SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoEE_comp70026_c1_seq6
Scaffold_idBomo_Chr1
NCBI non-redundant
(nr)		PREDICTED:_roquin-1_isoform_X4_[Bombyx_mori]
Ontology
GO:0000288 P nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
GO:0000932 C P-body
GO:0003723 F RNA binding
GO:0003730 F mRNA 3'-UTR binding
GO:0005737 C cytoplasm
GO:0008270 F zinc ion binding
GO:0010494 C cytoplasmic stress granule
GO:0010608 P posttranscriptional regulation of gene expression
GO:0035613 F RNA stem-loop binding
GO:0042129 P regulation of T cell proliferation
GO:0046872 F metal ion binding
GO:0050863 P regulation of T cell activation
GO:0061014 P positive regulation of mRNA catabolic process
GO:0061158 P 3'-UTR-mediated mRNA destabilization
GO:0071347 P cellular response to interleukin-1
Transcript
Level		FPKM:0.23 TPM:0.41
ORF EntryO_BomoEE20537_complete:A_BomoEE_comp70026_c1_seq6
Sequence
(Nucleotide)
GTTCTTTAGTCTATGTCTTGAGGTTGCTGACGGATCATGTTTTGAAGTGGATAGAAGTAT
AAAGTGTTATTTTTGTGATGAGTGTACGTGTTATTTATAAGAATGCCAATTCAGGCGCCT
CAGTGGACGGACTACCTAACCTGTCCGGTGTGCTGCCGAGAGTTCGGTGCTCCGCCCCGG
AGTCCTATCAGCCTCAGCTGCGGCCACACCCTCTGTAGGCACTGTCTGATTCACCTTCAT
CGGAAACAATGCCCCTTCGACCAGACGATCATACAAGTTGAACCCGAGGAGTTGGTTGTG
AACACGGCGCTGCTTCAGCTGGCGGGCTATGCGCCACCTTCGCAGCCGTATCAGCCGCCT
TGTATCAAGGCTCTCCCGGAGTCGGACAGGCAGGCGTACGACACTGTTATACGCACCATG
GAGGAACTTGCTGTATTCTTGAAATGCTCCGGAAACGCCAATATGAGTGGCAACGGGAAT
CGACTTTCGAGGCCTATGCAGAGGAAGCTGGTAACGCTGCTGCAGTGTTCGATAACAGAC
GAGGAAGGTCGGGGCAGGGCCGCACGGGCAGCCAGGTCTCTTGGTGAACGGACGGTCACT
GAACTCATACTTCAACATCAGAATCCGCAGCAGCTAAGCGCCAACTTATGGGCGGCAGTG
AGGGCGCGTGGTTGCCAATTCCTTGGTCCTGCTATGCAGGAAGAGGTGTTAAAATTGGTA
CTCCTCGCACTCGAAGACGGTTCCGCACTCTCCCGAAAGGTACTAGTGATGTTTGTGGTT
CAAAGACTGGAGCCGCATTTTCCGCAGGCCTCAAAAACAAGCATCGGGCATGTAGTGCAG
CTTCTGTACCGCGCCTCATGTTTTAAGGTATCGAAAAGGGAGTCAGATTCGTCGCTCATG
CAACTCAAGGAGGAATTCCGTACGTACGATTCATTGAGGCGCGAACACGACGCTCAGATA
GTTCAGATCGCCACCGAATCAGGTTTGAGAATCGCACCCGATCAGTGGAGTGCTTTGTTG
