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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoFB_comp10386_c0_seq4
Scaffold_idBomo_Chr18
NCBI non-redundant
(nr)		PREDICTED:_uncharacterized_protein_LOC105391048_[Plutella_xylostella]
Ontology
GO:0000166 F nucleotide binding
GO:0000943 C retrotransposon nucleocapsid
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003723 F RNA binding
GO:0003824 F catalytic activity
GO:0003887 F DNA-directed DNA polymerase activity
GO:0003964 F RNA-directed DNA polymerase activity
GO:0004190 F aspartic-type endopeptidase activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0004523 F RNA-DNA hybrid ribonuclease activity
GO:0004540 F ribonuclease activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0006310 P DNA recombination
GO:0006508 P proteolysis
GO:0008152 P metabolic process
GO:0008233 F peptidase activity
GO:0008270 F zinc ion binding
GO:0015074 P DNA integration
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0016787 F hydrolase activity
GO:0019076 P viral release from host cell
GO:0032197 P transposition, RNA-mediated
GO:0046872 F metal ion binding
GO:0071897 P DNA biosynthetic process
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
GO:0090501 P RNA phosphodiester bond hydrolysis
GO:0090502 P RNA phosphodiester bond hydrolysis, endonucleolytic
Transcript
Level		FPKM:5.25 TPM:5.76
ORF EntryO_BomoFB13494_5prime_partial:A_BomoFB_comp10386_c0_seq4
Sequence
(Nucleotide)
GATTCGCGCGCGTCGATTTAAGTTAATTGTAAAACGTATTATAATTTTAGTTTTAATTTG
TGCCTTGTAGTGCCTAGCGACTTGTTTACTCTTTTTACGTTATAATAGAACATTGTACAC
ATATTACATTATATATATTGTTTAATTGGTGTGTTTGACTTTTATGTGTTCGGAGCATAG
TATCCCGAGAACACGAATAACAAACCACAGTGGTGACCCCGACGTGATTCAGTGTACAAG
TTATAAATATATTAAATCGTTGCATTAACAAGTGATGACTTCAAATAGCGGCAAGATGGA
CAGTACGAGTGAGGTTTGTCGTGTTGGTGTAAAAGTCCCGCCATTTTGGCCCAATGAGCC
CGCGTTGTGGTTTGTACAATTGGAAGGACAGTTCGCGCTTTCAAATATCACGGTTGATGC
GACAAAATTTTACCACGTCTTGGCAAATCTAGATTATAAATACGTGTGTGAAGTTAAAGA
CATTATAACTAATCCGCCAACGGAAAACAAATACGAGAAGATAAAAACGGAGTTGATTTC
GCGGTTATCTGCGTCCCAAGAACAACGAGTGAGACAGCTTCTTACACATGAAGAACTGGG
CGACAGAAAACCGTCACAATTTTTGCGACACTTACGAAATCTAGCTGGATCAGATGTACC
TGACGAGTTCATTCGGTCATTGTGGACGAGTCGTTTACCTAGTCACGTACAAGCGATTAT
AGCAGCGCAAGTCGATCTCCCTCTAGACTCAGTCGCTCAAATTGTTGATAAAATTCATGA
GATTACGCTCCAACCTCACAATCAAGTGGCTGCAACGTCTACGGCAGTTCCCACAACCGA
AGTTTCTTCTTTTACGTTCACTATGGAACAATTGACACGCCGCATTGATGATCTCGCAAA
GAAGATGGACGAGCTGTCGGCTATTTCCCATTCGCGCTCGAGAACTCGAGCACAGTCCCC
GCGCTGGCGTCAACGATCCCGAAGCCGCTCCAGCGTAGATACAAGGCTCTGCTGGTACCA
TCGACGTTTTGGTAACAAATCTACGAAGTGCCGGGAGCCGTGTTCCTTCAGAGAGGGAAA
CGAAACAAGCAGTCAGTGAAGACGGCGACTCCTGACTGCGGTAGTGTGACAGCTGGCCGT
GTTTTTGTAACCGATCGTAAGACAAAAGTGCAATATTTAGTTGACACCGGTTCAGACTTA
TGTGTTTATCCGTATAAGTGCGTACAAAATCGACAATGTGTGAAAACAGACTATAAACTG
TATGCAGCAAACGGTTCAACCATAAACACGTTCGGTTGGATAAACATTTCTTTAGATTTT
GGACTTAGACGTGCATTCTTTTGGCGTTTCGTTATAGCGGACGTCGGCAAGCCTATTATA
GGCATAGATTTTTTGTCGCATTATAACTTATTAGTGGATGCTAGACATCACCGTTTGATA
