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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoEE_comp69947_c0_seq2
Scaffold_idBomo_Chr25
NCBI non-redundant
(nr)		PREDICTED:_pre-mRNA-processing_factor_39_isoform_X1_[Amyelois_transitella]
Ontology
GO:0000243 C commitment complex
GO:0000381 P regulation of alternative mRNA splicing, via spliceosome
GO:0000395 P mRNA 5'-splice site recognition
GO:0000398 P mRNA splicing, via spliceosome
GO:0005634 C nucleus
GO:0005685 C U1 snRNP
GO:0006396 P RNA processing
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0030627 F pre-mRNA 5'-splice site binding
GO:0071004 C U2-type prespliceosome
Transcript
Level		FPKM:5.48 TPM:9.56
ORF EntryO_BomoEE20084_complete:A_BomoEE_comp69947_c0_seq2
Sequence
(Nucleotide)
TAACACCAGGTGGACTGTGAGCTAGTCCACCCATCTAAACAATATAAAATAATAAAACAA
TATTACATTAACGTGCACTTATTGGACTATACGCGACAGTACTATGGTGATGGACACAAT
TGTAAGTCAAAGAAAGATTGATCAACTTGTTTAGCAAAAAGCAACGATGTTGACAATATA
AAATGGATTCGTATGGATTTGGTCAGATTTGTTACCGACCTACTAGTTTCGCGTATCGAC
CACCGGATCCTATCCGATCCCGACGACTGACCTAATATAGTCCTCTAACGAAGACCTTCA
AAGTGCAATCCTGCGAGTACTTGAGAGATGAAAAGGCGAGACAACCTCTTGGTCTACTAG
AATGAAATAAACCTTTTCGGCTACAATAATTAAAAAACTAAATAAAAATTAGTACTTACA
ATTAACATACCATACATAAACAATATGTTCATTAGGCATCCGATGAAGAGGCGCAAGCCA
TCAAGGAACGGATTGTTGCAGCTCGAAGAAAAATTCATAAAACGACCGGCGAAGAAGTAA
CTGCGAGGTGGACTTTCGAAGAAGGAATCAAGCGGCCTTATTTCCACGTGAAGCCCCTGG
AACGTTGCCAGCTAAAGAACTGGAAGGCGTACCTCGAATGGGAGAAGCACCACGGTTCGT
TCAAGCGAGCCCTCGTGCTCCACGAGAGATGCCTCATTGCATGTGCCTTATATGAAGAAT
TCTGGATGAAGCTTATAAAGTTTCTGGAAGAACGTGCTGAACAAGATCCTGAAGTGATAG
CAATAGAACGGGAAGTACTAGAGCGAGCCTGCACAGTGCATCACCTCGACAAGCCAGAGC
TCCACCTACACTGGGCACACTTCGAAGAGGTGCAGGGCAATACACTGAAAGCTGCCGAGA
TACTTGATCGTATAGAGAAAACCTGTCCCAATCTCGTACAAATACAGTACAGGCGAGTGA
ACCTCGAGCGACGACGCGGCGACTACGAGAAGTGCTCTCAGCTATACGAAACGTACATCA
GCACTTCGAAGAACAAGTCGCTGGCGTCTGCGCTCGCCATCAAGTACGCGCGGTTCCTGC
AGCACGTGCGCCGCCAGCCCGCCGCCGCCCGCGCCGCGCTCGACGACGCCGTCGCCAAGG
ACCCGCTCAACCCGCGCCTGCACCTGCAGAGACTTGACCTCGCCATCAACACTCCCGGCG
TCACCTACGAAGAGTTGGATGAGCTGGCACAGTCGTACTCGAGACAGGAGGGCGCGGACA
CGGAGGTGAGCGCGCACATGGCGTGGCGCCGCCGCGAGCTCGCGGAGGAGCTGGGCAGCG
CCGCGCACGCCCGCGCCGCACACGCGCACGCGCGCGCTCTCGCCAAACATCTCCGCAAGC
GCGCCCGCAAAGACAAGCACGACCCGCCGCCGCCGCCAGCAGTAACTGATTCTAAGAAAA
AAGAGAGTACGGCAACCGCCAATTCTGTTCCGACGACGAATGCGAATTACTACGCGCCGA
CGACAAACACGCAGTCCTACGACCAGTCGTACACGCAGTCCTACCAGCCGACCTGGGGCT
ACCAGCAGCCCCCCGGGCCCTACCAACACCACCCCCACGCCTGGCCGCAGTATCCCAACT
ACTATTAGTAATTTGAAGAACATTCGTGATGGACGTACGAATCAGTACATACTTTTGATT
TCAGTCACCTTTTTCTCCATGTATTAGGTTAGGTTAAGATTACGTTTACAATTAACTTTA
GAATGTAGCTACAGGCTTTAGATAAGAATTATAGCTACTATATTAGTAATTAAAATAATT
TGTTTGGATAAACGTATGTTCGTGAAACATAATGTAGTTGAGGTCGGATTTTTTTATAAA
TTAAAAACATGGATATTTGTGACTGAATTCAAAGGTCCAAAGGGATAATGAGCTCATCAG
GCCGACAAAAAACTGTATCTTGACATAAAAGTAAAATAAATGTATTTTGTAAGTTTTCTA
GAAATTAAATGATTGACAGTGGGTATTAATTTATTTTTCTATACTTTAAATAAAATATAG
CTTTTGTTTACTAAATTATGTTTTTACTGGCAACACATACAATCAATTTGAATAAAATTT
TAAATGATTTCAAAATAGTTTGCTGAACTCATACTCGCTGTATCTACGCTAAACTCTCGT
ATCATAAAGAGCCGCTCCCGAACAAAATCAACGTCATAGACTAATGGATAAATAAATTGA
TGATTAATTATAAACTGATCAACGAGGTACAAATTCAACTCAGTCTCCTAAAGTTCGCTT
TCTCGTTTTGTTTTAATTTATATCTTCTCTTCTGTATCTTTCAACAACAGTCGTAAAATG
TAAAGCATGTGTTTACG
(2357 bp)

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