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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoEE_comp69947_c0_seq4
Scaffold_idBomo_Chr25
NCBI non-redundant
(nr)		PREDICTED:_pre-mRNA-processing_factor_39_isoform_X1_[Amyelois_transitella]
Ontology
GO:0000243 C commitment complex
GO:0000395 P mRNA 5'-splice site recognition
GO:0005634 C nucleus
GO:0005685 C U1 snRNP
GO:0006396 P RNA processing
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0030627 F pre-mRNA 5'-splice site binding
GO:0071004 C U2-type prespliceosome
Transcript
Level		FPKM:22.41 TPM:39.09
ORF EntryO_BomoEE20092_complete:A_BomoEE_comp69947_c0_seq4
Sequence
(Nucleotide)
TAATACCATAGATAATACACTTATGTTCAAAAGAGAAGCTAAAAGCTCAAAAAGCGATAA
ACTAAAGCAAATTGCGTCCAAATACGAAATAAAACGTAGCGACTAAATACTTTTCCAACT
CAAACTACTACTATAGCTGTTTCGCTTAGATTGTAGTGTTTGATCGATATATCTCGTTCT
ACCAGATTTCTAAACTTGAAACATGGAAGATGAAACAAGCTCCGATAATCAGAAAGGATC
TGAAAATCCCATGGATACAGACGAAGGTCCTTTGATAAATGAGAACTCCAACGGACTTTC
TCATTTGTTAACAGAGGGCGAATTTAATAGTGTCGATGCTGCTGTTGATGAGTCGTCGAC
ATCTAATCAATGTTTCTTGAACGCCGTGGAATTATCAGCTGGAAGCGCTGGTGACTACCT
CGAAAACAACGGCCCTCGCTTCAGTACAGATTCTTTTGACATTGGTGATAATGCTGTAAC
TTTTCCCAATGATTCTCTAAATAGCGCATTGACTGAAGATAATTCTATTCAAAGTGACTC
TGCATCCCACAAAGCAGTTTTAGACACAGACAGTAGGCAGTCTGAAAGTCAACATGCAAC
AGATTCCAATGTAGGAGAGATAAATGAAAACTCTGGCAATGACTCTAACTTCGCCACTGA
GCATGTAAATTTAAATGTGGATAAATCAGAGCAATTGGAAATTGTTGAGCCATGTAGCAG
TCCAGTAAAAGATCCAGTGATTAAGCAGGATGAAGGCAAAGAGTTTAAAAACCAAAGAGA
AGTAGATGATATCAAAGAACAATCACAAGACTCAGCAAGTAAGATTGGTGGTGCTGAAGA
AACAGAAGTAGTATCAGAGGATGAACTTCCTGAAGTGCAAAAGCCGAGCATCAAAGATGC
TGAGAATGTATCTGATGATGAGTTGCCGGGGCCGAAACCTGCAGAACTGCCTGCTGATAC
AGAGGTTGTATCAGAAGATGAGCTACCTGCATCCAAGAAAGAGTCTAGAAAACGAAAACC
AGATGAAGAGAGAAGTAATTATGATCCAGGATCACCAACATCAGAAGGTGAATCTTCCAC
AAAAAAACAAGCTATTACCAAGAACGGCGAAAGCAAGCCCATACCTGCCGAAAAGAGACC
TTCAGTTGATGAAAAACCTAAAAAGAAAGTTTTACCGGAATTGGAAAAGTACTGGAAAGT
TGTGAATGATGATCCGACTGACTTCACTGGGTGGACCTACCTATTACAATATGTCGATCA
AGAGAGCGATGTTGAAGCTGCACGTGAAGCCTATGACGCCTTTTTATCCCACTATCCTTA
TTGCTATGGATATTGGAGAAAGTTTGCAGATTATGAAAAACGTAAAGGAAGTAAAAAGAA
GTGCTTAGAGGTTTTGGAAAGGGGACTTAAAGCTATACCTTTATCCGTAGACCTCTGGAT
ACATTACCTCAATCATATAAAAGCGACTAAAACCGAAGACCATGCGTACATCAGATCTCA
GTATGAACGAGCCATAGATGCATGCGGACTAGAATTTCGCTCGGATCGTCTTTGGGAGTC
