SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoEE_comp69993_c2_seq10
Scaffold_idBomo_Chr27
NCBI non-redundant
(nr)		PREDICTED:_collagen_alpha-1(III)_chain-like_isoform_X6_[Bombyx_mori]
Ontology
GO:0001105 F transcription coactivator activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0007275 P multicellular organism development
GO:0007367 P segment polarity determination
GO:0008587 P imaginal disc-derived wing margin morphogenesis
GO:0016055 P Wnt signaling pathway
GO:0030177 P positive regulation of Wnt signaling pathway
GO:0045944 P positive regulation of transcription by RNA polymerase II
Transcript
Level		FPKM:1.39 TPM:2.42
ORF EntryO_BomoEE20335_complete:A_BomoEE_comp69993_c2_seq10
Sequence
(Nucleotide)
GCCGTATCATTAAAAAAAAAAAAATAAAAAAAAAACAAAAAAAAAAAAGGGCCTTATCAT
GAAGTCAGTAAGTTTCACAATAATCATTGTGACCTACGAACAACTTAACAAATTGTGTCA
GAATCACAACCAATAGTTTGCATCTTAATTTCATCTCTTATTTAATATTACACAAACTAT
TATTATATCATTGCTCTTCACTTATCCTAAAAACAAGAACCATTCTTTACCTTAAAATTA
ATAATTACATTTAAATTACGACTATCTAATTGCTAGCGGGTGTTTCTTACTGGACTGTTG
TGCTTATACTCACAATAATTCCACTCTCTACTAACTTCTGAGATCTTAAGCTGCATACAG
ACTGTATGAACACACAAATATAAACTAGAGTTTATCATAGACAAAAATCTATGCACTTTA
TTTCTATCATAATGTGTGTATCTTCTCAGGTTTAAATTAAATTGTAACAATGTATAATAA
TTTCTGACGATTCAAATATTCTTCCAAATTCTGAAACGACCTTATAAGCTAAACAACAGT
CTCAATCTCTCATACAATTTACGCACACCAAGCATTCGTCATCTTGACTAATTAACATTT
CAGAATAACGAAGAATAAATCAACTAAATAAATATTATCTCTGTATGCTGCACAGTCAGT
ATACAACTTGAAAATATGTCCACACTATCGAGTAGGCGTTTGCTTTTTTTTTTTTCAATC
GTAAAAAAACTTCTGTGAGTACGTTCAATTTGAAAAAATAAAACATTTAAGAGTAATATT
TATACAGAAATACGTCTATTCGATAGTGAGATACGATCCTCGTACGACAGCAGAGAGGCG
ACACTGACGTGACGTCACGGCTGCGTCTTCCCTCACTGTACAACCGTCACCATTCGAAGC
CTGCATCCGCCGGGGTTCATTGCTTTACAAACAAGGCATTAGTTCATCAAGGCCACTGTG
ACATCCACAATGTGCGACTACTAGCCTAGCATATTAATATGTCCTATGTACTATCGAAAT
AAAACAGTGTTGCGTTCCATTATTGGCATTGTTCGTACAGAATTACAGTTAATAAATTAA
AATAAAGACGGTTAATAATATCACGAAATAAATTCACGTGGCAAATAATATGGCAACAGA
CGATTTAAGTACTTTTAAACATTAAAAACAAAAAAAAATACTATTTAAGACTTGCAAATA
GGCAAGTACTAACCCCACTTTCGGAGCGTAAAACAATTGCTGCACTCCACTATTTTGCAT
CATAAAGTCTAGTATATGTACTGGAAGACAGAAAAACGTTGCTACTCAGATCAAAAGAAA
CAGTCATTACAGCTGGTACACAAATTCCAGAGTCGTGCTGGCCGACGCGACGAGCCGAAA
CGTTACATTATACGAATTTCATTAATAGAGTATCCGTAAAACTAAAGCGGACAAAACATA
