SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoEE_comp69947_c0_seq1
Scaffold_idBomo_Chr25
NCBI non-redundant
(nr)		PREDICTED:_pre-mRNA-processing_factor_39_isoform_X1_[Amyelois_transitella]
Ontology
GO:0000243 C commitment complex
GO:0000395 P mRNA 5'-splice site recognition
GO:0005634 C nucleus
GO:0005685 C U1 snRNP
GO:0006396 P RNA processing
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0030627 F pre-mRNA 5'-splice site binding
GO:0071004 C U2-type prespliceosome
Transcript
Level		FPKM:4.46 TPM:7.78
ORF EntryO_BomoEE20082_complete:A_BomoEE_comp69947_c0_seq1
Sequence
(Nucleotide)
TAATACCATAGATAATACACTTATGTTCAAAAGAGAAGCTAAAAGCTCAAAAAGCGATAA
ACTAAAGCAAATTGCGTCCAAATACGAAATAAAACGTAGCGACTAAATACTTTTCCAACT
CAAACTACTACTATAGCTGTTTCGCTTAGATTGTAGTGTTTGATCGATATATCTCGTTCT
ACCAGATTTCTAAACTTGAAACATGGAAGATGAAACAAGCTCCGATAATCAGAAAGGATC
TGAAAATCCCATGGATACAGACGAAGGTCCTTTGATAAATGAGAACTCCAACGGACTTTC
TCATTTGTTAACAGAGGGCGAATTTAATAGTGTCGATGCTGCTGTTGATGAGTCGTCGAC
ATCTAATCAATGTTTCTTGAACGCCGTGGAATTATCAGCTGGAAGCGCTGGTGACTACCT
CGAAAACAACGGCCCTCGCTTCAGTACAGATTCTTTTGACATTGGTGATAATGCTGTAAC
TTTTCCCAATGATTCTCTAAATAGCGCATTGACTGAAGATAATTCTATTCAAAGTGACTC
TGCATCCCACAAAGCAGTTTTAGACACAGACAGTAGGCAGTCTGAAAGTCAACATGCAAC
AGATTCCAATGTAGGAGAGATAAATGAAAACTCTGGCAATGACTCTAACTTCGCCACTGA
GCATGTAAATTTAAATGTGGATAAATCAGAGCAATTGGAAATTGTTGAGCCATGTAGCAG
TCCAGTAAAAGATCCAGTGATTAAGCAGGATGAAGGCAAAGAGTTTAAAAACCAAAGAGA
AGTAGATGATATCAAAGAACAATCACAAGACTCAGCAAGTAAGATTGGTGGTGCTGAAGA
AACAGAAGTAGTATCAGAGGATGAACTTCCTGAAGTGCAAAAGCCGAGCATCAAAGATGC
TGAGAATGTATCTGATGATGAGTTGCCGGGGCCGAAACCTGCAGAACTGCCTGCTGATAC
AGAGGTTGTATCAGAAGATGAGCTACCTGCATCCAAGAAAGAGTCTAGAAAACGAAAACC
AGATGAAGAGAGAAGTAATTATGATCCAGGATCACCAACATCAGAAGGTGAATCTTCCAC
AAAAAAACAAGCTATTACCAAGAACGGCGAAAGCAAGCCCATACCTGCCGAAAAGAGACC
TTCAGTTGATGAAAAACCTAAAAAGAAAGTTTTACCGGAATTGGAAAAGTACTGGAAAGT
TGTGAATGATGATCCGACTGACTTCACTGGGTGGACCTACCTATTACAATATGTCGATCA
AGAGAGCGATGTTGAAGCTGCACGTGAAGCCTATGACGCCTTTTTATCCCACTATCCTTA
TTGCTATGGATATTGGAGAAAGTTTGCAGATTATGAAAAACGTAAAGGAAGTAAAAAGAA
GTGCTTAGAGTGCAACGAGGTCTACGATGTTCGTATACGAAAGACGTCAGGTCACACCGG
AGAGTTGTATAACCGTCACATAGATATTGTTTTAATTATACTTACGATAAGGTGTATTGT
TTGTATTCTAGTGCTTAAGTTTAATACAACTTGTACATGCATGATGTATTGTAATACATA
CTTTATTGTATATATAACTAAGTACATAATGATTTATGGATAATTAAGATGAAACTAATC
CATGAAAGCACACTAGCGTGGATCACAGCGGTTCTCCATATTTAGCCATTTCGAAGATCA
CGGCGAAGACAGCGAGCCCGGCAGCGTCCATTACGAACAGGTTTTGGAAAGGGGACTTAA
