SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoEE_comp70435_c0_seq7
Scaffold_idBomo_Chr13
NCBI non-redundant
(nr)		PREDICTED:_ER_degradation-enhancing_alpha-mannosidase-like_protein_2_[Papilio_machaon]
Ontology
GO:0001948 F protein binding
GO:0004559 F alpha-mannosidase activity
GO:0004571 F mannosyl-oligosaccharide 1,2-alpha-mannosidase activity
GO:0005509 F calcium ion binding
GO:0005783 C endoplasmic reticulum
GO:0005788 C endoplasmic reticulum lumen
GO:0006491 P N-glycan processing
GO:0006986 P response to unfolded protein
GO:0016020 C membrane
GO:0030433 P ubiquitin-dependent ERAD pathway
GO:0030968 P endoplasmic reticulum unfolded protein response
GO:0036509 P trimming of terminal mannose on B branch
GO:0044322 C endoplasmic reticulum quality control compartment
GO:0097466 P ubiquitin-dependent glycoprotein ERAD pathway
GO:1904154 P positive regulation of retrograde protein transport, ER to cytosol
GO:1904380 P endoplasmic reticulum mannose trimming
GO:1904382 P mannose trimming involved in glycoprotein ERAD pathway
Transcript
Level		FPKM:4.11 TPM:7.16
ORF EntryO_BomoEE22563_complete:A_BomoEE_comp70435_c0_seq7
Sequence
(Nucleotide)
AATTTTTGTTCGGTTGCTTCATATCCCTATTTCTGAATGATTCACAAATGAATTTAAGCT
TTATAACATTAACTTAAGATATAAAATTTGCATGCGTGTAAAACATAACCTAGAACCTAA
TGTAATATAAATATATATAATCATATATATAATCAAAATATAAATGATCAGCTGGAAACT
ATGGGAAAGTTTATGCAAATGTAAATAAATATAAAAGACAAAAAACTAATAAAAATGGTC
AAATTAACCTTCCTGATCAGTATTTCAGTGTTGACTTGTAATTTAATTTTAAGTGTACGA
GTATACAAACGTGCAGATATACTTAAACTAAGAGAGGAAGTACGTGAAATGTTTCAACAT
GCATACGACAGCTATTTAAGATATGCATATCCTTATGACGAATTACGTCCATTGAGCTGC
GACGGTGTTGATACCTGGGGCAGTTACTCACTCACCCTCATTGATGCATTGGACACGCTT
GCCATTATGGGAAACTATAGTGAATTTAATCGAGTAGTAGATATAGTACTACAGAAAAGA
CACTTTGATGCAGACATTAACGTTTCAGTGTTTGAGACGAATATTAGAATTGTTGGCGGT
TTATTGAGTGCTCATTTACTGTCACATAAAACTGGGATGAAATTAGAACCAGGCTGGCCA
TGCAATGGTCCTTTACTTCGTTTAGCTGAAGATGTAGCACAGAGACTAATAGCTGCATTT
GATACAACTACTGGAATGCCTTATGGAACAATTAACTTGCGATCAGGTGTTCCACCTGGG
GAAACTAGTATCACATGCACTGCTGGAGTTGGTACATTTATAATTGAGTTTGGTACTTTG
AGTAGACTGACAGGAGATCCATTGTATGAAGAGGTAGCTTATAATGCTTTGAAAGCCTTA
TACCATCATAGATCACCAATTGGTCTCCTTGGCAACCACATAGATGTGATGACTGGACGC
TGGACAGCTCAAGATGCTGGAATTGGTGGTGGAATCGATTCTTATTATGAATATTTGGTT
AAAGGTGCCATACTACTAGAGAAGCCAGAGTTAATGTCCATGTTCTTAGAAGCACGTCAA
TCTATTGAGAAGTACCTGAAAAAAGATGATTGGTTTGTGTGGGCCACTATGTTGCGTGGG
CACGTCACCTTACCTGTCTTTCAGTCTCTTGAATCATATTGGCCAGGTCTTTTAAGCCTC
ATAGGCGAAAGTGACGCAGCGATGCGCATAATTCACAACTACCACAGCGTGTGGCGCCAA
TATGGATTTACACCTGAAGTGTACAATCTCGGGACGGGTGAGGCGTCTTCGTCACGCGAG
AGTTATCCCCTACGACCCGAACTCATAGAGTCAATCATGTATTTGTACCGAGACACCAGA
GACCCTATACTGTTGCAAATGGGCGAAGATATTCTGAGGAGCATACAGCATAGTGCCAGG
ACACCGTGTGGGTATGCAACGATAAAAGATGTTCGTGACCATCGTAAAGAAGATCGCATG
GAATCGTTTTTCTTAGCCGAAACCACAAAATACCTGTACCTACTGTTCGATCCGGATAAT
TTCATTCACAACCCTGGGGTCCGCGGTACTGTCATCGACACACCTAATGGCGAATGCGTG
GTCGACCTTGGCGGATACATCTTCAATACAGAAGCACATCCGATTGACCCTAACATGCTG
TATTGCTGCCATGAAGCTAGACAAGGTATAAATATCAGCGAGGTTTACAGTATATACCAA
ATTTTGGAAGAAGAAGATAATATAAAATTTATGACTATGATAGAAGCGAACACCAATGAA
ACTAAGATCACTCAATCGAACAACAACAATAATGAGAGTGCAATAGAAAATAAAACAATT
GACCACACAGAACCGAAGGAAAGATCAGATGAAAACGAGCCTGAACAAAATCAAGTATTG
ATAAAAACTGAATCGAGAACCGGATACGTCAACCTCGACGGAACGGAAAGGGAGAACGCA
AACGAATCAAACCTCAGTGATCTTGTTAAAGAGACGATCAATAAATATTACAACGACACT
ATAAATGCCGAAACACAAGAAAATGTTAAACATTCAGCCGAAGAACCAACGGCAGGATCG
TCGCAAACCGTTGAAGTGGACGACATAATCGTGCCAGAGAAATCGGAGGTGCAACTGCCA
AGCGTCACGAAAACGAAAGAAGTAATGAACATGCTGCCAAAAGTTATACAAGACTTTTTG
AACAGCGATTGGAAATCGAAACCGAAATGCGAACCGCAGAAGATGTTAGAAAGGATACGT
AGAGAACAGAAGTATCCAGATCACCCGGATGTATATAAGTACGAGTTATTATTGACGCCG
GCTCCGTCGTTTCTACAAAGAATATCGTTGGCCGGAGAGTTCTTAAATAAGAAGCAACTG
GAGTTGTGATATTTTGTTCGACTGATTAAGTTTATAGGGGGATTTTTTATTTTAATTATT
TATTGGTATTTTCATTAAAATATTTATTCTGTTTAAAAAAAAAAAAAAAAAAGA
(2514 bp)

- SilkBase 1999-2023 -