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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoEE_comp70239_c0_seq3
Scaffold_idBomo_Chr23
NCBI non-redundant
(nr)		PREDICTED:_dicer-2_isoform_X1_[Bombyx_mori]
Ontology
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000166 F nucleotide binding
GO:0000212 P meiotic spindle organization
GO:0001525 P angiogenesis
GO:0001932 P regulation of protein phosphorylation
GO:0001942 P hair follicle development
GO:0003677 F DNA binding
GO:0003723 F RNA binding
GO:0003725 F double-stranded RNA binding
GO:0004386 F helicase activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0004521 F endoribonuclease activity
GO:0004525 F ribonuclease III activity
GO:0004530 F deoxyribonuclease I activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006309 P apoptotic DNA fragmentation
GO:0006396 P RNA processing
GO:0008283 P cell population proliferation
GO:0008593 P regulation of Notch signaling pathway
GO:0009791 P post-embryonic development
GO:0010070 P zygote asymmetric cell division
GO:0010468 P regulation of gene expression
GO:0010626 P negative regulation of Schwann cell proliferation
GO:0010628 P positive regulation of gene expression
GO:0010660 P regulation of muscle cell apoptotic process
GO:0014040 P positive regulation of Schwann cell differentiation
GO:0014835 P myoblast differentiation involved in skeletal muscle regeneration
GO:0016075 P rRNA catabolic process
GO:0016442 C RISC complex
GO:0016787 F hydrolase activity
GO:0016891 F endoribonuclease activity, producing 5'-phosphomonoesters
GO:0019827 P stem cell population maintenance
GO:0019904 F protein domain specific binding
GO:0021522 P spinal cord motor neuron differentiation
GO:0021675 P nerve development
GO:0021889 P olfactory bulb interneuron differentiation
GO:0021987 P cerebral cortex development
GO:0030324 P lung development
GO:0030326 P embryonic limb morphogenesis
GO:0030422 P production of siRNA involved in RNA interference
GO:0030423 P targeting of mRNA for destruction involved in RNA interference
GO:0031047 P gene silencing by RNA
GO:0031054 P pre-miRNA processing
GO:0031069 P hair follicle morphogenesis
GO:0031641 P regulation of myelination
GO:0031643 P positive regulation of myelination
GO:0032290 P peripheral nervous system myelin formation
GO:0033168 P obsolete conversion of ds siRNA to ss siRNA involved in RNA interference
GO:0035068 C RISC complex
GO:0035087 P siRNA loading onto RISC involved in RNA interference
GO:0035116 P embryonic hindlimb morphogenesis
