SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoEE_comp69926_c0_seq3
Scaffold_idBomo_Chr11
NCBI non-redundant
(nr)		PREDICTED:_LOW_QUALITY_PROTEIN:_DNA_excision_repair_protein_haywire_[Bombyx_mori]
Ontology
GO:0000166 F nucleotide binding
GO:0000381 P regulation of alternative mRNA splicing, via spliceosome
GO:0000990 F obsolete transcription factor activity, core RNA polymerase binding
GO:0001111 P promoter clearance from RNA polymerase II promoter
GO:0001113 P transcription open complex formation at RNA polymerase II promoter
GO:0003677 F DNA binding
GO:0004003 F DNA helicase activity
GO:0004386 F helicase activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005675 C transcription factor TFIIH holo complex
GO:0006281 P DNA repair
GO:0006289 P nucleotide-excision repair
GO:0006366 P transcription by RNA polymerase II
GO:0006367 P transcription initiation from RNA polymerase II promoter
GO:0006974 P cellular response to DNA damage stimulus
GO:0009411 P response to UV
GO:0016787 F hydrolase activity
GO:0032508 P DNA duplex unwinding
GO:0043140 F 3'-5' DNA helicase activity
GO:1903506 P regulation of nucleic acid-templated transcription
Transcript
Level		FPKM:9.70 TPM:16.92
ORF EntryO_BomoEE20039_complete:A_BomoEE_comp69926_c0_seq3
Sequence
(Nucleotide)
AGTTACCAGGTCATAAAATCCCTAAAGAAAAGCATGTTTTGGATTTTTAACATAGAACAC
TTAGGATTTTTTAAAATATAATCTGATGTTTTCAAAGTAAATTTTTAATAGGGTACTTTC
AAAGATAGGTATTTAATTAATTGAAATGTTTGGATGGGTAACCTTATTAACCTTGCATAA
GCTAAGGAACTTTAACAACAAATACATAGTGCGTCAAACATTCACAGAAAAATTGAACAT
ATAGTTGATTATAAAACAGAATAATAGTACATACAAATACAGTTAATTGTGATTGGCGAG
AAAAATAAATCTATTCTACCAAAATGGGGCCCCCGAAGAAATTCAAGAGATATGACTCAA
AAGGAGGAAGTGATAGATCAAGTAAAAAGAAAAAAGTAGATGAGGATATAACAATAGATC
TTGTAGATGATGATAATGCAGAAAACGATGGGGTCCCTGTTGCTGCCATGCAAGATGCTG
AGAAGAATGATCAAGTACCTGAAGACGAATTTGGTGCTAAAGATTATAGAAGTCAAATGC
CGCTTAAACCAGACAACGCCAGTCGTCCTTTATGGGTGGCACCCAATGGACATATTTTCT
TGGAAGCATTTTCTCCAGTTTACAAACATGCTCATGATTTTTTGATTGCTATAGCTGAAC
CAGTTTGCAGACCCCAACACATACATGAATACAAATTGACAGCGTACAGTTTGTACGCGG
CAGTTTCGGTGGGCCTACAGACCAATGACATTATTGAGTACCTGCAGAGACTGAGCAAGT
GTGCTGTACCGGCCGGCATCGTAGAGTTCATTAAACTATGTACCCTCTCTTATGGTAAAG
TGAAGCTGGTGTTAAAACATAACAGGTATCTAGTCGAGAGTAAGCACGTGGAGGTACTGC
