SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoEE_comp70239_c0_seq7
Scaffold_idBomo_Chr23
NCBI non-redundant
(nr)		dicer-2_[Bombyx_mori]
Ontology
GO:0000166 F nucleotide binding
GO:0003723 F RNA binding
GO:0003725 F double-stranded RNA binding
GO:0003727 F single-stranded RNA binding
GO:0004386 F helicase activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0004525 F ribonuclease III activity
GO:0004530 F deoxyribonuclease I activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006309 P apoptotic DNA fragmentation
GO:0006396 P RNA processing
GO:0007279 P pole cell formation
GO:0007294 P germarium-derived oocyte fate determination
GO:0007367 P segment polarity determination
GO:0016246 P RNA interference
GO:0016442 C RISC complex
GO:0016443 F bidentate ribonuclease III activity
GO:0016787 F hydrolase activity
GO:0016891 F endoribonuclease activity, producing 5'-phosphomonoesters
GO:0030422 P production of siRNA involved in RNA interference
GO:0030727 P germarium-derived female germ-line cyst formation
GO:0031047 P gene silencing by RNA
GO:0031054 P pre-miRNA processing
GO:0033227 P dsRNA transport
GO:0035087 P siRNA loading onto RISC involved in RNA interference
GO:0035196 P production of miRNAs involved in gene silencing by miRNA
GO:0042078 P germ-line stem cell division
GO:0042594 P response to starvation
GO:0045448 P mitotic cell cycle, embryonic
GO:0046872 F metal ion binding
GO:0048813 P dendrite morphogenesis
GO:0070883 F pre-miRNA binding
GO:0090501 P RNA phosphodiester bond hydrolysis
GO:0090502 P RNA phosphodiester bond hydrolysis, endonucleolytic
Transcript
Level		FPKM:1.69 TPM:2.94
ORF EntryO_BomoEE21736_complete:A_BomoEE_comp70239_c0_seq7
Sequence
(Nucleotide)
AGTGTTCATTGGAGGCATCGAATATATTATAACATGTCTATTTCTTATATGTCTATGTGA
ATAACGTTCCGTTGGAAATTAAGAGTCTAATATTTTGAGAGCTAATTTCGCGGCGGCCCT
CTTCGCTTGCGATTTGTTGACGCCGACTCCGTAGGCGGCGAGACGCTGGTCGTTCTTCGT
GAACGAAACCGGCACCATTACCTTCGGGATGTCCGGATTGACGACTATTTGTTTTTCGAA
AACCGGACAAGCGTGTATCATTTCGTATAGAATTTTGACGGGCTGCTTCGGTATGCGTTT
CGAGAACGAATCGATCTCGACGTGCATTATCTTGTACAGAACCGACCACACCGTCTCCAG
ATTCCCGCCCGAGTCCAAGTACACGGCGCCGACTAATGCTTCGAAAATGTCGCTCAACAC
CTTCGGCACATCAACATATTCAGCGACTTGACAATCGACTTCGCTGATAAGTAACAGAAC
GTCGAACTCAATCTCGTGATTTCTTTCTATTTGATGTTCGACGAATTTCATTATCGCCTT
CTCCAACGAAGGGTTCAGCTCCGAGCAGAGGTACTTGTGCAATCCAAGTTTGACGGTGTA