GACAATATAACGTCGCTCAGTGCTCACGCTCAGCCTGCGTCAACTGATTTATATCAAATT
AAGTCTGTTACAGGTACTTCACGCTATCATGATTTGCTTTCTCAGTTCCCGGACATCACT
CGTCCGGCTGGGGACCTGTCTAAGCGTAAAATTAAACATAATACGTTTCACCACATCCGT
ACCACTCCAGGGACACCAGTATTCAGTCGTCCTCGTCGTCTAGCACCGGATCGACTCCGA
ATAGCCACCCGTGAGTTCGAGGATATGGTAAGAGCAGGTATTGCAGTAAGATCAGACAGT
CCATGGTCATCGCCATTACACTTAGTTCCGAAGAAAAATAATGAGTGGCGCGTGTGTGGC
GACTATCGGGCATTAAATGCGCGTACAATACCTGACCGATACCCGGTCCGACATATAGGT
GACTTTTCACATAACCTTTTTGGGTGTACCGTCTTCAGCAAAATCGATTTAATCCGAGCT
TATAATCAATTACCGGTAAACCCAGCAGATATAGCCAAAACAGCTGTTACGACTCCTTTC
GGATTATTTGAATTTCCGTTTATGAGCTTCGGTCTTTGCAACGCAGCTCAAACATTTCAA
CGCTTCATGGATGAAATTTTGAGAGACCTTGACTTTTGTTATCCTTATATCGATGATATT
TTAATAGGGAGCCAGAACGAGACATTGCACCTGGAACATCTGAAGAAAGTATTTCAACGT
CTCCAGGACCACGGCGTTGTTATTAATGTTTCGAAATGCGTGTTTGGTGAGCCTCAGGTA
GATTTTTTAGGCTACGCCGTATCATCTTCGGGCACCAGACCGCTTCTTCAGAAAGTGGAG
GCGATCCAGAACTTCTCGCAGCCGAAAACTATTAAAGAATTACGAAGATTTCTGGGTATG
GTTAATTTCTATAGACGTTTCATGCCTAAAGCTGCAAATATCCAAGCTCCGCTCCATAAT
GTTTTATCCGGCCCAGCTTTAAAACCCCGTACGCCTATTACCTGGTCAGCTGAATTGCTG
GAAGCCTTTATCGCTTGTAAGAAAAGTTTAGCTGAAGCGACATTGCTAGCTCATCCTAAC
CCATCGGCAGCTTTGATACTCTGTACGGACGCTTCTGATAATGCAATCGGTGCCGTACTA
CAGCAAAAGACAGATGAAGGGCAACAACCACTCGGATTCTTTTCAAAAAAACTGAACAAA
GCTCAAAGAAAGTATAGTCCGTTCGATAGAGAGTTGTTAGCTATCTATGAAGCAGTGAAG
CACTTTAGACATATGGTGAAAGGCAGAGTTTTCACTGTGCTTACAGATCATAAACCCATA
GTCTCAGCATTCCAAAAAGCATCAGAAAACTGTTCTCCGCGGCAATTTCGCTATTTTGAT
TTTGTGTCACAATTTACAACCGATGTACGACATATTTCAGGAGACGATAACGTAGTGGCA
GACGCTCTTTCCCGCACAGAAGCAATTACGAGTGAGCTTGATATGCATGCTTTAGCATCT
TCGCAAAAAGACGACCAAGAACTTCAAAAACTGCTAGAATGCGGCTCTTCACTTGACCTG
CAGAAAATCAACATTTCTGGTTCGGGTGAGAGCTTATATTGTGATACTCGTAGCCCTTCT
CCTCGACTTTATCTGACGTCACAGTTTCGTAAACAAGCGTTCGATAATATTCACGGGTTG
AGTCATCCAGGAGTAAAAGCTACTGTAAGATTGATGACACAGAAATATGTCTGGCCTAGC
ATTAAGAAGGACTGCAGCAACTGGCTACGCACCTGTCTCCCGTGCCAGCGCGCAAAAATC
ACACGGCATATACAGTCTCCGATACATGCGTTTATTCCTCCATCTAATAGATTTAGTCAC
GTTCATATAGATCTCATTGGACCTCTGCCAGCTTCACACGATTTTAAATACTGTCTTACA
GTAGTGGACAGATTTACACGTTGGCCAGAGGTTATGCCGCTCTATGATATCAAAGCTGAG
ACAGTGGCAAGAGCTTTCGTTACGGGCTGGATATCACGTTTTGGCTGCCCAGAGAAAATT
ACGACGGACAGAGGTAAACAGTTCGATGCACATTTGTTTAAAGAACTTTCTAGATTAACA
GGAACCCATCATATTCAAACAACAGCGTACCATCCAGCCGCAAATGGTATGGTCGAAAGA
TTCCACCGCCAGCTCAAATCGGCAATTATGTGCCACGAGAACGATGAATGGTATGAGGTT
CTACCTTGGGTACTTCTCGGAATACGTTCGGCATGGAAGGAAGATGTTGGTTCGTCATCT
GCAGAGTTGGTGTATGGAGAACCCCTACGATTACCGGGTACATTTTTCAACACCTCGACA
ACAGAAGTCGTAGACCATAATGATTTTCTTTCCCGTCTAAGAGCCTACATCCGAAAGATC
AAACCAACGCCTGTGATACATCATGGTACTTCTCCAGTTTTCATAAGTAAACAGTTATCA
TCTTCAAATCAAGTTTTTCTCCGCCAAGACGCTATTAGAAAACCTCTGCAGCCGCCATAC
ACAGGACCCTATACGGTACTAGAACGTCGAGATAAATATTACAAAATAGATATAAAAGGA
AAGTCTGCCACGGTATCATTAGACAGATTGAAGCCGGCGTACATCTTAAGCGACTCGGAA
TCTCACTTTGCTGATTCATCTCCAAGCATTTCACGTTCAGTGCAAAGAACGAAATCTGGA
CGTCAAGTACGCTTTCCCGATTTTTATCGACCGTAACGGTCTCCGGGGGGGCTGATGTAG
CGTGCAGCATTCGGTTGCACTCGGGCGTCATCGGTCGCGATCGGAGTTCCCGAACGCGCA
GGTGTCCCGTGACGTCACACGGCGAGATTCGCGCGCGTCGATTTAAG
(4307 bp)

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