TATGTTAATGTAGTTGTGCGTCACTCCAGAGTCGAGCGGAGACCTCGCGTCCCGGGTCGG
GCTCCGGTAATTTCAAAATTGACTAGATATCTGTGTGCATAGGAAACGTACGTAAAACAG
CTAAGTAAAGGAACCGATACACTGAAGGTCTGGCATGTCCGTGTAAAAAATACTAAAAAC
TAATTTTATTGCTATCAGCAAAAGTAACGTTTAAAACTGTAGTTCAAAGAACGCAGAGCG
GAGGGGGTCGCAGTCAGACAGGCGGCGGCGGTCATCACTTGGGCGGCTGGTAGGGCGGGT
AGGGCTGGTGCGGCTGCGCGGCGCGGCTGCCCGTCGCGTACAGCTGCTGCTGGAAGTTGT
GGAACTGGGCTGCGTACGCGGGGTCCTGCGGGGACGGCATGAAGCCCTGCCCCTTGAACG
GCGTCGGAGCCACCGAGGGCGGCAGCGGCTGGGCGGCTCCCACGCGCTTGCCGCCGCGGA
ACGTCGCACCGAAAGACTCCGGCGACATCTTGGGCGCGTCGGGGAAGCCGCCGGGGTAGT
GGTGCGGCATGCGCATGGGCGCGCGGTACGGGCCCTTGTCCAGGGGCATCGGGTTGGCGA
CGCCGCGCAGGAACTCCAGGCTGGGCGGCGCACGGGGCCCCGCGCACGTCAGGGCCGCGC
GCGTCGGCAGGTATTGGATGGTGTTGGGTGCGCTCGCTTTCACTTGGACGTTGGCGCCGT
TGAACGACATCTTACCGCCGCGCGCGCCCAGCATGCCGTCGGGGCCCATTCCGCCCCCCG
GCCCGCCCATAGGACCACCGCCCATCTTTGGGCTCAAGCTCATGTCTCCGGGAAAATCAC
CTCCACCCATCATGCTTTCCATCGGCCCGCCCATTCCGGGTCCTCCCATGCCGTCCATGT
GGCAACCCAAGTCGTTGATCATCATGTGGGGATGCGAGTGAGGGTGCATGGCGTGGTGAT
GCTGCACGTGATGCGGTCCGAAGGGCCCCATGTTGTTGGGGGCGGGCGGCATGGGCGGCG
CCCCGCCCACCGTGTTGGTGAGCTGCTGCGACATCTGCGCCAGGGACGAGATGGGGTCGA
AGGAGGAGGTGGCGGGTCCGAGCGGTCCGGCGGGTCCCTGGTTGGGGTTGATGGGGATGT
TGTCAGGCCGCCCGCTAAGACTGCACGCACCAGGGAACCCGCCCGGGAGACTCGTACTGT
TCGGACCCCCTGATAACGTAGGCTCAGTATTGGATGAGAGGCTATCCTCAATGTTACTAA
CACTCGGCGTGGTGGAGGCTATACTACAGCTGCCCTTGTTCCCGCAGGCGGCTGACGATG
AGGGCGCGTAGGGTCCCTGGTTGAGTCCCGACTCGCGCTGAGGCGTCTTCGATGCGCTAT
CTTGACTTGACCTGTTCGACGACGGACTGGGCCTTGATTTTTCATCTTGTCCACACTTTG
TATTTGATACAGACGTAGGTGTCTGCGGATTATTGAATCCTGGACTTTGTTCCAGAGAAA
ATCTTCCTGCTCTTTGTTCAGATAACGACGAGTGAGGTTCTGGGGTCCCCGGCATCATTC
CAGCTGGTGACTTTTGATTTGAATTTGATTGTGGTGTTTGTCCTCCACTGTTCGACGGGG
GTCCGTTGTCTTTTAAAGACGTGTTCGGCTGTTTTTGTATCGTTAATTCTTGTCCTGGCC
CGTCCTGTTTGGGTCCCGGCTTGCAGTGCGCCGGACTGTTGAGGCCCGATCCTGCCCGGG
ACGCCTCAGCTGACATTGGCATCTGTACGGAGCCGTGACCCGGGGATTGTGTTGCTATAG
GCACTGAGGCAGAGCGGTGTAGGGGTGAGGCACCATACGGGGGCGGAGGCAAACAGCTTC
CTCTTTCGGAACAAGGGGACTTCACTTGCGTACTTAATTCGGTGTCCATAGATTTAGGAT
CGTCAAAGAACTGATGTTGTAATTTTTGCCAGTCGATATCCGGACCGCCGGGACTCTTGG
GGCTGCGCAGACCGGGCTTGTGGCCCAGTCCCGGAACCAACCCTGGACCCAGCCCGCCGG
GGTCTCCTGGACCCATATTTCTTCCGCGTCCGTACTCATCGCACATAGGTCCGTTGACGG
GCACTCCGTGGTGGTCGGGACCGCAGTCGCCATGCGGCATCATGCCTCCCATCATACTCC
CATCCATCATTATACCGCCGTGAAACCTACCGTTCATCGCGTTCAGATTGGGCCCAGGTA