AGCTATACCTTTATCCGTAGACCTCTGGATACATTACCTCAATCATATAAAAGCGACTAA
AACCGAAGACCATGCGTACATCAGATCTCAGTATGAACGAGCCATAGATGCATGCGGACT
AGAATTTCGCTCGGATCGTCTTTGGGAGTCTTACATCAAATGGGAAGCGGAAAATGGTTC
CGCTCTCAATGTCACGAATATCTACGATCGTCTTTTGGCAACACCCACCTTAGGGTACAC
GTCACACTTCGACAATTTCCAGGAGCACGTGATGTCGGAGCCGGTGACCGGCGTGGTGAG
CCACGCGGAGCTGGTGCGGCTGCGGGGCGAGGTGCGGGACGCGGCCGGCGCGCAGCCCAG
CCTCGACCTGCCGCCCGGGGAGGACGAGCCCGTCGACCATGTCGCATCCGATGAAGAGGC
GCAAGCCATCAAGGAACGGATTGTTGCAGCTCGAAGAAAAATTCATAAAACGACCGGCGA
AGAAGTAACTGCGAGGTGGACTTTCGAAGAAGGAATCAAGCGGCCTTATTTCCACGTGAA
GCCCCTGGAACGTTGCCAGCTAAAGAACTGGAAGGCGTACCTCGAATGGGAGAAGCACCA
CGGTTCGTTCAAGCGAGCCCTCGTGCTCCACGAGAGATGCCTCATTGCATGTGCCTTATA
TGAAGAATTCTGGATGAAGCTTATAAAGTTTCTGGAAGAACGTGCTGAACAAGATCCTGA
AGTGATAGCAATAGAACGGGAAGTACTAGAGCGAGCCTGCACAGTGCATCACCTCGACAA
GCCAGAGCTCCACCTACACTGGGCACACTTCGAAGAGGTGCAGGGCAATACACTGAAAGC
TGCCGAGATACTTGATCGTATAGAGAAAACCTGTCCCAATCTCGTACAAATACAGTACAG
GCGAGTGAACCTCGAGCGACGACGCGGCGACTACGAGAAGTGCTCTCAGCTATACGAAAC
GTACATCAGCACTTCGAAGAACAAGTCGCTGGCGTCTGCGCTCGCCATCAAGTACGCGCG
GTTCCTGCAGCACGTGCGCCGCCAGCCCGCCGCCGCCCGCGCCGCGCTCGACGACGCCGT
CGCCAAGGACCCGCTCAACCCGCGCCTGCACCTGCAGAGACTTGACCTCGCCATCAACAC
TCCCGGCGTCACCTACGAAGAGTTGGATGAGCTGGCACAGTCGTACTCGAGACAGGAGGG
CGCGGACACGGAGGTGAGCGCGCACATGGCGTGGCGCCGCCGCGAGCTCGCGGAGGAGCT
GGGCAGCGCCGCGCACGCCCGCGCCGCACACGCGCACGCGCGCGCTCTCGCCAAACATCT
CCGCAAGCGCGCCCGCAAAGACAAGCACGACCCGCCGCCGCCGCCAGCAGTAACTGATTC
TAAGAAAAAAGAGAGTACGGCAACCGCCAATTCTGTTCCGACGACGAATGCGAATTACTA
CGCGCCGACGACAAACACGCAGTCCTACGACCAGTCGTACACGCAGTCCTACCAGCCGAC
CTGGGGCTACCAGCAGCCCCCCGGGCCCTACCAACACCACCCCCACGCCTGGCCGCAGTA
TCCCAACTACTATTAGTAATTTGAAGAACATTCGTGATGGACGTACGAATCAGTACATAC
TTTTGATTTCAGTCACCTTTTTCTCCATGTATTAGGTTAGGTTAAGATTACGTTTACAAT
TAACTTTAGAATGTAGCTACAGGCTTTAGATAAGAATTATAGCTACTATATTAGTAATTA
AAATAATTTGTTTGGATAAACGTATGTTCGTGAAACATAATGTAGTTGAGGTCGGATTTT
TTTATAAATTAAAAACATGGATATTTGTGACTGAATTCAAAGGTCCAAAGGGATAATGAG
CTCATCAGGCCGACAAAAAACTGTATCTTGACATAAAAGTAAAATAAATGTATTTTGTAA
GTTTTCTAGAAATTAAATGATTGACAGTGGGTATTAATTTATTTTTCTATACTTTAAATA
AAATATAGCTTTTGTTTACTAAATTATGTTTTTACTGGCAACACATACAATCAATTTGAA
TAAAATTTTAAATGATTTCAAAATAGTTTGCTGAACTCATACTCGCTGTATCTACGCTAA
ACTCTCGTATCATAAAGAGCCGCTCCCGAACAAAATCAACGTCATAGACTAATGGATAAA
TAAATTGATGATTAATTATAAACTGATCAACGAGGTACAAATTCAACTCAGTCTCCTAAA
GTTCGCTTTCTCGTTTTGTTTTAATTTATATCTTCTCTTCTGTATCTTTCAACAACAGTC
GTAAAATGTAAAGCATGTGTTTACG
(4045 bp)

- SilkBase 1999-2023 -