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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoEE_comp70239_c0_seq5
Scaffold_idBomo_Chr23
NCBI non-redundant
(nr)		PREDICTED:_dicer-2_isoform_X1_[Bombyx_mori]
Ontology
GO:0000166 F nucleotide binding
GO:0003677 F DNA binding
GO:0003723 F RNA binding
GO:0004386 F helicase activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0004525 F ribonuclease III activity
GO:0004530 F deoxyribonuclease I activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006309 P apoptotic DNA fragmentation
GO:0006396 P RNA processing
GO:0016442 C RISC complex
GO:0016787 F hydrolase activity
GO:0016891 F endoribonuclease activity, producing 5'-phosphomonoesters
GO:0021591 P ventricular system development
GO:0030422 P production of siRNA involved in RNA interference
GO:0030423 P targeting of mRNA for destruction involved in RNA interference
GO:0031047 P gene silencing by RNA
GO:0031054 P pre-miRNA processing
GO:0035195 P gene silencing by miRNA
GO:0035196 P production of miRNAs involved in gene silencing by miRNA
GO:0035279 P miRNA-mediated gene silencing by mRNA destabilization
GO:0046872 F metal ion binding
GO:0050767 P regulation of neurogenesis
GO:0070578 C RISC-loading complex
GO:0070883 F pre-miRNA binding
GO:0090502 P RNA phosphodiester bond hydrolysis, endonucleolytic
Transcript
Level		FPKM:0.24 TPM:0.42
ORF EntryO_BomoEE21729_complete:A_BomoEE_comp70239_c0_seq5
Sequence
(Nucleotide)
GTTTGAGCCCCGTGAGCTCACTACTACTTAAGGTTACGCTGAAACCTCTCAAGGTTTTTC
TCAAGTTTATTTTTACTGAGTAAGCAAATTATCTTAAACGCGTCGTTTTCAAATAAAATA
ATTATTTCGTAATATAAAATTTAAAACAGCTCACCCGTTATTAAATCCCAAAATGGCTTT
TTGGGATGATTTTTTTAAATAATGTTCTTCCCTTGTACTTTTAAAAGGATTGATACTGAA
GCCGACAACAAAATCATGTTTCAAAAATTCAAACTCGTCCGGTCTAGCTTTTTTCAAGTC
CATTAAGATATTATACAGAATCTTTGAAGTAAACCTTTGTTTCGTGAAAATTATTCCACA
GAGAGGTTTTCTTGAGTGGTTTACTTTCAACAATTCTGATAAATAATGAAAATTGGATAA
TTAAATGTCAAGCTTTGTTTACTGCATAGTGTGATTACTGCCATTCATACTATATTTACA
AAGCAATTGAGGCTTCGGCCTAGATCCTTAAGGTCGGTGGAGGCATTATCTATGTAATGT
CTATGGGCTTTAGTAACCAATCAGCACCGGATTCAGGAGCAATAAAAAATTAATTGATTA
TTTTGAATTAAATTCTTAGTGTCATGAACGTTTTGTATATTGTTGATTATAATTATGGAT
AAGTGAATACTTTAGATTACCACGTTCGGTTTTTAATGACACAATAAGATCTGTCCAAGC
ATTAAGATCCCTAGAGTCAAAGAAGTGCGTGGGGAAACAAGTTCTAATGTCAACTGCGCG
TTTATAGAGTTTTCTGTTAACTAATTCTCAGTGATAGTAACACAATCTTACAGCTCTGTC
AAACTCACCTCCAGGCTTTTCCAATATCAAAGGGTTATATTCCTTCAGCAAGTCAATCAA
TTGTAAAATCTTTTCCGATGAATGTTTTATTATTTTATCGTACCCAGTCTCGTTTTCCAT
GGCGTCCAAGAGTATCATGCGAGCTTCTGTGGAATGGGTGATGACAGTTGAATACAACAA
ATTTTCCTCTTTTGTTGATGCTTTACGTTTTAATCTTTCTAACAAGACAATGTACGCCAG
AATACCCAAAGATCCACCATACAAACCCATCTCTTCGAGATTTGTTATCATTCCTACTAT
AAGATTTTTTACCGCCTTCACAATCTTGTTAGGGTCGTTCGAAATATCTCGTTGGCATGG
TGTCTTTTTAAAATCTTTTGATGGCAGAGAGACAGGCAACTTAACACTCATCACAAGATT
TTGTAGCGTATTAAGTAAACTTATCGCTTCCTTAGCTGCTTCCGACATTTGAGGCTTCCT
GAAGTACTGTATAAACTCCTGGGGGTTGGTAGAGTAAGTCATAACTTCACCAAGATCATC
AACAGTTGCGATGGTTGCATGAAACGTGTTTTCCAACTGCTTAAGTGTTTCCTCGATCTT
AGATATTGATACATTCCCATTCAATAATGTCGCCGTTAAACCTAGAACTCTGGGCTGTTC
GTGAGCTTTACAATTCAAAAAGTGCTTCATTATAACTCTCATTGGATGGTCTTCCACAGC
ATGATGACATTCATCAAATATAATCAGATTAATATCCTCGATTCTTATATATGCATGTGT
AAGCATGTCACTTAATATCTGAGAGGTCATTACAATTACCTGGTTTCGTGCCAATTCAGA
GTCCCAATCGGCTTTCTTCCAATAGTCTACCCCATCTTCGCTACTATAGGCACCAACACC
GTCGACGGGACACATCATTTCAATTACATTTTTCTGTTGATTTACTAACGGAACTGTGTT
TACAAGAAAGAAACTGCGTTTCCCACCTTCTCCCCAAGGCTTTTTTAATTGGTTACGGAA
CTTTTTTATAAGCCTCTGAGCAATAAAAGTTTTTCCAGAACCAGTAGGCAAATGAATTAT
TGTATTTTTTGAACTTGCTATTTCTTCCAGTATTGCTTGATAGGGGCGAGCTTTCTGTTC
GTGATACTGTATTCCTTCTGTTGTAGTCATTTTACTTGTGCATGCAGAATTTGGAAGTTC
GGTTACATACCAGCACTGTCATAAAGTATGTTTAATAGTAAGCATTTAATTTTAATCTTA
GCCGGTACGACTACGAAACCTTTCTAAGCTTAAAAAAATAAAATATAAACTTCAAGAGAT
TTCTTAGGTCACGTTCCTCTTTGAATGTCTATGACTACAACTTTACTACGTACACCAAGC
CTCAAAAAGTAAAGTAGGGGAAGTACCTTATAGAGATAACACAATAATTT
(2270 bp)

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