TTACATCAAATGGGAAGCGGAAAATGGTTCCGCTCTCAATGTCACGAATATCTACGATCG
TCTTTTGGCAACACCCACCTTAGGGTACACGTCACACTTCGACAATTTCCAGGAGCACGT
GATGTCGGAGCCGGTGACCGGCGTGGTGAGCCACGCGGAGCTGGTGCGGCTGCGGGGCGA
GGTGCGGGACGCGGCCGGCGCGCAGCCCAGCCTCGACCTGCCGCCCGGGGAGGACGAGCC
CGTCGACCATGTCGCATCCGATGAAGAGGCGCAAGCCATCAAGGAACGGATTGTTGCAGC
TCGAAGAAAAATTCATAAAACGACCGGCGAAGAAGTAACTGCGAGGTGGACTTTCGAAGA
AGGAATCAAGCGGCCTTATTTCCACGTGAAGCCCCTGGAACGTTGCCAGCTAAAGAACTG
GAAGGCGTACCTCGAATGGGAGAAGCACCACGGTTCGTTCAAGCGAGCCCTCGTGCTCCA
CGAGAGATGCCTCATTGCATGTGCCTTATATGAAGAATTCTGGATGAAGCTTATAAAGTT
TCTGGAAGAACGTGCTGAACAAGATCCTGAAGTGATAGCAATAGAACGGGAAGTACTAGA
GCGAGCCTGCACAGTGCATCACCTCGACAAGCCAGAGCTCCACCTACACTGGGCACACTT
CGAAGAGGTGCAGGGCAATACACTGAAAGCTGCCGAGATACTTGATCGTATAGAGAAAAC
CTGTCCCAATCTCGTACAAATACAGTACAGGCGAGTGAACCTCGAGCGACGACGCGGCGA
CTACGAGAAGTGCTCTCAGCTATACGAAACGTACATCAGCACTTCGAAGAACAAGTCGCT
GGCGTCTGCGCTCGCCATCAAGTACGCGCGGTTCCTGCAGCACGTGCGCCGCCAGCCCGC
CGCCGCCCGCGCCGCGCTCGACGACGCCGTCGCCAAGGACCCGCTCAACCCGCGCCTGCA
CCTGCAGAGACTTGACCTCGCCATCAACACTCCCGGCGTCACCTACGAAGAGTTGGATGA
GCTGGCACAGTCGTACTCGAGACAGGAGGGCGCGGACACGGAGGTGAGCGCGCACATGGC
GTGGCGCCGCCGCGAGCTCGCGGAGGAGCTGGGCAGCGCCGCGCACGCCCGCGCCGCACA
CGCGCACGCGCGCGCTCTCGCCAAACATCTCCGCAAGCGCGCCCGCAAAGACAAGCACGA
CCCGCCGCCGCCGCCAGCAGTAACTGATTCTAAGAAAAAAGAGAGTACGGCAACCGCCAA
TTCTGTTCCGACGACGAATGCGAATTACTACGCGCCGACGACAAACACGCAGTCCTACGA
CCAGTCGTACACGCAGTCCTACCAGCCGACCTGGGGCTACCAGCAGCCCCCCGGGCCCTA
CCAACACCACCCCCACGCCTGGCCGCAGTATCCCAACTACTATTAGTAATTTGAAGAACA
TTCGTGATGGACGTACGAATCAGTACATACTTTTGATTTCAGTCACCTTTTTCTCCATGT
ATTAGGTTAGGTTAAGATTACGTTTACAATTAACTTTAGAATGTAGCTACAGGCTTTAGA
TAAGAATTATAGCTACTATATTAGTAATTAAAATAATTTGTTTGGATAAACGTATGTTCG
TGAAACATAATGTAGTTGAGGTCGGATTTTTTTATAAATTAAAAACATGGATATTTGTGA
CTGAATTCAAAGGTCCAAAGGGATAATGAGCTCATCAGGCCGACAAAAAACTGTATCTTG
ACATAAAAGTAAAATAAATGTATTTTGTAAGTTTTCTAGAAATTAAATGATTGACAGTGG
GTATTAATTTATTTTTCTATACTTTAAATAAAATATAGCTTTTGTTTACTAAATTATGTT
TTTACTGGCAACACATACAATCAATTTGAATAAAATTTTAAATGATTTCAAAATAGTTTG
CTGAACTCATACTCGCTGTATCTACGCTAAACTCTCGTATCATAAAGAGCCGCTCCCGAA
CAAAATCAACGTCATAGACTAATGGATAAATAAATTGATGATTAATTATAAACTGATCAA
CGAGGTACAAATTCAACTCAGTCTCCTAAAGTTCGCTTTCTCGTTTTGTTTTAATTTATA
TCTTCTCTTCTGTATCTTTCAACAACAGTCGTAAAATGTAAAGCATGTGTTTACG
(3715 bp)

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