SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoFB_comp10174_c0_seq4
Scaffold_idBomo_Chr6
NCBI non-redundant
(nr)		PREDICTED:_splicing_factor_1_[Bombyx_mori]
Ontology
GO:0000245 P spliceosomal complex assembly
GO:0000389 P mRNA 3'-splice site recognition
GO:0000398 P mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0003714 F transcription corepressor activity
GO:0003723 F RNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005840 C ribosome
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006397 P mRNA processing
GO:0008270 F zinc ion binding
GO:0008380 P RNA splicing
GO:0030238 P male sex determination
GO:0033327 P Leydig cell differentiation
GO:0042802 F identical protein binding
GO:0044822 F RNA binding
GO:0046872 F metal ion binding
GO:0048662 P negative regulation of smooth muscle cell proliferation
GO:0050810 P regulation of steroid biosynthetic process
GO:1903507 P negative regulation of nucleic acid-templated transcription
Transcript
Level		FPKM:7.47 TPM:8.18
ORF EntryO_BomoFB12197_5prime_partial:A_BomoFB_comp10174_c0_seq4
Sequence
(Nucleotide)
GCGCCCCGGACTCGCCCAGCTCCGCCATCAGCGACATGTACTCCTCATCTATCTTAGCCT
TATCGGGTTGGTGGTGGCCGGGTCTGCGGGCGCGGCAGTCCCTGGCGATGTGCCCGGCGC
CGCCGCAGGAGGAGCAGACGATGGCGGAGGTGACGTTGGGCTTGTCGGGACAGAGCCAGG
TCTTGTGGTCGGTGGCGGAGCAGTTGGCGCAGCGCGCGGCGTCGTGCTCCCGCAGCGTGC
CGTTGAGCTGCGCCAGCTCGCGGAGCTGCATCCGGCGGAGGTCGTTCTGACCTTCCGGCA
CCTCCACGCCTTGGCGGATCACTTCTTTAATCTTCTCGACGGCCTTCTTGACGCAGTCCG
CGTTGGTGGCGGTGATGTAGGCGTGCAGCGGCTCGTCCTCCCCGGGCAGCGGCTGCCCGT
CCTTGCGCCCGACCTTGCCCTCCTTCACCGAGCCCTTCCCACGGATTATTATCTTGGCTC
CGGTTTCCTTTTCCATCGCTTTAAGAGTGTTCCCTCGCGGCCCGATGAGGAGTCCGACAA
AGTTGATATCGGGGTGCTCCTCCTGGGGTATCATCACTTTGTCGTGCACCCTTATTATCG
GCGGCTTGTAGTCGGGCGGAGGTTTGAACTCAGGGTTGACCTGCTGCATCCTTTGCACCA
GCCTGTGTCTCTCTTCCTCAAGCTTCCTCCTGGTCCTGTACTCGCGGGTGTTCAGCCTCT
TGCCGTCCGTCGAGTATATGGGCTCCGGCGATGGTGATCTCTCTTCGACGTTGGCCGGAA
TGCCGAGGTCGCCGGATCTGAGCTTGCGGCTGACCTCCTCGATCTGCAGCTGCAGCAGGT
ACTGTTCCTCCTGGTCCTTGGTGAGGGTGGAGGGCAGCACGGTGGGCAGGCCGGGGATGA
ACGTCTTGTCGTGCTCGGAGCCCGTCCAGCGCGGGCGCCGCCGCCGCGCGCGACGCTCCG
CCG
(963 bp)

- SilkBase 1999-2023 -