCGGTTCTTCATCTGGCTTCGTAGCATCGG
TTGTAGCGGCAGGACTGTTCTCAGCGCTGCTCTCTACGTTTACCACCTTCTCCTGTGAAG
TACACGGCTGAGGACTCTTGGACCTTTTCTCGGCTGGCGGTCCATCAGCAGGCGGGCTAG
CGCTCCGGTCGTCCTTCCTCCTCTCCTGTCCCTTGGCATATCTAACAGCAGCTTCGAACA
GATCCAGCTCACTGTCGATGTTCAAGTGTTCCAAGGAGAACACAGTGATCAGCGTGTTGA
GCTCCACTTCCTCAAAGCTACAGTCGTGGAGCACCTCTTTGGTGTTAGTGCTGATAATCT
GGAGACATTTGTCCATCAGCACGCTCTCTTCGAAGAGACGGGCGAATTCATAGGCTCGGC
ACGCATTGCGAGGGTACAGATCGGACCACAGATACTTAGTGCACTCCTTGACTAGATGCG
GAAGCATGTACTTTTTGGCGCCATAGCACAATTCACATGCTTTATCGAATGAACTGATGT
TGATGTTATCCGTGTAAATGTATTCTAAAAGCGCTTTGAATGCTTCAGGCTGGACATCTA
GAATAGGGATCGGATCATTTCTCTCAGCCATTCCACCGTAGAACATAGCTTCGAAAACAG
GAGAAGCCATTGCCAGGATGAGCCTGTGGCCACGCACCTCAACTTGGTTCGGCTCAGATC
CCACCAGGAAGGTACAATCTGACCATTGTTCAGATTGAAGCAAATACTCTCCTCGTTGTT
TAATTTCGGTGCAGGCCAACTGCCAGTCGCACGGTACCTCGCCCATGGTGTACAATTATA
TTTTCTGTTTTTTTTGGTACATTCAAGGCTCAGTATGTATCTTTATGGAAACAATTTTTT
TTAAATCACCTGAAATAGTGGCTAGGTATTGATTGATGCAACTGTTTACAGAGGTGCTTT
TGAGATAATCTGTTTTGTCAAGTTTT
(6146 bp)

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