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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoFB_comp10504_c0_seq1
Scaffold_idBomo_Chr24
NCBI non-redundant
(nr)		blastopia_polyprotein_[Lasius_niger]
Ontology
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003824 F catalytic activity
GO:0003887 F DNA-directed DNA polymerase activity
GO:0003964 F RNA-directed DNA polymerase activity
GO:0004190 F aspartic-type endopeptidase activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0004523 F RNA-DNA hybrid ribonuclease activity
GO:0005622 C intracellular anatomical structure
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0006310 P DNA recombination
GO:0006508 P proteolysis
GO:0008152 P metabolic process
GO:0008233 F peptidase activity
GO:0015074 P DNA integration
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0016787 F hydrolase activity
GO:0019012 C virion component
GO:0030430 C host cell cytoplasm
GO:0042025 C host cell nucleus
GO:0046718 P viral entry into host cell
GO:0046872 F metal ion binding
GO:0071897 P DNA biosynthetic process
GO:0075713 P establishment of integrated proviral latency
GO:0075732 P viral penetration into host nucleus
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
GO:0090502 P RNA phosphodiester bond hydrolysis, endonucleolytic
Transcript
Level		FPKM:2.26 TPM:2.47
ORF EntryO_BomoFB14514_5prime_partial:A_BomoFB_comp10504_c0_seq1
Sequence
(Nucleotide)
AAGCCACTTTTAGTTCCTCGTAACTTCTGAAAGTTTTTTCGGTTTTTAACCATAATTCTG
CTGTTCCAGCTAAACATCGTCGCGCTATAATGAGTTTCTGCTGCTGGCTCCACCCAAATA
TATCGGCATTATCGTCGAGATCTTGTGTCCACTTCGCAGAAGAGTACGTGATGTCATCAC
CCGTGAACTTTGGCACAGCGTCCATCGTGTAAAATAAATTCTTGCTATCGTCGTTTTTGC
TCTCCGCCATCGTGCAGAATCGTCGTATATCGTCGTATAAATGCGTCTTTCGTCTTTGAA
AAATGTAACCGGCGGCGTGGCGTCGGCGCAGGTTAAGTATGGCGGCCGCGGCGTTGTTCA
CACCACGCGACAACTTCGTAAAATATGCGTAGATACGTTAAATCATTTAGACCCTGATAT
TCCTGAGTATCCCGGACGAGAAATTGTAGGTGTGGGTCTAAATGAAATCACTCTTTTCTA
GGGTTTCACAATACTTTTTATTTAATTCTTAGAGAGCACTTTGAACACGTCTTACTCCTA
ATGGCGGCGTCGTGCGAGAGCGCGAACTAGAGCTACATCCGTCCCTTTCACACATCATGC
GTTCAGAATCTTTCACTCGTTCAGAAATGTTTTACAATAATTAGAAATGTTAGTAATAAT
TAAATCCTACAACTCGGCCTTCCTGCACATCAGTCTGGCCTCAGACTGAAAGTACTGAGA
TAATAAAATAGTTCTTATGAATTAAAAATAAAAATAACAAAAATAAAATCTCTAACTTTA
CCTTAATTTACCTAATACTACTACTATGCAAATTTTTTTTTTCTAAACATTTTTACACAA
TAATAACGCTACAAAAATATTTTTAGTTAAACCTTATACTACCTATTACAAACAATCATG
CTATAACTCTGCACACAGCTAATAAAAACAAATAGTAATTACTCTTACTTAGTACATAAC
ACAACAAAAACAGTAGGTTTAAACTATCAGTTTAGAGGCAAACAAGTTACAATGACACAG
AGAACAGCAATGCATGATAATTATTCACAGTTACTTATTCAATAACAAAATGAGCAATGT
AAATACTAGATCAACCTAAAATAAACAAACAATGTAGTGTTACAATGCACCTAAACACTC