GO:0035196 P production of miRNAs involved in gene silencing by miRNA
GO:0035197 F siRNA binding
GO:0035198 F miRNA binding
GO:0035264 P multicellular organism growth
GO:0035280 P miRNA loading onto RISC involved in gene silencing by miRNA
GO:0036404 P obsolete conversion of ds siRNA to ss siRNA
GO:0042487 P regulation of odontogenesis of dentin-containing tooth
GO:0045069 P regulation of viral genome replication
GO:0045595 P regulation of cell differentiation
GO:0045664 P regulation of neuron differentiation
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046872 F metal ion binding
GO:0048255 P mRNA stabilization
GO:0048536 P spleen development
GO:0048565 P digestive tract development
GO:0048608 P reproductive structure development
GO:0048713 P regulation of oligodendrocyte differentiation
GO:0048730 P epidermis morphogenesis
GO:0048754 P branching morphogenesis of an epithelial tube
GO:0048812 P neuron projection morphogenesis
GO:0048856 P anatomical structure development
GO:0050767 P regulation of neurogenesis
GO:0051216 P cartilage development
GO:0051225 P spindle assembly
GO:0051252 P regulation of RNA metabolic process
GO:0051607 P defense response to virus
GO:0051726 P regulation of cell cycle
GO:0055013 P cardiac muscle cell development
GO:0060119 P inner ear receptor cell development
GO:0060253 P negative regulation of glial cell proliferation
GO:0060576 P intestinal epithelial cell development
GO:0061309 P cardiac neural crest cell development involved in outflow tract morphogenesis
GO:0061548 P ganglion development
GO:0070173 P regulation of enamel mineralization
GO:0070578 C RISC-loading complex
GO:0070883 F pre-miRNA binding
GO:0071335 P hair follicle cell proliferation
GO:0090502 P RNA phosphodiester bond hydrolysis, endonucleolytic
GO:2000628 P regulation of miRNA metabolic process
GO:2000630 P positive regulation of miRNA metabolic process
Transcript
Level		FPKM:0.22 TPM:0.38
ORF EntryO_BomoEE21724_complete:A_BomoEE_comp70239_c0_seq3
Sequence
(Nucleotide)
AGTGTTCATTGGAGGCATCGAATATATTATAACATGTCTATTTCTTATATGTCTATGTGA
ATAACGTTCCGTTGGAAATTAAGAGTCTAATATTTTGAGAGCTAATTTCGCGGCGGCCCT
CTTCGCTTGCGATTTGTTGACGCCGACTCCGTAGGCGGCGAGACGCTGGTCGTTCTTCGT
GAACGAAACCGGCACCATTACCTTCGGGATGTCCGGATTGACGACTATTTGTTTTTCGAA
AACCGGACAAGCGTGTATCATTTCGTATAGAATTTTGACGGGCTGCTTCGGTATGCGTTT
CGAGAACGAATCGATCTCGACGTGCATTATCTTGTACAGAACCGACCACACCGTCTCCAG
ATTCCCGCCCGAGTCCAAGTACACGGCGCCGACTAATGCTTCGAAAATGTCGCTCAACAC
CTTCGGCACATCAACATATTCAGCGACTTGACAATCGACTTCGCTGATAAGTAACAGAAC