TATGGCGACACCGCGCATAAGAGTCACATGCAGAGCATCATAGATAAATTACAGACGCCT
CAGTCATTTGCCCAATCGGTCCAAGAGCTGTTTGTCGCGCTGCAACGTACCGGAGACCCG
GAACAACTGGTGACAATGAGCATGCATCTCGATAAACTCGCAAACATCGACGCCAACGCC
GATGCTAAAAGCCCAACATGGAAGCAAATGGCCGATGTGATGACGTCATTAAAGGAGGTT
GTGATCGGACTGATCAATTACATTCAGCAACAAGCGGCCGGAAAAGACATGAACCAAGGG
CAAAAGGATCTACGAAACGAACCATCAACTAGTCAATCATCACCGCAAGCCCGTACGACA
CCGACACCTACCCAGGGGAGGTACAAGATGGCTATGTGTAAGGATGTTCTGAGATCATTG
TGTCCGAGGGGAAATTCATGCATGTATGCACATTCTGAAGAGGAACTAGAAAGGAGATAA
CCAAATGAAATTACAAGAAGGATATTATACATATTATCATTCTATCTTGAGAGGAGTCTG
CTATTAAAATGATGCCTACGGTTCCAGTCCGCATTTACTGAAAGGATTTTGTTAGGACAA
AGCAATAGTCCGTTCTATGAGAAACAAGTGAAACATAATCACAATGGAGAGAAAGAAGAA
GAAGAAAAAATTTAAAATATTATAATTTTCTTTACAAGCAGATTCTAAATAACCAGATTA
CCCAATCAAATGACAGTTAAATTCCTGACTGCTTGTTGAAAGCGTTAATTGTGGTAAAGT
ATACTGTGAATCTGCAGAGATTCTACTATGCTTAATATCTCTGCTACAAATGTTACAGAA
CCAAATGAGACTTTAAGTCTCAAGTAATTACAATAAGCTGGCGATTGACTGTAACTTCAA
TGTAATAAAACATTTTATTATGTGTACAACTAATACAGTATTATGTCAGAACAATGAGAG
TATTATGTCAGTAGCCACCTTAAATATTCAATTGTGCCACAATATCTGTGTTTGAAACTT
TTTTAACATATTGTTTCTCAATAATACATAATTTATTTTGCTTCAAGGAGGCGCCTGATA
AATCAGATCAGACCTGTGTATCGTCCTGTATGGTGGGCATTACATTACTCGGTATCCTGG
TACCAAGTGAATTATGAATTAATTCAAATTAGACCCCATGTGTTTGTCGTTAGGTACATA
TCGTACATCAAATACATATCTTTTGTAATCTCTATGTGTTTTAGAATGGATATGAAATAA
AGTATTTAGTGTTATGACTGTCTTTTCATTGTATATCTTTTGTTTACAGTAATTAAAATT
ACCTGATTTTTACTGTAACTCTTCTATCATGTGAGCGATTTTTATTTTGAATTATAGTCC
TACAAAACACTATTTTTATTATTTTTTCGTTTTATTTTATTATTTAAGATATGTTTTAAT
TTTTGTTTATGTTAACTTAATTTTATTACTACCTTATATTTTAAGGTTTGTCGAAGTAGA
AACATTATGTTGCGTTTTCTGAAGCCACTTGTCTTATTTTATCAAGTGGAGTTCTCGATT
TCGTTTTTGATTTAATTAGCTTTTGATATGACTTAATTTCACGTAAGTGTTATTGTCGTG
CTGAATTTGTGCTTCAGTCAGTCACCTTCCACTACCAGAATGCTAACGTACCTTTCCTTT
TGCTGTCAATGTGCATGGTCGTGAAGAATTGCTAAATGTATACATATTATTAAGAATAGT
TAATGAATGTTCAACGTTGTGATGCGTTCCCGTCAGCTGAGACGCGTCTCGAAGCGGGGC
CTGCGCCCGTGGTACCTCACGCCAGATTATAAATGACACAGCGTAACACTGACTGTAGCG
CAGTTATTGTTCTGAATCTTGTTAATAGGTTTCGCAGCACCGCGAGTAAGTTCTTTCGTG
