SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoFB_comp10205_c0_seq6
Scaffold_idBomo_Chr3
NCBI non-redundant
(nr)		PREDICTED:_Niemann-Pick_C1_protein_[Bombyx_mori]
Ontology
GO:0005319 F lipid transporter activity
GO:0005576 C extracellular region
GO:0005635 C nuclear envelope
GO:0005764 C lysosome
GO:0005765 C lysosomal membrane
GO:0005768 C endosome
GO:0005783 C endoplasmic reticulum
GO:0005887 C integral component of plasma membrane
GO:0006486 P protein glycosylation
GO:0006629 P lipid metabolic process
GO:0007041 P lysosomal transport
GO:0007165 P signal transduction
GO:0008158 F hedgehog receptor activity
GO:0008202 P steroid metabolic process
GO:0008203 P cholesterol metabolic process
GO:0008206 P bile acid metabolic process
GO:0015485 F cholesterol binding
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0030301 P cholesterol transport
GO:0031902 C late endosome membrane
GO:0042632 P cholesterol homeostasis
GO:0048471 C perinuclear region of cytoplasm
Transcript
Level		FPKM:2.55 TPM:2.79
ORF EntryO_BomoFB12468_complete:A_BomoFB_comp10205_c0_seq6
Sequence
(Nucleotide)
AGAAAAATACTAATTGAAACATTTAATATGCGACTTGTTTTAATATTGTACAGCATACAT
GGACGCGTTGTTTGCGTGACGAAATTGTATTATACAATGTTTAGCTGAGCATTTTTATTT
GCAAATATAATTCCCTAGGTTGTTAGGGTACAATCAAATACTCCCGTGTAAACGTTAGCT
AGCACTAAAACATTCGACGTTCGATTTTTTTTTTAATTCATGGATAGCGCGCAATGTAAC
ACAAAGCTGTCGTGCCGGGTAAACGAACTCAAACGAGACGGAGGCGGCTTGCAAGTGACA
CTAAATACTTTCCGCGCGTCAAACATCTATTGTATCTAAAATCTGTTATAGCAGTCGTAC
GGACAGACACGTTCTTAGATCTTAAATGTGACGAAATTAATGCGAATTAACTATTACTGT
AATGTCTTGATTTGTTAATACTTAAAGTTTTTTTGCTCTTCCAAAAATGTATATAAAACA
TTTTATGTATTTACTTATCGTCTTATATGGGCAGACTGAGTGAACTAGATTTTTTTCTGC
CATTATAATGTCGTATAACAAACAGTACTTAGAGTAGACAAACAGTTTCCTAGCTTACGT
TTACGCAGCCTCCGCGCGTCTCAGCTAAACATCGTCCGTGCAAGCTCACGAGGGTATCGA
GTCGAACGTGTACTCTCTGTAATATGTGGGGTGGCCGTGTCTTACTCGTGTGAGCGAACT
TTCGGCGACCGTCGTCTCGTTGCCGCGCCGCCTCTGGTTGGCCAGCTTCTGTTTGTTAAC
CGGCGAACCGATATAGCTGAGCATAACCGGCAGGAATACGAGTCCGTGGGCCGCACCGAA
CAGCACAATCCCGAGGTACATCCGGAAGTAGAACACCTGGAAGATCTGGCTCTTGGCCGT