GTCGAACTCAATCTCGTGATTTCTTTCTATTTGATGTTCGACGAATTTCATTATCGCCTT
CTCCAACGAAGGGTTCAGCTCCGAGCAGAGGTACTTGTGCAATCCAAGTTTGACGGTGTA
GGCCGCGAACGTGACGTTATTGACGAGGGCGGATCTCAGGTCAGTCATTTCGCCGGGCTT
CAGTTCGCGACAGTTCTCGAAGATGTGTGACGTCACCAGGAAATCGATTATGGCGTCCCC
GAGGAACTCGAGGCGCTCGTACGAGCTCGTCAGCCTGTTCCGGATGTACGACGAGTGAGA
CAGAGCGTTTAGCAGGAAGGTTGAATCTTTGAACGTGTAGTTTAGGATCTTTTCGACATC
AGTTCTCGAATTGTTTAGTAAAAAGTCAATATCAGCTTCGGTAGCTAAATTCTTCGATAA
CGGTGTTTGCACCGGCTTGTGGAGCATGTCTGCAAAGTTATCCTGTGGCGGAAACACCTC
CATCCATTCAAGTAGTTTTACAGCTGCTAATATCCCTCCACTAAGTAGATATGTGCCGAT
CAGAGCTTCCACGGAATCGGCTATAGATTTGTCCGCAACTGCTTGTGAATGTACATAGCA
TTGCATAGAATTTTGGGCACAGCCTTCGGGTTCTGCCTCAGCGATGCCATTTTGGAAATT
ATTCATCACAGATTCCCAGCTTTCTTCACTTAATTCACCGGTCATTACTTCCTCTTCGGT
GAACTGTATGCCGATTAAGAATGTTGGACGAATTTGTCTTTGTTCAATAAATTCTTCCAA
TTTAGGGGGCGCAAAGAAACCTGGGACGAGGAAGTCACTTCTAGGGCTGAACTGCTCCAC
CTTCATGCGTCCACCCAAGTTGAATTTCGCACCAGCGTAATATAAATTCCTGTTACTGAT
CAGCTTGCCCTTGATGTTCGTTAGTTGACCCTCGTTCATGTTCGGAAACTTGTGGTGCAG
GTACAGGCTGGCGGCGAACTTCAAGAACGAGTCCCCCAGTGTCTCCGGTCGCTCCAGATC
GAAGGTGTCGTTTGAGTTGATCGTGGTGAGCGCGGCGAGCACGTCTCTCAGTTCCGGACC
TCGCCCGGTCGGCGTCTTCTTTAATATTTCGATTTTATCAACGTACTTGATGGGCGGCGG
TGCTATAGCTGGGGCCTTAGGAACGATTCTCGGCGGGGAACAAGGGTTGTTCGATGCAGA
CGATATCGGAGCCGACACAAACTCGTCGTAACATTCTATGTCCATTAACGTGATGGTCGA
CAAGTTACGCTCTACGTCGATGGGTTCGATTCGTTGATCCCAGGGGTACTCTTTGTCGAT
TTTCTTTCTTTGCAGTTTATATAAGCTCTTTTTTAACGGTACAACTTTCTTCAAACAATC
ATCTGTGCCTTTGTGTATTCTGTCAATAGTGTGGACATGAAGTGGTTCTTCAACTTGGGA
CAATAATGAATTTATGGCTATATACCGGTCCACTTGTATCGGTTGAAATGATTCCGTTTT
TTTCAAAATTGGTTGCCCGTATTTAGTGGCGTTTGATATTTCCACGAGCAATTCATGTGC
CACTAACAACATGTGAACTCTGTGAATAATACTGGGCAGTAGCGTTGCCTTATACCACAG
TACTCCTGGGTAATCGTATTTAATGCAGAATTCCGGTATAAATATCTCTGCAAATCCCTT
CGGTTTATCGTCGCCGAACGCAATCGATATCATCTTCAGCTGCTTGTCTGTGAACGCTTT
GAGCGTTGCTGCTCGGGGTAGGAGGCAGTTCATCCGCGTGCTTATGTTACGTACCTCCAA
CAGTGGTTGACTTTCACTTCCTAATATATCCAAGTTATAGTTGTTTGCATAATAATTTGC
ATACGATTCATAGCAGTCAGCATCGAATTGAGATTTCGGCGTCATGTATTCGAGAACCTT
CGTCACGACGTACCGTTCAGGTAGAATAGTCCCGCGATACCAGGGCGTTACAATGCAATT
CGTGTAGTTTTCTTCTGTGACTACCAGCGATTTTCTTTCCTCAACTGAAGGCGCGGCGAC
CGGTGGCACCGTGTGGTGAGTCTGCATTGTTGCCCAGTCAATGTTGTATCCATTATGTTC
CAGTACCGGGACAACGTACATGCAGTTTTTAGTTCCCTCGAATATCAGAAACTTCTTATT
GATCGCCAAGATTTGGTCGAATAGAAAATAATGGAATTGCTTCACTAGCTCGAATATAAT
CGGGGTCAGTTTTATAACTGCGTAATTGACTTCTATTGACGTGGTGATTTCTCCAACGGA
CGTGAACGCTGGGAACTCGCACAGTTTAGGCAAAGGCTTCTGCGTCAAAAACCCGTAGCA
TTCGTTTCTCTTTATAAAATCGTACAAAGCCTTTTCACGATTATCGTTGGGTTTCTCGAA
TGCCGCCTCCATTTTTATTACGTGAAGATAGAATACCGAACTATCTGGTACTGCGTCTAG
