SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoEE_comp70037_c0_seq1
Scaffold_idBomo_Chr19
NCBI non-redundant
(nr)		polyadenylate_binding_protein_2_[Bombyx_mori]
Ontology
GO:0000166 F nucleotide binding
GO:0000289 P nuclear-transcribed mRNA poly(A) tail shortening
GO:0000398 P mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006378 P mRNA polyadenylation
GO:0006397 P mRNA processing
GO:0008143 F poly(A) binding
GO:0022008 P neurogenesis
GO:0071011 C precatalytic spliceosome
GO:0071013 C catalytic step 2 spliceosome
Transcript
Level		FPKM:66.16 TPM:115.39
ORF EntryO_BomoEE20605_complete:A_BomoEE_comp70037_c0_seq1
Sequence
(Nucleotide)
ATTTTCTAGAAAGCTGGCCGTATGTGCTATGTTTTCGTTGTCAATCTAATAAACGAATCA
AGCAAACAATGATATTTGACATACGGTCTAATGACATTTCATGCAAATTGTTTAATGTTT
GGATCTAACCGAATAGCTATACATTAGCATTTTAGAATGAATCCGTAAATATCTTGCATC
AAATTGTTATTTTATGTAATTCGAATACTGACTGTAATTTGAAAACTGTCCTATTTGTTG
TTATGAACTGTATTACCTGAGTAGGTCAACGATTTCATAGTGGATTTGGTTACCGTTTCA
GAGAAGTAAAGTGATCTCGAAATATATAATTCATGATTTCGACGCTCGGTGGAAATGGCA
GAAAATGATGATTTTTTAGACTCGATTGACAACAATCATTTGGAAGGAACTAACGGCTCA
ATGAATATGACTGACAATAGTCTCGGAGGCGGAGATGAAGCGGCCGGCGGAGAAGCTCCT
GACCTTGCAGCTATCAAGGCCCGAGTGCGGGAGATGGAAGAAGAAGCTGAGAAACTGAAA
CAAATGCAGACTGAAGTTGACAAGCAAATGAGTATGGGAAGCCCACCAGGACTAACCAGT
CCATTAAACATGTCTATCGAAGAAAAAATAGAAGCAGACAATAGATCAGTATATGTTGGT
AATGTTGATTATGGAGCCACGGCTGAGGAGCTGGAGCAGCACTTTCATGGTTGTGGATCT
ATTAACAGGGTTACAATATTATGCAATAAGTATGATGGCCACCCAAAAGGTTTTGCCTAC
ATCGAATTTGGCGACAAGGATAGTGTCCAGACTGCAATGGCTATGGATGAATCATTATTT
AGAGGAAGGCAAATAAAGGTGATGCCGAAGCGTACGAACAAGCCGGGTCTGTCGTCTACG
AACCGCCCGCCGCGCACGATGCGCGGGCGCGGGCGCGGCTACCGCGGCGGCCTCGCGCCT
TACTACACGGGCTTCCGGCCCCCGCGACGCGGCAGGTACGTTCCCTACTGAACAACGCGC
GCGCGACCGCACACCCCCCCGCACACGCACACCGCGCCCCTCTTGCAACAGACGTCATCT
TGAGGTACGCGTCCATTGACCAGCGCCAGACGCACCGCACGCAACGGATTTTATTTTGTA
GTCTTGGCTCATAAATGCCGGCGTTCAGGGGTCGGCAATCTGTTTGTCCTCAAGGGCGCA
ATACTAAATTTGAAAATCACCGAGGGCGCACATTTTACAGATAATCAATAGGTATAAATA
GGCATTAAAAAAAATAGATTTTGTCAACCCGTGATCTATTCGAAATACGATCACACACTA
ACAAAAAATACGTGCGTGTTATTAGATACGCTCAAGGTTAGCACACTCCTAAACTCAACT
GAATACTTGCTGTATATCGCCGTTTGACAAGAGTAAGTAAATCACTCTGGCTATCATACA
TTTATATTAGTCCAGCGAGGGCGCATTAAAATCGATCGGGGGCGCCGCGTTGCCGACCCC
CCCCCGCGTTCGATGCGGGCGGCGCGGATAGTGGACGCAGCAAAGCAAAATAAAATCCGT
TGCGTGCAGTGCGTCTGCCGTAGGCCAATGGAAGCGCGTACCTTTGGTTCTCACTGTGTT
AAACATATCGTTCAGCGTTCGAGACCTTGGTGGATTCGAGGTGTCATGTAAACGTACTAA
TTTTTAACTAAAGAGAAAAAAAATGTTACTATATTATAATGTCAAGTTTGGTGATGTACA
TAAATATATATGTATGAAATGAAAATGAAATGAAAATGTCCGTTTGATTGGGATTCTGTT
GCAAGTTGCAAAGTGGTGAAATCGCTGCTACAAACAGAAACGTTAAATTGTATTGTAATT
TTTTTCTTCTGAGAAGCTTACCAACTGAATTGTATTTTTTTTTTTTTTATTCCCGACA
(1918 bp)

- SilkBase 1999-2023 -