TGTTTGTACAGATATCGAGCGATGATGGCAAACATAAATGGACACTTTCAGTTCATGCCC
GGGATAGTAGGAGTGCCCGCTCTCCAGCATGGACTGACGCCGATGCAACCTGGCTTGGCA
CCGATCCTACCTGGTCAGCCAATACACATAATTCCCAACATGTATAATCAATTCGCGATG
CCACAACACGTCGACCCCTCTGCTTTCGGTGCCCAGTCCATGCAGGGAATGCCGCCTCAA
TCGATGCAGTCGCAAGGAATCCAACCACAATCAATGCAATCCCAGGGAATCCAACCGCAA
TCGATGCAACCCCAAGGAACCACACTGCAATCTATGCAATCCCAAGGAATGCAACCTCAA
TCGATGCAATCTCAGGGAATCCAGTCACAATCGATACAACCCCAAGGAGTCCAACCGCAA
TCGATGCAATCCCAGAGTATCCAACCACAATCAATGCAAGCCCAAGGAATCCAAACGCAA
TCGATGCAACCCCAGGGACTGCAATCGCAGCCACAGGGATTACGGCCCGTGCAGGCTGCC
TCTGTGGAAATGCCCGAACTGATTGACCTGCAACAAAATCCGAATTTCGTTCAACAAAAT
ATGCCGTCGGGTCCGCGTCGCATCTACGATCTTAACTCTGGCAATCCGAACTTTAACTTC
GCCCAGCAGTATCAGCACCCTGAGTATCCGACTTCGGTGTATGGGGTGCCGGAAGGATCC
AACCAAATGTACATGCCGACGGCTTCTAACCTCTACCCCTTCGAAGACGGAGCAGCGCCA
ATCCAGTCCCCGATCGACATCCGTTCTGAATTGCGATCCGACATCCGCGTGAACATCCCG
GCTCCGCAGTATCCTTCGATGCATCACGTCCCGAGGACCGAAGTGACCTGGCCAGTTGGG
CCGATGCCCCCGATATCCCAGATGTCTCAAGGACAACAAGTGCCCCCCGGCCCACAGGTG
CCTGTTACCGATGTATACGCTTTCGAAAATATCCGTGATGCTCTGCCAACTGTAGCTCGC
AGCTCGGCCCCTCTAGACAGGCGTTTCCCATCCGATAGACGCGTCGTAGGATCCGAGCGT
GGAGTACCTCCACCTCACCCGTCCTTTTTCGCGGACGGCGCCGAAGATCAACTCGAAGAG
GAGCTACTCGCTCTAGAGCGTCGCATAGACACCGAATTCAAAAGCGCTGATTAGACTCCG
GCGCCGGAATACGTTCAATGTCTGTCTCTGTGCATTACTTTTGCGTTTTGTTCACGGCTT
TGTACTTCTTGGATAGATAATCGAAACAAAATCACTATTAACGAAAACAATACATTTCAT
CAAAGCTTCATGTTATTTAATACCCTATCGATCAATCGAGAAATTATATTAATTAAATGT
ATAAAAGATATAACTGTCAAAAGTTTTTTAATAAAAAATATGATAATAATGAGATCGTCC
ATTGGGCACGCCTGGTCGTGGTTTTATGCTAATGAATTTTAAACGGGTCGTATTTTATGT
AATTTAGTGTTTTATTCTATTAAATTTTATTTTGTTTGTATTATAGTAATGACGTCCCAT
TGTATTATACATTCAGAAACGCGCAGTATTATTAAATACATATGTATATGGTCACAGGGA
ACTACTTAGCCGTGAACAATTTATTTATTTATAATTTTATTTTCTTGCCGAATGATTTAA
GTACTTAATTTTTTTAAACTGAATGACAATCAAATTATTATTGGCATGTTGATTTAGATT
TTATTTCTTCATTTATTTGTATTAATACCATCACTTGCTTATAATTACGGAGTAAAGATA
TACGCATCTTATAAAATTGACATGTAAAATTAACACTCTTTTGGTGGGCTCAC
(4793 bp)

- SilkBase 1999-2023 -