GGCCGCGAACGTGACGTTATTGACGAGGGCGGATCTCAGGTCAGTCATTTCGCCGGGCTT
CAGTTCGCGACAGTTCTCGAAGATGTGTGACGTCACCAGGAAATCGATTATGGCGTCCCC
GAGGAACTCGAGGCGCTCGTACGAGCTCGTCAGCCTGTTCCGGATGTACGACGAGTGAGA
CAGAGCGTTTAGCAGGAAGGTTGAATCTTTGAACGTGTAGTTTAGGATCTTTTCGACATC
AGTTCTCGAATTGTTTAGTAAAAAGTCAATATCAGCTTCGGTAGCTAAATTCTTCGATAA
CGGTGTTTGCACCGGCTTGTGGAGCATGTCTGCAAAGTTATCCTGTGGCGGAAACACCTC
CATCCATTCAAGTAGTTTTACAGCTGCTAATATCCCTCCACTAAGTAGATATGTGCCGAT
CAGAGCTTCCACGGAATCGGCTATAGATTTGTCCGCAACTGCTTGTGAATGTACATAGCA
TTGCATAGAATTTTGGGCACAGCCTTCGGGTTCTGCCTCAGCGATGCCATTTTGGAAATT
ATTCATCACAGATTCCCAGCTTTCTTCACTTAATTCACCGGTCATTACTTCCTCTTCGGT
GAACTGTATGCCGATTAAGAATGTTGGACGAATTTGTCTTTGTTCAATAAATTCTTCCAA
TTTAGGGGGCGCAAAGAAACCTGGGACGAGGAAGTCACTTCTAGGGCTGAACTGCTCCAC
CTTCATGCGTCCACCCAAGTTGAATTTCGCACCAGCGTAATATAAATTCCTGTTACTGAT
CAGCTTGCCCTTGATGTTCGTTAGTTGACCCTCGTTCATGTTCGGAAACTTGTGGTGCAG
GTACAGGCTGGCGGCGAACTTCAAGAACGAGTCCCCCAGTGTCTCCGGTCGCTCCAGATC
GAAGGTGTCGTTTGAGTTGATCGTGGTGAGCGCGGCGAGCACGTCTCTCAGTTCCGGACC
TCGCCCGGTCGGCGTCTTCTTTAATATTTCGATTTTATCAACGTACTTGATGGGCGGCGG
TGCTATAGCTGGGGCCTTAGGAACGATTCTCGGCGGGGAACAAGGGTTGTTCGATGCAGA
CGATATCGGAGCCGACACAAACTCGTCGTAACATTCTATGTCCATTAACGTGATGGTCGA
CAAGTTACGCTCTACGTCGATGGGTTCGATTCGTTGATCCCAGGGGTACTCTTTGTCGAT
TTTCTTTCTTTGCAGTTTATATAAGCTCTTTTTTAACGGTACAACTTTCTTCAAACAATC
ATCTGTGCCTTTGTGTATTCTGTCAATAGTGTGGACATGAAGTGGTTCTTCAACTTGGGA
CAATAATGAATTTATGGCTATATACCGGTCCACTTGTATCGGTTGAAATGATTCCGTTTT
TTTCAAAATTGGTTGCCCGTATTTAGTGGCGTTTGATATTTCCACGAGCAATTCATGTGC
CACTAACAACATGTGAACTCTGTGAATAATACTGGGCAGTAGCGTTGCCTTATACCACAG
TACTCCTGGGTAATCGTATTTAATGCAGAATTCCGGTATAAATATCTCTGCAAATCCCTT
CGGTTTATCGTCGCCGAACGCAATCGATATCATCTTCAGCTGCTTGTCTGTGAACGCTTT
GAGCGTTGCTGCTCGGGGTAGGAGGCAGTTCATCCGCGTGCTTATGTTACGTACCTCCAA
CAGTGGTTGACTTTCACTTCCTAATATATCCAAGTTATAGTTGTTTGCATAATAATTTGC
ATACGATTCATAGCAGTCAGCATCGAATTGAGATTTCGGCGTCATGTATTCGAGAACCTT
CGTCACGACGTACCGTTCAGGTAGAATAGTCCCGCGATACCAGGGCGTTACAATGCAATT
CGTGTAGTTTTCTTCTGTGACTACCAGCGATTTTCTTTCCTCAACTGAAGGCGCGGCGAC
CGGTGGCACCGTGTGGTGAGTCTGCATTGTTGCCCAGTCAATGTTGTATCCATTATGTTC
CAGTACCGGGACAACGTACATGCAGTTTTTAGTTCCCTCGAATATCAGAAACTTCTTATT
GATCGCCAAGATTTGGTCGAATAGAAAATAATGGAATTGCTTCACTAGCTCGAATATAAT
CGGGGTCAGTTTTATAACTGCGTAATTGACTTCTATTGACGTGGTGATTTCTCCAACGGA
CGTGAACGCTGGGAACTCGCACAGTTTAGGCAAAGGCTTCTGCGTCAAAAACCCGTAGCA
TTCGTTTCTCTTTATAAAATCGTACAAAGCCTTTTCACGATTATCGTTGGGTTTCTCGAA
