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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoEE_comp70026_c1_seq11
Scaffold_idBomo_Chr1
NCBI non-redundant
(nr)		PREDICTED:_roquin-1_isoform_X4_[Bombyx_mori]
Ontology
GO:0000288 P nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
GO:0000932 C P-body
GO:0003723 F RNA binding
GO:0003730 F mRNA 3'-UTR binding
GO:0005737 C cytoplasm
GO:0008270 F zinc ion binding
GO:0010494 C cytoplasmic stress granule
GO:0010608 P posttranscriptional regulation of gene expression
GO:0035613 F RNA stem-loop binding
GO:0042129 P regulation of T cell proliferation
GO:0046872 F metal ion binding
GO:0050863 P regulation of T cell activation
GO:0061014 P positive regulation of mRNA catabolic process
GO:0061158 P 3'-UTR-mediated mRNA destabilization
GO:0071347 P cellular response to interleukin-1
Transcript
Level		FPKM:0.71 TPM:1.25
ORF EntryO_BomoEE20556_complete:A_BomoEE_comp70026_c1_seq11
Sequence
(Nucleotide)
GTTCTTTAGTCTATGTCTTGAGGTTGCTGACGGATCATGTTTTGAAGTGGATAGAAGTAT
AAAGTGTTATTTTTGTGATGAGTGTACGTGTTATTTATAAGAATGCCAATTCAGGCGCCT
CAGTGGACGGACTACCTAACCTGTCCGGTGTGCTGCCGAGAGTTCGGTGCTCCGCCCCGG
AGTCCTATCAGCCTCAGCTGCGGCCACACCCTCTGTAGGCACTGTCTGATTCACCTTCAT
CGGAAACAATGCCCCTTCGACCAGACGATCATACAAGTTGAACCCGAGGAGTTGGTTGTG
AACACGGCGCTGCTTCAGCTGGCGGGCTATGCGCCACCTTCGCAGCCGTATCAGCCGCCT
TGTATCAAGGCTCTCCCGGAGTCGGACAGGCAGGCGTACGACACTGTTATACGCACCATG
GAGGAACTTGCTGTATTCTTGAAATGCTCCGGAAACGCCAATATGAGTGGCAACGGGAAT
CGACTTTCGAGGCCTATGCAGAGGAAGCTGGTAACGCTGCTGCAGTGTTCGATAACAGAC
GAGGAAGGTCGGGGCAGGGCCGCACGGGCAGCCAGGTCTCTTGGTGAACGGACGGTCACT
GAACTCATACTTCAACATCAGAATCCGCAGCAGCTAAGCGCCAACTTATGGGCGGCAGTG
AGGGCGCGTGGTTGCCAATTCCTTGGTCCTGCTATGCAGGAAGAGGTGTTAAAATTGGTA
CTCCTCGCACTCGAAGACGGTTCCGCACTCTCCCGAAAGGTACTAGTGATGTTTGTGGTT
CAAAGACTGGAGCCGCATTTTCCGCAGGCCTCAAAAACAAGCATCGGGCATGTAGTGCAG
CTTCTGTACCGCGCCTCATGTTTTAAGGTATCGAAAAGGGAGTCAGATTCGTCGCTCATG
CAACTCAAGGAGGAATTCCGTACGTACGATTCATTGAGGCGCGAACACGACGCTCAGATA
GTTCAGATCGCCACCGAATCAGGTTTGAGAATCGCACCCGATCAGTGGAGTGCTTTGTTG
TATGGCGACACCGCGCATAAGAGTCACATGCAGAGCATCATAGATAAATTACAGACGCCT
CAGTCATTTGCCCAATCGGTCCAAGAGCTGTTTGTCGCGCTGCAACGTACCGGAGACCCG
GAACAACTGGTGACAATGAGCATGCATCTCGATAAACTCGCAAACATCGACGCCAACGCC