GGCGAGCACGATGATGCCGCCGAACTTGGTGAGCGTGATGCCGGACAGCACGGACGAGCC
CATGCGCAGCAGCGCGTCCGCCGCGCGCTCCCCGCGCCCGCGCCCCGCCGACACGCTGAA
CGAGTGCACCAGGTGCGAGCAGAACTCCACCGATATGCCCACCGCCATCACCAAATTTAC
AAGCGAGACTGCATTCAAACTGATGCCCCACCAGTACATGAGGCCGCCGAGATTAACAAC
AATCATAGTGATGGTCACTACGACTACAAGAGCCGAGAAGAGATCGAAGCCCATGAGCAC
GAAGGTGACGAAGAATATGGAGAGCACGGAGATGCCCATGCTCTTGAGGGTGTCGGACCA
CATGGTGAGGTACTGCTCGTAGAAGACGTAGAAGACCGAGTAGGGGAAGACGTTGACGGT
GGCGGAGTGTCCCAGGTCGCGGAGGTGCGCGTTGAGCGTCTCCGTGAGCGAGCCCGCCAG
CGCGCGCGCCGCCCGCAGGCTGCCGTAGTAGTCCGAGCTGCTGCGCAGGACCGTGTGGTA
GCTCTGGTAGTAGGTGGCGCCGATCCCGGTGGTGTTCTGGCTGTGCGAGCGCAGGTTGAC
GGCGTGCGAGTAGGCCGCGTGGCCTCCCTTGACGCAGCGGCTCGACGGGTTGTCCTGCAG
GAAGTACGGCAGGTACGTGCTGAAGTCCTGCGGGCTGGGACGCTCTTCCGGCTGCACCAA
CTTTATGTTGCAAGCGGCACAATCGTCGGGTTGAGTGTCGCTGGGACAGAAGCTGTTGTT
GGACTGGAAGTAGAAGCAGCACTCCGGTGAGACAGACCAGTCGAAGAAGTCGTCGAGCCA
AGAGTTGGCTGGAGCCGCGATGTACGTGTCGGCCGGGCTGCGGGACGCAGCGTATATCTG
CATGGCGAGACTGTCGGGTCTACAGAACCTCGAGCCGCACAGCAAGTTCTGCACGTCGGG
GGTGGAGTAGTTCAGCTTGGCGTCCGTCTCGGCGTCCGTGAGCACAAAGTAGACCGGCGG
ACCGATGTTCAGGTAGCGGTTCAGATGCTGGAAGTACTTCAACTGGAAACTGTCGTGGGG
CATAGACAGCTCTTGGTCTAGTCCGATGTCGATGTGAGGCGCTACAGCAACAGACGAGCA
GAGCCAAGCAAAGAATATAATCATGACTGAGGCTCTGACTTCCCTCTTCATCAGGAAAGG
TACATAGAAATGTTGAAACAGGTTGTACAATGCTCCTTCACCTTGTTCTGCCAGGTCTGT
TTTGGTGCCCCGCAGACAGCAGAATATATCGAACCTGTTGTCGAGTTGTCGGCGCGTGTC
CAGCGCCAGCAGCGCCACGAAGCAGGTGACCTGCAGCAGGAAGTCCACGAGCAGCGCCAC
GGCGGCGTACAGCGCGAAGGCGCGCACGGCCGGCATGTCGCTCAGCGCCCCCAGGAAGAA
GCACACCGACTCCGACACCGACGTCACGAACATCGACGGGCCCACCTTGCCGAGCATTCT
ACCGATGTGTTGCTCGACGGTCTCGTCGGGGCGGCGCGGCTCGCGCTGGTGGGTCTGCAC
CAGGATGAAGATGTTGTCGACGCCGACGGCCAGCACCAGGAACGGGATGACCTCCACGAT
GATAAGCGTGGCCGCCACTCCATAGAACCCGAAGATGCCCATGGAGCACACCACAGACGC
CAACACGATAACCACACCGCCGAGCCCGAGCGTGATCTTGCTGTCGATGAGCAGCCGCGA
GAAGGTGGTGAAGCGGCCGAGCGCGATGGCGATGTACGCGAACATGATGAAGTAGGACAC
GAGGATGGTGTACACGTCCGACTTGGACTCGCGGTCCAGCTCGTCCTCGATGGAGCGCTC
CGACGTGTACGCGATGTCCATGTAGCCCGGCATCGCCTTCTCCGTGTAGTTCTTCATGAA
CGCAATGAACGTCTTCTCCCACTCCAGTGCTTGTTTCAGCTGGGACTTGTCCTGCTTGTT
