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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoEE_comp69947_c0_seq5
Scaffold_idBomo_Chr25
NCBI non-redundant
(nr)		PREDICTED:_pre-mRNA-processing_factor_39_isoform_X2_[Amyelois_transitella]
Ontology
GO:0000243 C commitment complex
GO:0000395 P mRNA 5'-splice site recognition
GO:0005634 C nucleus
GO:0005685 C U1 snRNP
GO:0006396 P RNA processing
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0030627 F pre-mRNA 5'-splice site binding
GO:0071004 C U2-type prespliceosome
Transcript
Level		FPKM:1.92 TPM:3.34
ORF EntryO_BomoEE20095_complete:A_BomoEE_comp69947_c0_seq5
Sequence
(Nucleotide)
AGGTGAGTTTTTTTTTGGCCGTAAATAACATATTAAATTGTTTAAGTCACTTGGTGTGTT
GGTAAGGCTTCGACACCAAAATAATGAGTTTTATGTCAATATCTTAAACTCTTGGATTTT
TGTAATATTTGGTCAAATATGGTATTTTGCAATTATTTTTTTTCCCAACAGTGCAACGAG
GTCTACGATGTTCGTATACGAAAGACGTCAGGTCACACCGGAGAGTTGTATAACCGTCAC
ATAGATATTGTTTTAATTATACTTACGATAAGGTGTATTGTTTGTATTCTAGTGCTTAAG
TTTAATACAACTTGTACATGCATGATGTATTGTAATACATACTTTATTGTATATATAACT
AAGTACATAATGATTTATGGATAATTAAGATGAAACTAATCCATGAAAGCACACTAGCGT
GGATCACAGCGGTTCTCCATATTTAGCCATTTCGAAGATCACGGCGAAGACAGCGAGCCC
GGCAGCGTCCATTACGAACAGGTGTAATATGCCCGAACAAACATTTTATTTTAAATAGAT
AAAGTGAGATGTTGCGTTACATTGGTGTATTTATTGCTTCGAACAAATAGGCGACACGTA
CCCGACCTCTCGCTTCCTCTATTTTGAAAAATTGAATGAAAAATATTATGATATAATGCT
ATTGAATATTCCCTTGCTATCATAGTATTGTTGTGTCCACGACAATGCTTGGACGCTCGT
GGAAATTGTTTTCAAATTCAATCTTGATTTTCAGGTTTTGGAAAGGGGACTTAAAGCTAT
ACCTTTATCCGTAGACCTCTGGATACATTACCTCAATCATATAAAAGCGACTAAAACCGA
AGACCATGCGTACATCAGATCTCAGTATGAACGAGCCATAGATGCATGCGGACTAGAATT
TCGCTCGGATCGTCTTTGGGAGTCTTACATCAAATGGGAAGCGGAAAATGGTTCCGCTCT
CAATGTCACGAATATCTACGATCGTCTTTTGGCAACACCCACCTTAGGGTACACGTCACA
CTTCGACAATTTCCAGGAGCACGTGATGTCGGAGCCGGTGACCGGCGTGGTGAGCCACGC
GGAGCTGGTGCGGCTGCGGGGCGAGGTGCGGGACGCGGCCGGCGCGCAGCCCAGCCTCGA
CCTGCCGCCCGGGGAGGACGAGCCCGTCGACCATGTCGCATCCGATGAAGAGGCGCAAGC
CATCAAGGAACGGATTGTTGCAGCTCGAAGAAAAATTCATAAAACGACCGGCGAAGAAGT
AACTGCGAGGTGGACTTTCGAAGAAGGAATCAAGCGGCCTTATTTCCACGTGAAGCCCCT
GGAACGTTGCCAGCTAAAGAACTGGAAGGCGTACCTCGAATGGGAGAAGCACCACGGTTC
GTTCAAGCGAGCCCTCGTGCTCCACGAGAGATGCCTCATTGCATGTGCCTTATATGAAGA
ATTCTGGATGAAGCTTATAAAGTTTCTGGAAGAACGTGCTGAACAAGATCCTGAAGTGAT
AGCAATAGAACGGGAAGTACTAGAGCGAGCCTGCACAGTGCATCACCTCGACAAGCCAGA
GCTCCACCTACACTGGGCACACTTCGAAGAGGTGCAGGGCAATACACTGAAAGCTGCCGA
GATACTTGATCGTATAGAGAAAACCTGTCCCAATCTCGTACAAATACAGTACAGGCGAGT
GAACCTCGAGCGACGACGCGGCGACTACGAGAAGTGCTCTCAGCTATACGAAACGTACAT
CAGCACTTCGAAGAACAAGTCGCTGGCGTCTGCGCTCGCCATCAAGTACGCGCGGTTCCT
GCAGCACGTGCGCCGCCAGCCCGCCGCCGCCCGCGCCGCGCTCGACGACGCCGTCGCCAA
GGACCCGCTCAACCCGCGCCTGCACCTGCAGAGACTTGACCTCGCCATCAACACTCCCGG
CGTCACCTACGAAGAGTTGGATGAGCTGGCACAGTCGTACTCGAGACAGGAGGGCGCGGA
CACGGAGGTGAGCGCGCACATGGCGTGGCGCCGCCGCGAGCTCGCGGAGGAGCTGGGCAG
CGCCGCGCACGCCCGCGCCGCACACGCGCACGCGCGCGCTCTCGCCAAACATCTCCGCAA
GCGCGCCCGCAAAGACAAGCACGACCCGCCGCCGCCGCCAGCAGTAACTGATTCTAAGAA
AAAAGAGAGTACGGCAACCGCCAATTCTGTTCCGACGACGAATGCGAATTACTACGCGCC
GACGACAAACACGCAGTCCTACGACCAGTCGTACACGCAGTCCTACCAGCCGACCTGGGG
CTACCAGCAGCCCCCCGGGCCCTACCAACACCACCCCCACGCCTGGCCGCAGTATCCCAA
CTACTATTAGTAATTTGAAGAACATTCGTGATGGACGTACGAATCAGTACATACTTTTGA
TTTCAGTCACCTTTTTCTCCATGTATTAGGTTAGGTTAAGATTACGTTTACAATTAACTT
TAGAATGTAGCTACAGGCTTTAGATAAGAATTATAGCTACTATATTAGTAATTAAAATAA
TTTGTTTGGATAAACGTATGTTCGTGAAACATAATGTAGTTGAGGTCGGATTTTTTTATA
AATTAAAAACATGGATATTTGTGACTGAATTCAAAGGTCCAAAGGGATAATGAGCTCATC
AGGCCGACAAAAAACTGTATCTTGACATAAAAGTAAAATAAATGTATTTTGTAAGTTTTC
TAGAAATTAAATGATTGACAGTGGGTATTAATTTATTTTTCTATACTTTAAATAAAATAT
AGCTTTTGTTTACTAAATTATGTTTTTACTGGCAACACATACAATCAATTTGAATAAAAT
TTTAAATGATTTCAAAATAGTTTGCTGAACTCATACTCGCTGTATCTACGCTAAACTCTC
GTATCATAAAGAGCCGCTCCCGAACAAAATCAACGTCATAGACTAATGGATAAATAAATT
GATGATTAATTATAAACTGATCAACGAGGTACAAATTCAACTCAGTCTCCTAAAGTTCGC
TTTCTCGTTTTGTTTTAATTTATATCTTCTCTTCTGTATCTTTCAACAACAGTCGTAAAA
TGTAAAGCATGTGTTTACG
(3079 bp)

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