TCATTCTGGGTCCCATATGTGGTCCGCCCATCATACAGGGCTTAGGACCTCCCATACCTC
CCATTGGGTTCGGCATACGCCCCATAGGTCCCCCACAACCTCTACCCATATGCATGTCTG
TGCACATTCCCGATTTCATGTCAGGTCCTCCACATGGTCCACGAATTCCTTTCATTCCAC
ATGGCCCCAGAGGTCCCATGGGACCATTAGGACCCATACCACCCATCATGGGTCCATTAG
GCCCCATCATTCCATTGGGACCCATAGAACCGTGACCCATTCCCATACCGCCCGGTCCAC
CCATGCCACCCATCGGCCCGCCAGGGCCCATGTGACCTCCCATAGGGCCATTTGGGCCCA
TTGGACCACCCATAGGTCCATTTGGACCCATTGGGCCAGCCATTGTACAACTTGGTCCAG
AGTTCATATTATTTGACATCGATACCATGGGTCCATTAGGCCCAGGTCCCATAGGGCCAT
TAGGGCCCATTCCAGACATTGGTGGAAAGGGCATATTCATATTTGCCGTAGAATTTGGAG
GGTTAATATCGTTAGGCGCTTGCGAGTTGTCTCCTGAACCTTGGTTGACATTGTTTCCTC
CACTCTCAGGGAATAACATTTGTTGCATTTTTCGTATCGTTGCAAGCTGCTCTTCGCGAT
GCGCACGCTGCTGTGGCGTCAGGTTCTCATCTGGTATTTTTACGCCTTTAGGTCCAGTTT
GACAATCTCCACCATCTGCAGAGCCTGAATCGGGCGGTTGGCCCGATGCTTCCGAGCATG
CAGGTAATTGTCCCGGACCATTTGACATGCCATTAGACATTACAGAGGGGTTTTTGGTGT
CCCAGGGCATTTCACCATCAGCACCGAGGCCGTCCATGACACCGCAGGACGGGGTGCTTC
CTGGAAACCCATCCATGGGACCCATACCAGGACCCATTTGACCCATCTGTCCAGGTCCAC
CTTTCATCATCATCATTTGATTACCTGGTCCACTCATTCTGTTTGGCCCCATCATACTAG
GACCCATATGACCCATTCCACTGTGACCCATCGGCCCCATGTTGGGGCCCATAGGTCCAC
CCATCATATGACCCATTTGATTGGGTCCTCCAATCATGTTAGGCCCACCTCGCATTCCAC
CCCGTGTTTTTGCCATAGCTAAATTGTTCAACCACTGAGCAGGACTTTGTTTATTGAACT
GACCAATTTTTAATGGGTGTTTCTCTAAGTATTTCTTAGTTGCAGGTTGAGCACAATGGT
ATGCAATAATGGAGTGGTGCTGACCGGAAAGCACTGCTTCTGCTCCTTTATTTGCCATCA
TTGTAGAGAATACGAAGATTTGACTTTGCTCCATGCTGCCAGACTGCTTGCTCATTACAT
TCGACGGAAGTGTTTGTGCTTCACTAGCAGACATAGGCCCCATAGAAACCCCAGGACCCA
TAGGCCCTCCACCTCCCGCCATTCTACACGAACCCATGTTATCTGGGCCATTTGGATTAC
GACAGTTTGGGTTTCCATCCTGAAGATTATTTGTCGAGCTTCTGAGGCCTGTCTGTGGAT
CCAAAATGTCGTTCGAGTCTGAAGATAGCCTTTCTGATTTTAACGAGCCAGGTCCACCCA
GTTCGCAGGAAGGTGATTTTGTTGGGTCACCGTCGCTGTCCATGAGGCCGTCGATCTCTG
TTTTAATGCCGTCAACTCCAAGGTCTGACGCAGAATCTTCGCCAGAGGGCTGACTATGGG
GTTCTATCTTCACACGATGCGTGTCTTCTGGTTCTTTCTTCAGCGCCGCCGGAGTGGGCA
GCGACGCCGAGGGCGGACGGGAACCGTGGCCAGGCTCAGCAGGGTCACTGGGCTCGTCCT
TGAGGCGGGCACCTCCACCCTTCTCCTTCTCCTTAATCATACCTCTGCGTGCCTTCGCCA
ACTTGAACGATTACCGCCTCACGACGGATTCACTTGCACTTGATGACACAAAACACTGTG
TTTTATCACATTTATGTAAGTCTCATCGTATTATAAAAACCAGATTTTAATAAAATTCTT
TCTATCAGCATTAACACAAATCACCACGCACACACAACACAACATACATATATGCGACAA
CACTAGCGACGGCCATCTTCCGA
(5783 bp)

- SilkBase 1999-2023 -