GTGTGACGGGAACTGTATTTTATGCTTTCGTTTTCGTTTCTTGGAACCAGGCTTGGGTAC
ATTCTCTTTGATCTCGGTCTCGCAATCTTTAGTCCAGTTCGGAAAGCAGCCACGTATGTC
ATCTCGTTCGTAATCAACTTCCGCGTATTTGTACGGGAGTAATGTTAACGGATGAAGTTC
GCCCAATTCATGTAGCTTAATGCACGCCTTCAGTGCAGCGGAGCGTTTAGCGGTTTTCGT
ATTTGAGTACGGGTCACCCTTAATTTCTTCTTTGACGGGGGATCCTATGGGAAGTATGAC
GGTGACCTGTTTTTTAGCTCCGTTTTCAACCACCTCTTGCAACCAAACCGGAGTGATCGT
TGTGAATTGATCGTGTGGTAAAATCGAGCAATACCGGCTTAGTAAACTAATTGCTGATAC
GGAATATAATATATTGCCATTAGACGTTTCGTATGGGGGAACCTCGTCGTCATCATACAA
GTTCTCATGAATGTCTTGAGTTGTGGGAGCGGCGCGGCTGTCATCGCCGACTATGAGATT
ACGAATACGTTCTTCGGTTTTTTGGAACGCGTCGTATTTTATTAAGAACGACTGTTTGTC
TTCAATATCAACGAGTATAACGAAACTGGCTTCAGAACTTCTTGCACGACCTTTGCTTTG
GATATAAGATCGATATTCGGTTGGCGCATCGTATCGGACAACTAACGCACACTGAGGTAT
GTCCAAGCCTTCTTCGATGACGCTCGTCGATATCAAACAGTTCAGGTCTCCGTTATTAAA
TCCCAAAATGGCTTTTTGGGATGATTTTTTTAAATAATGTTCTTCCCTTGTACTTTTAAA
AGGATTGATACTGAAGCCGACAACAAAATCATGTTTCAAAAATTCAAACTCGTCCGGTCT
AGCTTTTTTCAAGTCCATTAAGATATTATACAGAATCTTTGAAGTAAACCTTTGTTTCGT
GAAAATTATTCCACAGAGAGGTTTTCTTGAGTGGTTTACTTTCAACAATTCTCCAGGCTT
TTCCAATATCAAAGGGTTATATTCCTTCAGCAAGTCAATCAATTGTAAAATCTTTTCCGA
TGAATGTTTTATTATTTTATCGTACCCAGTCTCGTTTTCCATGGCGTCCAAGAGTATCAT
GCGAGCTTCTGTGGAATGGGTGATGACAGTTGAATACAACAAATTTTCCTCTTTTGTTGA
TGCTTTACGTTTTAATCTTTCTAACAAGACAATGTACGCCAGAATACCCAAAGATCCACC
ATACAAACCCATCTCTTCGAGATTTGTTATCATTCCTACTATAAGATTTTTTACCGCCTT
CACAATCTTGTTAGGGTCGTTCGAAATATCTCGTTGGCATGGTGTCTTTTTAAAATCTTT
TGATGGCAGAGAGACAGGCAACTTAACACTCATCACAAGATTTTGTAGCGTATTAAGTAA
ACTTATCGCTTCCTTAGCTGCTTCCGACATTTGAGGCTTCCTGAAGTACTGTATAAACTC
GTCATAACTTCACCAAGATCATCAACAGTTGCGATGGTTGCATGAAACGTGTTTTCCAAC
TGCTTAAGTGTTTCCTCGATCTTAGATATTGATACATTCCCATTCAATAATGTCGCCGTT
AAACCTAGAACTCTGGGCTGTTCGTGAGCTTTACAATTCAAAAAGTGCTTCATTATAACT
CTCATTGGATGGTCTTCCACAGCATGATGACATTCATCAAATATAATCAGATTAATATCC
TCGATTCTTATATATGCATGTGTAAGCATGTCACTTAATATCTGAGAGGTCATTACAATT
ACCTGGTTTCGTGCCAATTCAGAGTCCCAATCGGCTTTCTTCCAATAGTCTACCCCATCT
TCGCTACTATAGGCACCAACACCGTCGACGGGACACATCATTTCAATTACATTTTTCTGT
TGATTTACTAACGGAACTGTGTTTACAAGAAAGAAACTGCGTTTCCCACCTTCTCCCCAA
GGCTTTTTTAATTGGTTACGGAACTTTTTTATAAGCCTCTGAGCAATAAAAGTTTTTCCA
GAACCAGTAGGCAAATGAATTATTGTATTTTTTGAACTTGCTATTTCTTCCAGTATTGCT
TGATAGGGGCGAGCTTTCTGTTCGTGATACTGTATTCCTTCTGTTGTAGTCATTTTACTT
GTGCATGCAGAATTTGGAAGTTCGGTTACATACCAGCACTGTCATAAAGTATGTTTAATA
GTAAGCATTTAATTTTAATCTTAGCCGGTACGACTACGAAACCTTTCTAAGCTTAAAAAA
ATAAAATATAAACTTCAAGAGATTTCTTAGGTCACGTTCCTCTTTGAATGTCTATGACTA
CAACTTTACTACGTACACCAAGCCTCAAAAAGTAAAGTAGGGGAAGTACCTTATAGAGAT
AACACAATAATTT
(5353 bp)

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