AGAAGCTATTGAAAGATCCAGTGATTCAACAGTGCAGGCTGCGACGCGACGGCGACGAGG
ATCTGCTGTCCAACGACCTGCCCGCCAAGCCAGCCACGTCCCTCGCCAAACCAGGTGAAG
AAAAACCACCGGCGGCGAACGGCGCTGTGCCCGACGACATCAGTCAGTTCTATCAGCAAC
TAGATAAGGATGACGACGAGGAGGAGACCTCTGGTGTTACTGCCAACGCAGCTGTTGCCT
TTGAAGTGGATCCTGACAAAATCGAAGTAATACAAAAACGTTGTATCGAGTTGGAGCATC
CATTGCTGGCTGAGTACGACTTCCGGAACGACTCCATCAATCCGGACATCAACATTGATC
TTAAACCAACTGCCGTTTTGCGACCTTATCAAGAGAAGAGCTTGAGGAAAATGTTCGGCA
ACGGCAGGGCGAGGTCAGGCGTGATAGTGTTGCCGTGCGGCGCCGGCAAGTCGCTGGTGG
GCGTGACGGCGGTGTGCACGGTGCGCAAGCGCGCCCTCGTGCTCTGCAACTCCGGCGTCT
CCGTGGAACAGTGGAAGCAACAGTTCAAGTGCTGGTCCACGGCGGACGACAGCATGATCT
GCAGGTTCACATCAGAAGCCAAGGACAAGCCGATGGGAGCGGGTATCCTCGTAACGACGT
ATTCCATGATAACTCACGGACAGAGACGCTCGTGGGAGGCCGAACAGACGATGAAGTGGC
TCCAGGCCCAGGAGTGGGGCCTGGTCGTGCTCGACGAAGTGCACACGATACCTGCCAAAA
TGTTCCGCAGGGTGCTCACCATCGTGCACTCGCACGCCAAACTGGGTTTGACGGCGACCC
TGCTGCGAGAGGACGACAAGATCGCGGACCTGAACTTCCTGATAGGCCCGAAGCTGTACG
AGGCGAACTGGCTCGAGCTGCAGGCGGCCGGCTACATCGCGCGCGTGCAGTGCGCCGAGG
TGTGGTGCCCCATGACGCCAGAGTTCTACAGGGAATACCTAGTGCAGAAAATAAACAAGA
AAATGTTGTTGTACGTAATGAACCCGTCGAAGTTCCGCGCGTGCCAGTACCTGGTGCGCT
ACCACGAGCGGCGCGGCGACAAGACCATCGTGTTCTCCGACAACGTGTTCGCGCTCAGGC
ACTACGCCGTCAAGATGAACAAGCCATACATCTACGGGCCGACGTCCCAGAGCGAGCGAA
TACAGATCCTCCAGAATTTCAAGTTCAACCCTAAAGTGAATACGATATTCGTGAGTAAAG
TCGCCGACACCAGCTTCGATCTGCCCGAAGCGAACGTGCTTATACAGATCTCTTCGCACG
GAGGCTCCAGGCGACAAGAGGCACAGAGATTAGGTCGTATTTTAAGAGCAAAGAAAGGCG
CTTTGGCCGAAGAATATAATGCCTTTTTCTACACTCTAGTATCACAAGACACCTTGGAGA
TGGCTTACAGTAGAAAAAGACAAAGATTTCTTGTTAATCAGGGTTACAGTTATAAGGTTA
TAACAGAACTAAAAGGTATGGATCAAGAGCCCGATATGCTGTATGGCACCCGCGAGGAAC
AAGGCACTTTACTCTCACAGGTGCTGGCGGCCTCTGAGACAGAGTGCGAGGAGGAGCGGG
AGGGCGCGGTGGGGGGCGTGTCGCGGCGGGGGGGCGCGCTGTCGTCGCTGGCGGGCGCGG
ACGACGCGCTCTACGTGGAGCGCCGCGGCAACCAACACAACAAACATCCTCTCTTCAAGA
AGTTCCGATATTAGACCCTCTCGGTACTTTATCTGTGCCCTCACCTCTCGCCTTCTTTAA
AGTAAAAATGTGGAAGGCGGCGTTCCGGAGTGGGCTATAATAGAACTGCAGGGACTCGTG
CAGATGAAAAACGAGAATCCAACGTGCGCCACCGTCGTGGGCGACCTCCATTACTATAAC
AGAAACCGACATCCCGTGTTAGTGCTCGGTCATCACGTCCTGAACGGCAAGGAAGTAAAG
CTCGAGCAACCCATGGCCGTCATACAAAAAACGAACTTGGGAGATGAAATTAAGTATGAA
GTGAAGGCTGTTGTTAAGAAGAAGTTATTGTTCAAATCTAGACCTAAACCTATTATTTGT
AATGTATCTGAAAATGTTTGAATAAAAATT
(3030 bp)

- SilkBase 1999-2023 -