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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoEE_comp69947_c0_seq6
Scaffold_idBomo_Chr25
NCBI non-redundant
(nr)		PREDICTED:_pre-mRNA-processing_factor_39_isoform_X2_[Amyelois_transitella]
Ontology
GO:0000243 C commitment complex
GO:0000395 P mRNA 5'-splice site recognition
GO:0005634 C nucleus
GO:0005685 C U1 snRNP
GO:0006396 P RNA processing
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0030627 F pre-mRNA 5'-splice site binding
GO:0071004 C U2-type prespliceosome
Transcript
Level		FPKM:1.49 TPM:2.60
ORF EntryO_BomoEE20101_complete:A_BomoEE_comp69947_c0_seq6
Sequence
(Nucleotide)
TAATACCATAGATAATACACTTATGTTCAAAAGAGAAGCTAAAAGCTCAAAAAGCGATAA
ACTAAAGCAAATTGCGTCCAAATACGAAATAAAACGTAGCGACTAAATACTTTTCCAACT
CAAACTACTACTATAGCTGTTTCGCTTAGATTGTAGTGTTTGATCGATATATCTCGTTCT
ACCAGATTTCTAAACTTGAAACATGGAAGATGAAACAAGCTCCGATAATCAGAAAGGATC
TGAAAATCCCATGGATACAGACGAAGGTCCTTTGATAAATGAGAACTCCAACGGACTTTC
TCATTTGTTAACAGAGGGCGAATTTAATAGTGTCGATGCTGCTGTTGATGAGTCGTCGAC
ATCTAATCAATGTTTCTTGAACGCCGTGGAATTATCAGCTGGAAGCGCTGGTGACTACCT
CGAAAACAACGGCCCTCGCTTCAGTACAGATTCTTTTGACATTGGTGATAATGCTGTAAC
TTTTCCCAATGATTCTCTAAATAGCGCATTGACTGAAGATAATTCTATTCAAAGTGACTC
TGCATCCCACAAAGCAGTTTTAGACACAGACAGTAGGCAGTCTGAAAGTCAACATGCAAC
AGATTCCAATGTAGGAGAGATAAATGAAAACTCTGGCAATGACTCTAACTTCGCCACTGA
GCATGTAAATTTAAATGTGGATAAATCAGAGCAATTGGAAATTGTTGAGCCATGTAGCAG
TCCAGTAAAAGATCCAGTGATTAAGCAGGATGAAGGCAAAGAGTTTAAAAACCAAAGAGA
AGTAGATGATATCAAAGAACAATCACAAGACTCAGCAAGTAAGATTGGTGGTGCTGAAGA
AACAGAAGTAGTATCAGAGGATGAACTTCCTGAAGTGCAAAAGCCGAGCATCAAAGATGC
TGAGAATGTATCTGATGATGAGTTGCCGGGGCCGAAACCTGCAGAACTGCCTGCTGATAC
AGAGGTTGTATCAGAAGATGAGCTACCTGCATCCAAGAAAGAGTCTAGAAAACGAAAACC
AGATGAAGAGAGAAGTAATTATGATCCAGGATCACCAACATCAGAAGGTGAATCTTCCAC
AAAAAAACAAGCTATTACCAAGAACGGCGAAAGCAAGCCCATACCTGCCGAAAAGAGACC
TTCAGTTGATGAAAAACCTAAAAAGAAAGTTTTACCGGAATTGGAAAAGTACTGGAAAGT
TGTGAATGATGATCCGACTGACTTCACTGGGTGGACCTACCTATTACAATATGTCGATCA
AGAGAGCGATGTTGAAGCTGCACGTGAAGCCTATGACGCCTTTTTATCCCACTATCCTTA
TTGCTATGGATATTGGAGAAAGTTTGCAGATTATGAAAAACGTAAAGGAAGTAAAAAGAA
GTGCTTAGAGTGCAACGAGGTCTACGATGTTCGTATACGAAAGACGTCAGGTCACACCGG
AGAGTTGTATAACCGTCACATAGATATTGTTTTAATTATACTTACGATAAGGTGTATTGT
TTGTATTCTAGTGCTTAAGTTTAATACAACTTGTACATGCATGATGTATTGTAATACATA
CTTTATTGTATATATAACTAAGTACATAATGATTTATGGATAATTAAGATGAAACTAATC
CATGAAAGCACACTAGCGTGGATCACAGCGGTTCTCCATATTTAGCCATTTCGAAGATCA
CGGCGAAGACAGCGAGCCCGGCAGCGTCCATTACGAACAGGTGTAATATGCCCGAACAAA
CATTTTATTTTAAATAGATAAAGTGAGATGTTGCGTTACATTGGTGTATTTATTGCTTCG
AACAAATAGGCGACACGTACCCGACCTCTCGCTTCCTCTATTTTGAAAAATTGAATGAAA