GATGCTAAAAGCCCAACATGGAAGCAAATGGCCGATGTGATGACGTCATTAAAGGAGGTT
GTGATCGGACTGATCAATTACATTCAGCAACAAGCGGCCGGAAAAGACATGAACCAAGGG
CAAAAGGATCTACGAAACGAACCATCAACTAGTCAATCATCACCGCAAGCCCGTACGACA
CCGACACCTACCCAGGGGAGGTACAAGATGGCTATGTGTAAGGATGTTCTGAGATCATTG
TGTCCGAGGGGAAATTCATGCATGTATGCACATTCTGAAGAGGAACTAGAAAGGTATAGA
CGTTTAACAGGATTGACATGGTCACAACAAATATATGCATTGGCGGTAGTTTAAACTTTT
AATGTGCTATTTCATTGTTTGAGAGTGGAACAAATAGATATTTTTTATAATATCATTTAA
CATAGTTTTGATATGTTTCTGATTGACTGATATAAAAAAAACCGTTAATGCATGTAATTA
AATGTACAATCATTCACATACTAATGCAGTTTTGTTTCAAGGAAGCTATACACTTAAAGC
CAACTTAATTAGAGATTATAATAATAAGAGTAATATTAATTCAAAGAAATGTGATGAGAC
AAAAGAAAAATAGTATTTTGATTAAAACTTATAAATTACTATGAACTATCACCTAATTTT
GTTGGTCAATTCCTTGAAGATTAAGTGTCTTGTATAATGAATGACAATGGCATCTGAGTT
AATTTATTAACATGCTAGCTTAATTTAATTATCTGATGTGTTTGTAAATACTTGACCTAG
AAGTAATGAAAATATTGTATTTCCTTTTGAAAAAATCATTTTCAGTAAAATTTCTTTTAT
GATCTTATATAAAAAGGTTCTATGAAAATTTAATATTTATGTTACTGTGACATAATAACC
AAAGGCACTTCCATGCCATGCTTGTGAAGTTCTTAAGAGGAGTTATTTGTGTGCCTATTT
TATTATAAGCAAATGGCTAATTATTATAACTAATTTAAAGGAGATAACCAAATGAAATTA
CAAGAAGGATATTATACATATTATCATTCTATCTTGAGAGGAGTCTGCTATTAAAATGAT
GCCTACGGTTCCAGTCCGCATTTACTGAAAGGATTTTGTTAGGACAAAGCAATAGTCCGT
TCTATGAGAAACAAGTGAAACATAATCACAATGGAGAGAAAGAAGAAGAAGAAAAAATTT
AAAATATTATAATTTTCTTTACAAGCAGATTCTAAATAACCAGATTACCCAATCAAATGA
CAGTTAAATTCCTGACTGCTTGTTGAAAGCGTTAATTGTGGTAAAGTATACTGTGAATCT
GCAGAGATTCTACTATGCTTAATATCTCTGCTACAAATGTTACAGAACCAAATGAGACTT
TAAGTCTCAAGTAATTACAATAAGCTGGCGATTGACTGTAACTTCAATGTAATAAAACAT
TTTATTATGTGTACAACTAATACAGTATTATGTCAGAACAATGAGAGTATTATGTCAGTA
GCCACCTTAAATATTCAATTGTGCCACAATATCTGTGTTTGAAACTTTTTTAACATATTG
TTTCTCAATAATACATAATTTATTTTGCTTCAAGGAGGCGCCTGATAAATCAGATCAGAC
CTGTGTATCGTCCTGTATGGTGGGCATTACATTACTCGGTATCCTGGTACCAAGTGAATT
ATGAATTAATTCAAATTAGACCCCATGTGTTTGTCGTTAGGTACATATCGTACATCAAAT
ACATATCTTTTGTAATCTCTATGTGTTTTAGAATGGATATGAAATAAAGTATTTAGTGTT
ATGACTGTCTTTTCATTGTATATCTTTTGTTTACAGTAATTAAAATTACCTGATTTTTAC
TGTAACTCTTCTATCATGTGAGCGATTTTTATTTTGAATTATAGTCCTACAAAACACTAT
TTTTATTATTTTTTCGTTTTATTTTATTATTTAAGATATGTTTTAATTTTTGTTTATGTT
AACTTAATTTTATTACTACCTTATATTTTAAGGTTTGTCGAAGTAGAAACATTATGTTGC
GTTTTCTGAAGCCACTTGTCTTATTTTATCAAGTGGAGTTCTCGATTTCGTTTTTGATTT
AATTAGCTTTTGATATGACTTAATTTCACGTAAGTGTTATTGTCGTGCTGAATTTGTGCT
TCAGTCAGTCACCTTCCACTACCAGAATGCTAACGTACCTTTCCTTTTGCTGTCAATGTG