TGCCGCCTCCATTTTTATTACGTGAAGATAGAATACCGAACTATCTGGTACTGCGTCTAG
GTGTGACGGGAACTGTATTTTATGCTTTCGTTTTCGTTTCTTGGAACCAGGCTTGGGTAC
ATTCTCTTTGATCTCGGTCTCGCAATCTTTAGTCCAGTTCGGAAAGCAGCCACGTATGTC
ATCTCGTTCGTAATCAACTTCCGCGTATTTGTACGGGAGTAATGTTAACGGATGAAGTTC
GCCCAATTCATGTAGCTTAATGCACGCCTTCAGTGCAGCGGAGCGTTTAGCGGTTTTCGT
ATTTGAGTACGGGTCACCCTTAATTTCTTCTTTGACGGGGGATCCTATGGGAAGTATGAC
GGTGACCTGTTTTTTAGCTCCGTTTTCAACCACCTCTTGCAACCAAACCGGAGTGATCGT
TGTGAATTGATCGTGTGGTAAAATCGAGCAATACCGGCTTAGTAAACTAATTGCTGATAC
GGAATATAATATATTGCCATTAGACGTTTCGTATGGGGGAACCTCGTCGTCATCATACAA
GTTCTCATGAATGTCTTGAGTTGTGGGAGCGGCGCGGCTGTCATCGCCGACTATGAGATT
ACGAATACGTTCTTCGGTTTTTTGGAACGCGTCGTATTTTATTAAGAACGACTGTTTGTC
TTCAATATCAACGAGTATAACGAAACTGGCTTCAGAACTTCTTGCACGACCTTTGCTTTG
GATATAAGATCGATATTCGGTTGGCGCATCGTATCGGACAACTAACGCACACTGAGGTAT
GTCCAAGCCTTCTTCGATGACGCTCGTCGATATCAAACAGTTCAGGTCTCTCCAGGCTTT
TCCAATATCAAAGGGTTATATTCCTTCAGCAAGTCAATCAATTGTAAAATCTTTTCCGAT
GAATGTTTTATTATTTTATCGTACCCAGTCTCGTTTTCCATGGCGTCCAAGAGTATCATG
CGAGCTTCTGTGGAATGGGTGATGACAGTTGAATACAACAAATTTTCCTCTTTTGTTGAT
GCTTTACGTTTTAATCTTTCTAACAAGACAATGTACGCCAGAATACCCAAAGATCCACCA
TACAAACCCATCTCTTCGAGATTTGTTATCATTCCTACTATAAGATTTTTTACCGCCTTC
ACAATCTTGTTAGGGTCGTTCGAAATATCTCGTTGGCATGGTGTCTTTTTAAAATCTTTT
GATGGCAGAGAGACAGGCAACTTAACACTCATCACAAGATTTTGTAGCGTATTAAGTAAA
CTTATCGCTTCCTTAGCTGCTTCCGACATTTGAGGCTTCCTGAAGTACTGTATAAACTCC
TGGGGGTTGGTAGAGTAAGTCATAACTTCACCAAGATCATCAACAGTTGCGATGGTTGCA
TGAAACGTGTTTTCCAACTGCTTAAGTGTTTCCTCGATCTTAGATATTGATACATTCCCA
TTCAATAATGTCGCCGTTAAACCTAGAACTCTGGGCTGTTCGTGAGCTTTACAATTCAAA
AAGTGCTTCATTATAACTCTCATTGGATGGTCTTCCACAGCATGATGACATTCATCAAAT
ATAATCAGATTAATATCCTCGATTCTTATATATGCATGTGTAAGCATGTCACTTAATATC
TGAGAGGTCATTACAATTACCTGGTTTCGTGCCAATTCAGAGTCCCAATCGGCTTTCTTC
CAATAGTCTACCCCATCTTCGCTACTATAGGCACCAACACCGTCGACGGGACACATCATT
TCAATTACATTTTTCTGTTGATTTACTAACGGAACTGTGTTTACAAGAAAGAAACTGCGT
TTCCCACCTTCTCCCCAAGGCTTTTTTAATTGGTTACGGAACTTTTTTATAAGCCTCTGA
GCAATAAAAGTTTTTCCAGAACCAGTAGGCAAATGAATTATTGTATTTTTTGAACTTGCT
ATTTCTTCCAGTATTGCTTGATAGGGGCGAGCTTTCTGTTCGTGATACTGTATTCCTTCT
GTTGTAGTCATTTTACTTGTGCATGCAGAATTTGGAAGTTCGGTTACATACCAGCACTGT
CATAAAGTATGTTTAATAGTAAGCATTTAATTTTAATCTTAGCCGGTACGACTACGAAAC
CTTTCTAAGCTTAAAAAAATAAAATATAAACTTCAAGAGATTTCTTAGGTCACGTTCCTC
TTTGAATGTCTATGACTACAACTTTACTACGTACACCAAGCCTCAAAAAGTAAAGTAGGG
GAAGTACCTTATAGAGATAACACAATAATTT
(5131 bp)

- SilkBase 1999-2023 -