GTTGACGAGAAAGGTGAGGATGAGTGCCTGCGCGCGGTGGTAGGGCGCGTGGGCAGAGAG
CTGGTCGCCGCGCGGCAGGAAGCCGCCCAGCGCCACGCCGGGCAGGACGGGCCCGCCGTA
CGACGACAGGCAGTCCACCGAGATCGGGTTGCTGGAGCACTGCAGGATCTTGTCCAGGTG
TTCGTTGTCCTCGTAGGAGAACTCGGACTTGTCGTTCTGCCACCAGCCCCACACGCTCTG
CAGCACGCAGTCCTTGCTGGTGACGGGGCCGCGGAAGGGCGACGACAGCGGCGCGTAGCA
AATGTTCTGGATCCCGGACTCGTTGCCGAGCTCTAAGATCTTGGACTGCAGGTCGAACAC
GTCCAGCATGAAGGTGGCGTTGAACACAGGCCCGAAAGTCAGGTTCGCGTGTTCGATCTC
GGGCAGACCTTTCGAGCTGATTATTAACATTTCTGTCCTGTAGAAAGGTTCGAAGTAGGA
ATCGAACCGCTGCCTCTCGACCCTGGAGCGCGAGGTGGGCGAGGCCCACAGCTCCACGGG
GTCGGTGGTCACCTGCATGTACGTGATGCCGGAGCCGAGGATCACCACAACGCACAAACC
AGAGAAGAGGACCAGCCAAGGCGAGGAGGCCATGACGCAGCCCCACCACTGGAAGAAGTC
TTCAATTTTGGATTCCGTCGCAGCACCGAGCTTCTCGAGGAACGTCGCGTCTGTCTCGTC
GCCATCGGTGGCCTCCATGGTCCAGCGCGTGCCCGACGCGTTTGTTCCCATCTCTTGATT
GTTGTCTGAAGACACACCGTGCGTATGCAGTAGGGGCGGGTACGTACTGGCGCGGCGCTC
GTGCAGCGGGCTCGTCTCGGGGCCGCACTCAACGAGGTTTTCGGTTTGATTGCAACAGAA
GACGCCCGTGAGGAACAGCGTCGAGAAGATACAGAATACGATGGTCATGACGATTGCGTA
GCCGTCGAAGCCCGCGATGGAGAACGGCTGCGGGGGCGGGGGGCGCGGCGGGGGCGCGGG
GCACGACGCCTCGCAGTCCAGGCACGAGCAGCCCGGCATGCCCTTCGTTCCGACATTGCA
GGGCTCGGCTATCGGAGCGTAGGGCGTGTACCCATCGACGGGCACGTCAGTGGCCTTATA
GTTAATCTGGAAGGGCACTTGATAGTTGGAAGCGTCCCCCATGTTATCGAACCAACGTTG
CGCCGAGCACGCGTCTCCCCACTGACCGCACATCACCTTTATGGATCGCTCGTTTGTTGA
CGTAAGCTTAACCTCAGAGCATGAGTTGTAGATGCCATCCATGAAAGTTTTACTCAGGTA
GTAATCGATCTCAGATATCCTGCGATGTGTACCGTTGAACTGTTCTGTTTGAACTGGCTT
CAAGTATTTGCTCTGATCGACGGCGCAGGCCATTCCACAGATCGGCTTCAAAAAGTTCTG
AAAGCACGTCGGGCATCTCCCCAGCAAATTTTCCGCAAGGGCGATATTCACTTTGAGCTG
GTTCAGTTGTTCGTAATTGCAGCACGAATAACCTCCTTTGGCTATCTCGGGACAATATTG
CTCAATTATTTTCATTGCCTTTTCTTCGATCGGTTTAGCGGGTCCATCATAGAAACAATT
CATCATTTTATGTTCTGTGCTGTTCGCACAAACGCCGTACCATATGCAGTGACCATCTTC
GGCCAGAGCAGACGGGATATGTTCTACTAACACCAATAGAAAAAACAAGGCAGATAGAAA
TCGTCGCAAAAAACTTCCGCGATCAGCCATCTTTTATCCTTATTTTTCACAATGAAATGA
TTAGATTCAATTTTATTAGCATATTATAATTAGAGCTTGTCCAAAAAATACGTTTCTCTA
ACGTGAGTTACGTAGAGTAAAAAATAAAATAACAAAAATCATAAATAAATTATTTGTCCG
ACATAACGCACCACTATCGCGCACAATTAGCTTCCCG
(4837 bp)

- SilkBase 1999-2023 -