SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoFB_comp10392_c2_seq11
Scaffold_idBomo_Scaf005
NCBI non-redundant
(nr)		PREDICTED:_protein_transport_protein_Sec24A_[Bombyx_mori]
Ontology
GO:0000139 C Golgi membrane
GO:0002474 P antigen processing and presentation of peptide antigen via MHC class I
GO:0003674 F molecular_function
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0005794 C Golgi apparatus
GO:0005829 C cytosol
GO:0006810 P transport
GO:0006886 P intracellular protein transport
GO:0006888 P endoplasmic reticulum to Golgi vesicle-mediated transport
GO:0008270 F zinc ion binding
GO:0012507 C ER to Golgi transport vesicle membrane
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016192 P vesicle-mediated transport
GO:0019886 P antigen processing and presentation of exogenous peptide antigen via MHC class II
GO:0030127 C COPII vesicle coat
GO:0045714 P obsolete regulation of low-density lipoprotein particle receptor biosynthetic process
GO:0048208 P COPII vesicle coating
GO:0048471 C perinuclear region of cytoplasm
GO:0050714 P positive regulation of protein secretion
GO:2000189 P cholesterol homeostasis
Transcript
Level		FPKM:1.07 TPM:1.17
ORF Entry
Sequence
(Nucleotide)
TTAACACCAGGTGGGCTGTGAACTGGTCCATCCATCTAAGCAATGAAAAAAAAAAAAGAA
CTCTAACGTCTGAGTAAGCACCCTACTAAGCCCAATCGGAAACAACAAACTTTCATTGCA
TCATCCATTGCGCGTAATGTATTAAGGTTCAATGGAGAGAGCAACTTTCATACACCCTGT
TTACCCTAACACCTACAAAAGGGCAGGTAAGAGTTTTAAAATAAAAACAAAAAACACAAC
CCGATTTTGGTACAAATTGACAGCTGTCATTAATGGTGCCCCGTGTAGCTTGGTACACGT
GACAGAAGTGAAACTTCTTTCGCGGTGCAGTATTGTAGTTTTCTTCATTTTTCACCCTTA
AACCAAATTTCTCTTGTAACAGGGAATGCTGTGTATAAGAGAAACGACCTAGCTCGCTGT
CTTCCTCTCCGCGGTTCGCGAGACGCTCTGTCTATTCTCTCACTCTCGCTCGTTCTAAAT
TGTATCTTTTCTCTCTAGCCGTAACGAATCTGTCGCGAGTTAAATTTTACTCTCAACGCG
CCTAAAGAAGTTTCACTTCAAAAACTAGGCTACGGCTTGGGACGACCACCAACTCTCCAT
CAGGTCTGTCTACAATGCCAAAAATCAAATAATAACACAAACAACTAATTCAACAACCGA
AATCAACATGGATGATATATTTAATATTAGGACTGTAAAATTGTACTTTTTTATATATAG
TCCATATCATATTATAGCACAGTTATTTGAATGCCCAAACATAAGTAAGAAGCCCTTTAT
TGATATTAAAGGGCCTTATGGACATGTTGCTTATGGACATTGGCAATGTCAGCGACACTC
GATTCGCCACTGTTTTCAAAGCCACTGTTTTCAAATAGCATTCAACAAATTGCCCTTAAT
AAAGCTCTCTATCAGGTTTTCAGATTGAGATCAAGAGTCTTCGAGTGTAAGAAGATGAGG
GCGTTCTTAACGCGTTATTTTCAGCTTGATCTGTGAAACGGAATTTCTTAACGCAATTAT
GACCGACAGAACTTGCATATATGCAAACTTATCTTGGAAATGTCGTCAGCGAGATTCAGA
CATGTGTCAAATATCTTGTGTTCTATGATGAGTACCGCCACAGTTAGAAACGATCAAATT
AGTAACGAATTAGAAAGAAATAGAAAATTGAAATCGCGGCGCTCAAATGCAACCAGTTGG
ATTGTATTACAGCGTAACTGGTGTAGGCCATACATGGATGGATATTTCTGCCTATCTCTA
AAAGTGGCAAAGATAAGAACCTGTTTTTTTTTCAGTGTTTGTCAAACTTTTTTTTGTTTC
GTAATGCGCGACATATATTAGTGTTCTATTTTTTTTATACGTTTTTTTTTGATACTATGT
TTTTTCCCTGTACACCCCATTACCGCAAAGCAAGCTTTGGTATAGAACTTGTTTAGCGGC
TTTAATCAGACATATTTCATGGGCAAGTTTTTGTATGAAGTGACAAAAATGACTGCTTAG
TTCCGTGAGTTGTTTTGTAATTAGTTACGACAAAAAAAAACTAATCCAAAAGTTCCATGT
ATCGAGCATAAAATCTATTTCCAACACATTTATTCGAACTCTATTGTCAATATACATTAA
GCTCAATTTTGAATGCACACACAATGTTCGATACAAATTTTAATCGAACTATTCGTACTT
GTTTGTGCTTTCAGCTTTGAGTGACACGAGTTTCGATTGAAAACTTTTTTTCGATGGTCT
TACCGTTGTCCTTGTTACTGACAGCGACAATGCATCGGCAACGATCGCCTAGTGCAGTTA
CATCAAGAAACCGAAACAATAAAGCACTTTTTGAGTCTTAAAAGCCACAGATTTTATTAG
AAAACATTTTCAGTAAAAATCTCATTCAATTTTATATCGACGATTCAATCACATCACTAT
TCTCGTCGTCGCGGAAGACTAAGGTTTGTAAGCCACATTGTTATAACTTACACTAATTTA
GAGAGAGTGAGAGATAGAGACATTTAGAAATATATTTTCGTAACAAACAAAACATATTTA
GCCTCTACAAATAGTAAAATCGATGTTATATTTATCGATATCGAAAAATCGATACGTGCC
AGTTCTCATCGAAACTCGCTTACATTAGGGCAGTGTCACATTCAGTCATTTACAAACGCT
TCACAGCACGTTACGACACTAATGCAGTTTCAAATCGAGCTGAAAAGTCACTCGATAGTC
ACACGACAATCATTTCACTAAGCTCTTGATGTGCTGCAGAAACTCGTAGTAGGAGAATGC
CGACTCGACTCGGTCGTCCACCAGCCTCTCCAAGAACAGGTGTCTCGACGGGGAATTGTC
TTTCAATATCAAAATTTCGGAGGCGTAAGGTCTGTCGTCGTTGAGTTTGTCTATGAAGGC
GTGCAGCAGCGCGCTGGGCTCG
(2422 bp)

- SilkBase 1999-2023 -