CATGGTCGTGAAGAATTGCTAAATGTATACATATTATTAAGAATAGTTAATGAATGTTCA
ACGTTGTGATGCGTTCCCGTCAGCTGAGACGCGTCTCGAAGCGGGGCCTGCGCCCGTGGT
ACCTCACGCCAGATTATAAATGACACAGCGTAACACTGACTGTAGCGCAGTTATTGTTCT
GAATCTTGTTAATAGGTTTCGCAGCACCGCGAGTAAGTTCTTTCGTGTGTTTGTACAGAT
ATCGAGCGATGATGGCAAACATAAATGGACACTTTCAGTTCATGCCCGGGATAGTAGGAG
TGCCCGCTCTCCAGCATGGACTGACGCCGATGCAACCTGGCTTGGCACCGATCCTACCTG
GTCAGCCAATACACATAATTCCCAACATGTATAATCAATTCGCGATGCCACAACACGTCG
ACCCCTCTGCTTTCGGTGCCCAGTCCATGCAGGGAATGCCGCCTCAATCGATGCAGTCGC
AAGGAATCCAACCACAATCAATGCAATCCCAGGGAATCCAACCGCAATCGATGCAACCCC
AAGGAACCACACTGCAATCTATGCAATCCCAAGGAATGCAACCTCAATCGATGCAATCTC
AGGGAATCCAGTCACAATCGATACAACCCCAAGGAGTCCAACCGCAATCGATGCAATCCC
AGAGTATCCAACCACAATCAATGCAAGCCCAAGGAATCCAAACGCAATCGATGCAACCCC
AGGGACTGCAATCGCAGCCACAGGGATTACGGCCCGTGCAGGCTGCCTCTGTGGAAATGC
CCGAACTGATTGACCTGCAACAAAATCCGAATTTCGTTCAACAAAATATGCCGTCGGGTC
CGCGTCGCATCTACGATCTTAACTCTGGCAATCCGAACTTTAACTTCGCCCAGCAGTATC
AGCACCCTGAGTATCCGACTTCGGTGTATGGGGTGCCGGAAGGATCCAACCAAATGTACA
TGCCGACGGCTTCTAACCTCTACCCCTTCGAAGACGGAGCAGCGCCAATCCAGTCCCCGA
TCGACATCCGTTCTGAATTGCGATCCGACATCCGCGTGAACATCCCGGCTCCGCAGTATC
CTTCGATGCATCACGTCCCGAGGACCGAAGTGACCTGGCCAGTTGGGCCGATGCCCCCGA
TATCCCAGATGTCTCAAGGACAACAAGTGCCCCCCGGCCCACAGGTGCCTGTTACCGATG
TATACGCTTTCGAAAATATCCGTGATGCTCTGCCAACTGTAGCTCGCAGCTCGGCCCCTC
TAGACAGGCGTTTCCCATCCGATAGACGCGTCGTAGGATCCGAGCGTGGAGTACCTCCAC
CTCACCCGTCCTTTTTCGCGGACGGCGCCGAAGATCAACTCGAAGAGGAGCTACTCGCTC
TAGAGCGTCGCATAGACACCGAATTCAAAAGCGCTGATTAGACTCCGGCGCCGGAATACG
TTCAATGTCTGTCTCTGTGCATTACTTTTGCGTTTTGTTCACGGCTTTGTACTTCTTGGA
TAGATAATCGAAACAAAATCACTATTAACGAAAACAATACATTTCATCAAAGCTTCATGT
TATTTAATACCCTATCGATCAATCGAGAAATTATATTAATTAAATGTATAAAAGATATAA
CTGTCAAAAGTTTTTTAATAAAAAATATGATAATAATGAGATCGTCCATTGGGCACGCCT
GGTCGTGGTTTTATGCTAATGAATTTTAAACGGGTCGTATTTTATGTAATTTAGTGTTTT
ATTCTATTAAATTTTATTTTGTTTGTATTATAGTAATGACGTCCCATTGTATTATACATT
CAGAAACGCGCAGTATTATTAAATACATATGTATATGGTCACAGGGAACTACTTAGCCGT
GAACAATTTATTTATTTATAATTTTATTTTCTTGCCGAATGATTTAAGTACTTAATTTTT
TTAAACTGAATGACAATCAAATTATTATTGGCATGTTGATTTAGATTTTATTTCTTCATT
TATTTGTATTAATACCATCACTTGCTTATAATTACGGAGTAAAGATATACGCATCTTATA
AAATTGACATGTAAAATTAACACTCTTTTGGTGGGCTCAC
(5500 bp)

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