SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoEE_comp69962_c0_seq2
Scaffold_idBomo_Scaf126
NCBI non-redundant
(nr)		PREDICTED:_Usher_syndrome_type-1G_protein_homolog_[Amyelois_transitella]
Ontology
GO:0001917 C photoreceptor inner segment
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0005856 C cytoskeleton
GO:0005886 C plasma membrane
GO:0007605 P sensory perception of sound
GO:0015629 C actin cytoskeleton
GO:0016020 C membrane
GO:0030507 F spectrin binding
GO:0032391 C photoreceptor connecting cilium
GO:0036064 C ciliary basal body
GO:0042472 P inner ear morphogenesis
GO:0042803 F protein homodimerization activity
GO:0045494 P photoreceptor cell maintenance
GO:0050953 P sensory perception of light stimulus
GO:0050957 P equilibrioception
GO:0060113 P inner ear receptor cell differentiation
GO:0060122 P inner ear receptor cell stereocilium organization
Transcript
Level		FPKM:5.08 TPM:8.86
ORF EntryO_BomoEE20149_complete:A_BomoEE_comp69962_c0_seq2
Sequence
(Nucleotide)
CAGCAATGCCAGGGGCACAGCCAACTGCTGTCTACTGAATTTAGGATGTAAATTTTTTAT
TCAAATTTCACACTAGACAGAGAATGAGGATATTAGAATTAAAAAAAAAATCATGTCTAA
ATAAAAATTTAGAGAGTTTCTTAGCTTTAAGTGTATATAGTATATATCTTATATTATATA
TTTATATATTATAGTATATATTTTGATTCGTATTAAAATGATTTATTTTGTATAAAATAT
CACATCCTGTTATTTGTATACATAAAGAAATGTAATATAATTATTTATTTATGTAAAGAA
ACTCCTACGTACTTTTAAAAAGATTTTTCTTAGAAAAGTTCACTCACTTGTCATTCAATG
AAGAGAAATAATTCACTCTTACATAATATACTAATAATATTGTATAATATATTAATTTAA
ACACACATAGATAAGGACTTTAAATATTGTTTTCGTATTTATTTTACAGACGAGTGAATA
TTTTGTTAGAATAATTTATTATAGTTTTAATTTTATATTGTCAATAAATTCGCATTTATA
ATACAGAAAACGCAGTTAAATCTTTCATTGTCCGATGTATTTTATATCATTATATTTGGA
ATTATTTAAAAGTGATATTATTGTTATGCTGACCGTACTAATATTACGTTATTAGCTAGT
AAGAAAAATCACACAAACTCCATAGGTACTGGCGACTGATGACAATGACAATGACAATGG
CCGCCGTCAGATCGCCGTGTCGACTATGGGTCCCGGGTTAGTTAACGCCTGTTTCCTCTC
TTGGACAGCTGTGACGAGTTTTCTGTACGGACCTAGAGGTAGGCCGAGCGATTTCATGTC
GCTCTCGGTCAGCAGCATGAGCGCTTCCAAGTCGATTTGTTCGTCTCGAAACTTCTGCAC
GTACTGCGAGAGGCCCCACGCGGTCAGGAAACGCTCTAGGGACGCCGAGCCGGACTCATC
GGCCTCCCCCTCCTCGTCCGAAGTTATCGTCGAGCTCTCTGAGTGCGGCTCGGTCCACTC
GGCGGGGCGGTAGGCGGTGCGGGGGGCGTGGCGCGCGGCCAGTGACCCCGCCGAGCCGAT
GGACAGGTCCTCGCCCGGCGCGCCCGGCATCGCGCCCAGCGTGGCCGTTATGGACCGTCT
AAAGGCTACACTCCCGAATCCTGGTCTGTCGAATATACTGGCGGGCTCTTGCAGCATCAC
CTCCTGTCCTATGCCGCTGTCTTCTCCAGACAGAACCGTGAAATCCGGTTGACTTGCCGA
TCTTGTCAGTGGCGGTTTCTTCTGATCGGTGTCCTCCGTGAACACGTCGGTAACGTTCCC
CCGGTGTTGCGGTCCCGCGCCCAACGTGCCCACGTACATCACTTCACTGTCGCGACGGAG
CCCGGATAATGACGTCAGAGAACGACGACCGGTCGTTTCTAATTCGCCAACCTTGAAGTC
ATCATTCGGTCCATTACGGCCGATCGTGTTGTTGCGCAGTTTGCTGGCGAGGGCCTTCTT
GTAGACGGCGCCGCGGCCCCGGACGCCCGAGTTCACGGTGCCGACCAGCGTGCTGTACGT
CGGGCGGGGCTGCTCGTCCGCCAGGAGGTTACCCTGACTTGTAGATCTGATCATCTTTTG
CTTGAGCGCTATTAGCACGTTGCTGGGCCGATGTGGCATAGTGGACACCTCCTCACCATA
ACCCTGTTCCCACTCTTTGGCCAGCTTCTTCATTTCCTTCTCGGCCATGAGATCAGCTTT
GCTCTGTCTTTTCTGATACTGCTTCTGCGATTTCTCGTAGTCTTTTCTGGCTTTCTCTTT
GAGCGCTTTCGATTTCTTCTTATCATTGTTTTCTAGTTTTGCTGTAGACTGGTCCAGGTA
CCGGAGTATATCCTCTCTGCCATTAATAGCGGCCAGCTCCTGAGCGGAGTGACCGTCGAC
GTCCATAGCGTACACATTAGCTCCGAAGTTGACCAGGAAAGTCACGCATTCCTTGTGACC
CCGGGCCGCTGCTAGATGAAGGGCTGTATTGCCGAAATAGTCGGCCTTGTCTGGTTCACC
GCCTCGCCCGCATAGTAGTCTCAGGGCTTCTATGTGTCCTTCGAAAGCAGCCCACAGCGT
GGGAGTCATTCCAGATTCATCTTTATTATTGCATTCTTTGCGTGTCGCTTCCCGCAGTAC
CTCCAGTAGACCATCTTTGGCTGCTTTGTGGAACCTGTCCGTGGACATTTTTGTACTTCT
TTTTTTTTCACACTACGAACAATGATTTGAGATCCAAACGAGGTCCGACAAAAGTTTATT
CAACTCATTTTTATCAATTCCATAAATTTAACACATAAAAAATTCCTAAGGGAAAGCTCT
TTATTTTAACTATATTTTTAAACTTAAATATCAGATAACTTGACAACAAAATTATTTAAT
TATATATAGTAGTGATATAATTGATTTATTTAAATTTATTTTCATAAAATGATGTGCACA
AAAGTACTTTTAATTCAACGCGAAAAATAATAACAATCTCCTAACAGAATAACCGTCA
(2518 bp)

- SilkBase 1999-2023 -