AATATTATGATATAATGCTATTGAATATTCCCTTGCTATCATAGTATTGTTGTGTCCACG
ACAATGCTTGGACGCTCGTGGAAATTGTTTTCAAATTCAATCTTGATTTTCAGGTTTTGG
AAAGGGGACTTAAAGCTATACCTTTATCCGTAGACCTCTGGATACATTACCTCAATCATA
TAAAAGCGACTAAAACCGAAGACCATGCGTACATCAGATCTCAGTATGAACGAGCCATAG
ATGCATGCGGACTAGAATTTCGCTCGGATCGTCTTTGGGAGTCTTACATCAAATGGGAAG
CGGAAAATGGTTCCGCTCTCAATGTCACGAATATCTACGATCGTCTTTTGGCAACACCCA
CCTTAGGGTACACGTCACACTTCGACAATTTCCAGGAGCACGTGATGTCGGAGCCGGTGA
CCGGCGTGGTGAGCCACGCGGAGCTGGTGCGGCTGCGGGGCGAGGTGCGGGACGCGGCCG
GCGCGCAGCCCAGCCTCGACCTGCCGCCCGGGGAGGACGAGCCCGTCGACCATGTCGCAT
CCGATGAAGAGGCGCAAGCCATCAAGGAACGGATTGTTGCAGCTCGAAGAAAAATTCATA
AAACGACCGGCGAAGAAGTAACTGCGAGGTGGACTTTCGAAGAAGGAATCAAGCGGCCTT
ATTTCCACGTGAAGCCCCTGGAACGTTGCCAGCTAAAGAACTGGAAGGCGTACCTCGAAT
GGGAGAAGCACCACGGTTCGTTCAAGCGAGCCCTCGTGCTCCACGAGAGATGCCTCATTG
CATGTGCCTTATATGAAGAATTCTGGATGAAGCTTATAAAGTTTCTGGAAGAACGTGCTG
AACAAGATCCTGAAGTGATAGCAATAGAACGGGAAGTACTAGAGCGAGCCTGCACAGTGC
ATCACCTCGACAAGCCAGAGCTCCACCTACACTGGGCACACTTCGAAGAGGTGCAGGGCA
ATACACTGAAAGCTGCCGAGATACTTGATCGTATAGAGAAAACCTGTCCCAATCTCGTAC
AAATACAGTACAGGCGAGTGAACCTCGAGCGACGACGCGGCGACTACGAGAAGTGCTCTC
AGCTATACGAAACGTACATCAGCACTTCGAAGAACAAGTCGCTGGCGTCTGCGCTCGCCA
TCAAGTACGCGCGGTTCCTGCAGCACGTGCGCCGCCAGCCCGCCGCCGCCCGCGCCGCGC
TCGACGACGCCGTCGCCAAGGACCCGCTCAACCCGCGCCTGCACCTGCAGAGACTTGACC
TCGCCATCAACACTCCCGGCGTCACCTACGAAGAGTTGGATGAGCTGGCACAGTCGTACT
CGAGACAGGAGGGCGCGGACACGGAGGTGAGCGCGCACATGGCGTGGCGCCGCCGCGAGC
TCGCGGAGGAGCTGGGCAGCGCCGCGCACGCCCGCGCCGCACACGCGCACGCGCGCGCTC
TCGCCAAACATCTCCGCAAGCGCGCCCGCAAAGACAAGCACGACCCGCCGCCGCCGCCAG
CAGTAACTGATTCTAAGAAAAAAGAGAGTACGGCAACCGCCAATTCTGTTCCGACGACGA
ATGCGAATTACTACGCGCCGACGACAAACACGCAGTCCTACGACCAGTCGTACACGCAGT
CCTACCAGCCGACCTGGGGCTACCAGCAGCCCCCCGGGCCCTACCAACACCACCCCCACG
CCTGGCCGCAGTATCCCAACTACTATTAGTAATTTGAAGAACATTCGTGATGGACGTACG
AATCAGTACATACTTTTGATTTCAGTCACCTTTTTCTCCATGTATTAGGTTAGGTTAAGA
TTACGTTTACAATTAACTTTAGAATGTAGCTACAGGCTTTAGATAAGAATTATAGCTACT
ATATTAGTAATTAAAATAATTTGTTTGGATAAACGTATGTTCGTGAAACATAATGTAGTT
GAGGTCGGATTTTTTTATAAATTAAAAACATGGATATTTGTGACTGAATTCAAAGGTCCA
AAGGGATAATGAGCTCATCAGGCCGACAAAAAACTGTATCTTGACATAAAAGTAAAATAA
ATGTATTTTGTAAGTTTTCTAGAAATTAAATGATTGACAGTGGGTATTAATTTATTTTTC
TATACTTTAAATAAAATATAGCTTTTGTTTACTAAATTATGTTTTTACTGGCAACACATA
CAATCAATTTGAATAAAATTTTAAATGATTTCAAAATAGTTTGCTGAACTCATACTCGCT
GTATCTACGCTAAACTCTCGTATCATAAAGAGCCGCTCCCGAACAAAATCAACGTCATAG
ACTAATGGATAAATAAATTGATGATTAATTATAAACTGATCAACGAGGTACAAATTCAAC
TCAGTCTCCTAAAGTTCGCTTTCTCGTTTTGTTTTAATTTATATCTTCTCTTCTGTATCT
TTCAACAACAGTCGTAAAATGTAAAGCATGTGTTTACG
(4298 bp)

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