AGACCAGAGTTAGATTGAGTCAAGGCCACCTCTTCATGAAATCTAATGCTGATGTAGTTC
GTACTGGCCCATCTTTGCTTCTGTCTATTTTTTCGACCTCATATCGACCTTTCCCCATTT
CCCTAGTGATGCGATATGGTCCATAAAATTTAGGTTTCAATTTTAGGGCGTTCCCAAATT
GTGTCCTTTGAATAGCTACAAGATCTCCAACCTTGTACATTTCTCCTACTTTACGTCGTT
TATTATAAGTCTTTCTATTCTCCTCTTGCATTCTTAAAATTTGAGCTTTGGCTTCTCTTC
GTGCTTCTTCTCTCCTATTCATAAATTGCAATCTATTTTCTTCTTCTAAATATTCTAAAA
TTGATAAATCTTCTTTCAGTTTAAGTTTCACTCCTGTTAACAGTTCGAATGGCGTAGTAC
AGATTGCCCGCTGGTATGTGCTGTTTATCACTTGTTGTAGTTTGCTTGTATATTTGTACC
AGTGACCAGGTTCTTCAATACACATCTTTGTCAACGCAGAAATAATAATACTGTTCATGC
GTTCTACTTGGCCATTTCCACGAGGTATTCCAGTAGTGATTGTAACATGTTCGATGTCTT
CTTCTTCACAATATTCTCGGAACTCACTGCCTGTGAATGCTGTACCTCGGTCAGTGATAA
TCCTCCGTGGGTTGCCAAAATCCTTTTGATGTAATCTCAATTTTTCCACAGTTTCTTTTG
CTGTTACAGTCTTGACTGGATAAATCCACACAAACTTTGTAAATCCATCAATTATAGTAA
GTATGTAGTTATACATTTTCTTAGTTGCATCTAAGGGTCCTAGGTGATCACAGTGAAGAG
TATCCAGTGGTAATTCTCCTTTTTCTATGGGATTTAACAAACCTTCCTTCTTTCCAGACT
TCCTGCTTGCTAATAGACATGGTACACATGTAGAAATTACTTTTTCAATTTTGCTATCTA
ATTTAGTAATAAAGTAATCTTTCTCTATAATATCCCTTATCTTCTTTTTACCAAAGTGTC
CTGTACAATGTGCTTTCTTAATAATTTCCATATCCAGTATCTTAGGTAACACCAACTTCT
TTTCTATACCCTTGTAAATAACTCCATTCTCAAGGAAATAATCTTCATACTCATTTTCTT
CTAAGATTTTTCTGATAACCTTCAAACTTTCGTCATCTGCTTGAGCCTTCTTCACTCTTG
CATGTAACTCGACATCAACAAAAAGTATGTTTCTGCTCAATGCATCAACATGCTGCTTAA
CTAACTGTTCTTCAGTGATGGCTAGTCGTCTTGGTCTTTGTGAAACTGGTACATCATCCT
TCAACACAATCTTCAGCCTGATAGGTGCATCTTTAGTCTTCAAAGGTGTGTAACTGTCAA
TAATTTCCCTCACCGCTGTACACTGGTCATTGCTACTAGAAGATAGACAGATAGCATTTT
GATACGATATGTCATAACAAGGAGGCCTGACCTCAACCAAACCCTTGTCAATAACTGTGA
TAGTATTTACTAAAAATTGTTGACCCAGTATTACATCATATGGTATTCCACCTGTAGGTA
CAATATACAAATTAATACTATATCTGTGACTGTCAATAGTTAAATCTGTGTCGAACTTAC
CAATCGAAAATACTTTAGAACTTCCTAACCCAGTAAGCAACATTTTTTCTGGTATGTACT
CGCATTTTAGTTTTGTAAACAAATCAAAAGTTATTAAATTTAAGTCGCTACCTGTGTCAA
TTAAACAATTAGTCACATAGTTACCAACTTTTACTGATTTTACACTCATGTTTATAGAAT
CACGTTTGTTTACATTTAATAAATTTGACGAAACAATATGATTTAGTTGTTGACAACTAA
AATTTGGCATATCACTCACTTGCTCTTTTAAATCGCATTGCTCACGTTCGTATAGTTCGT
TCTCGTTCTTCTCGTCGTCCTCCTGCTGTCGAACAAACATAGATCGCCGATCTTGTTCAT
CACCTCCTCCATAATAATTATTTGATGCTTTTTTAGCTTCCATACCTTGTGATGCGCGGC
ACTCCGTACCCTTGTGCCCGAACCCGTTGCACTTGAAGCATTTGATACCTCTGCGGCAGG
AACTAGATAGGTGCCCTCTTTCACCACAATTGTAACATCGATGAACCTGTCTAGGCATTA
CCGCCGTGTCTCGCTGACCTCGTCTCATGGTATCAACACTTTTTTTGGACTTCTCTTTGA
AACTTTCATATAATACTAATTTCTCCTTGAGCACAGAATACGACGTTACCCCGTAGAATA
ACAACTTGTTAGATTCATAGTCAGATATTCCGTCGATTATATACTGAATCGCGACGTAAT
CCGGAAACTTAGCTCTTTTTCCGAGTTCTTTCATTACGAGCATATATTGATAAAACGACT
CATTGGGTTGTTTTTTCCGTCTGCTCATTGTCTCATGCATTTGTTTACTGTTTATCACCT
CAGGGAATTCCTTCATCAAAGCCACTTTTAGTTCT
(3635 bp)

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