SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoEE_comp69587_c0_seq3
Scaffold_idBomo_Chr6
NCBI non-redundant
(nr)		PREDICTED:_DNA_ligase_3_isoform_X2_[Bombyx_mori]
Ontology
GO:0000166 F nucleotide binding
GO:0000794 C condensed nuclear chromosome
GO:0000795 C synaptonemal complex
GO:0003677 F DNA binding
GO:0003909 F DNA ligase activity
GO:0003910 F DNA ligase (ATP) activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005739 C mitochondrion
GO:0006260 P DNA replication
GO:0006266 P DNA ligation
GO:0006273 P lagging strand elongation
GO:0006281 P DNA repair
GO:0006288 P base-excision repair, DNA ligation
GO:0006302 P double-strand break repair
GO:0006303 P double-strand break repair via nonhomologous end joining
GO:0006310 P DNA recombination
GO:0006974 P cellular response to DNA damage stimulus
GO:0007005 P mitochondrion organization
GO:0007049 P cell cycle
GO:0008270 F zinc ion binding
GO:0016874 F ligase activity
GO:0043504 P mitochondrial DNA repair
GO:0045910 P negative regulation of DNA recombination
GO:0046872 F metal ion binding
GO:0051103 P DNA ligation involved in DNA repair
GO:0051301 P cell division
GO:0070421 C DNA ligase III-XRCC1 complex
GO:0071897 P DNA biosynthetic process
GO:0090298 P negative regulation of mitochondrial DNA replication
GO:0097681 P double-strand break repair via alternative nonhomologous end joining
Transcript
Level		FPKM:6.18 TPM:10.77
ORF EntryO_BomoEE18963_complete:A_BomoEE_comp69587_c0_seq3
Sequence
(Nucleotide)
GGTTCGACGAGAACGATGACCGGACTAATAATGGCTTCGCTGTGACACTCCTGAAGTCTA
CGTGCGTCAGAGACCTTTTAACTTTGGGCCGTATGCTCGTAATAAAAATTACTACGATAA
AAAACAACGATGAACGAAGCGAGCACTATGAATATAATTTATTTCCAAATATAAAATTAA
CAGATCATTGTTAAAGGCGCAACACACAATTATAATAACAATCAATGAAATTTGATAAAA
AATAATACATTCTGAAAGATCACTTAATATAATTTCTGAGGTATAACCGTTACCGCATAT
TTAGTAGTATCACATAGTGCAACCTCATTTATACACCTAATTAACCAATTTTTCGTAACA
TGCCTTACGCCTTGACGCAATTCTTCTTTTAACCTTTGCATTTCCTTGTATGTAATACAA
TTGTTATTATGTACGACAAAATCAACGTTCGCAGATCGCATCGATTTCACAAGAACACCT
CCGTACGCAATCCAATGCCTAACAAAATGTTTTCTTTCGTCCTCCGAAAAAGATATTAAG
TCGGGATATAAACTTAATATTTTATCTTTGAACGCGTCCGGCAAAGGGTTGTCGGGGTAT
AATTTATTTCCACTAACTGTTGTTTTGTCTTTTCTCTTTACTTTTGCAGGCGTCTCATTT
AACTCTGCAATAGTTTCTTGAGAACTGTCTAAATCTCTTTTCTTTCTTTTCATTTCTCTT
TTGACATCCGTTTCAGTCTCCTCCGACTTCTTTGTTTCTTCGGTGTTCTTTTTCTTATTC
TTATTCGTTTCCTCATAAGATTCAGAGAGGGTTCCTTCCGAAATATTTAAATGTCTTTTC
CTTCTTTTGATTTCCCTTTTAGAATCAGTCTCATCGTAACTCAAATCCGAATTAGAACCA
TTCAGTTTATTTTTGTTCGACGCTTTTGTTTCTAACTTTACTAGGGGACTATCTGGAGAT
TTCTTTGAAGGACTCTGTTTTGGTTCTTTCTTTAAGAAATTGTCCAATTTATTTTGTTTC
TTCGGACTAGCCTTCGTTTTTTTGTTCGTTGTTTCAATACCAGAAGCTGAAGCAGCCAAT
TTGTTTAATAATGAGACGTCACTGGTTTCTTTCGAAGTTTTGTATAAATGTTTCAGTTCA
TCCAAGTTCGTGGCGGACTGCCAGTCTTTGTCTGTTCGAATCCTTGTGACTCTTGGGAAC
CTCACTGATATCCCATCGGCTGTGTGTTGGTTTGCTTTTGTTAACTCGGTACCTGTAATT
TCCCAAACTGGTTGCTTCTTAGGATCTAAAGCGACGAAATCCGGCACCATACCCTTTTTA
CAGTCTAACCATGACGGGACTTTATTACTGTCTTGAGAAATCTTCAACATTAAAGGTCCT
AACTCCTTTTGAAGTCTCTCGAGCGTGCTATCATCATGTCCCGTATGCACTTTGGTTACA
GTTACCCACTTATTTTTGTACTTATCCAAACAGCCCATCAAGAATACTGACATCATTCCG
CCTTTCTTACCTGTACCAAACCAAGCTCCAAGTACAACAAGATCTGCAGTGTCAGCCATT
GCTCCATCAAAGAGATAATCTTTCTTCACTTTCAACCAATGACGTTTTCCCGGCTCATAT
ATAGATTCACGGTCTTTTAGTACCAGTCCTTCCAGACCCAGTTGTAGAACCTCAGCAATC
ATCTTAGCTAAATCTGATGGCTTCTCAATAAACTGTAATTCAGATAACATGACATGATTT
TTTACTTCAATCATATTTTCCTCAAGAAACTTCTTTCTTTTCCAAATTGGCTCATTCATC
AATACTTCTCCATTATAATAGAGACAATCAAATATAAACAAACATACTTCCGCATCTTTA
AATTCAGATTGTTTGTGTACGCCCAATGTACCAAATGGTAAGGGCTTCCCAGTACACACA
TCCACCATCAAAACTTCAGCATCTAATATCATATCTTCTCCTTTAGGAAAAGCTTTAGGC
AAATGTTCCTTAAATAAGCTTACTTTATGTGCCATCACAGGTTTTAATGCTCTAGAAAAG
TATTTAAATTCTGTACCTTTTTTATGTATCTGAACTCTCTCCCCATCATATTTAATTTCA
GAGTACATACCGTTTGGACATTTTTTCATCGCCATTTCAATTGATTTGCATGCTTCAGCT
AACATAGGCAAAACTGGAGTCATTAATGTCAGTTTTGCTGAAACAGCTTTGTGGCTCACA
CCCTTGTCATTTGAACTATTATTCTTTGACAAAACCCGATCAAGAACCATATTAAGGTCT
CTTGACGTCTGAAAAACATTATATGAATCGGGATGCACTCCTTCCAAGATATGCTTTGGT
CCAGCATTAATTCTTAGATCTCCTTTTATTAACCGTATCAACATTTTCATATCATCTAAT
GTACATTTTTTCACAATTTTTTTGAAGTGGTAAATTTGTTCTTCTTCTTTTGTTAATGTA
GATAAGTTTTCTAGGAAATCTTCTATGTTGTGGATCGTAAGTGAACTAAAGGAAGCAGGT
TGCACTACCTTTGATGTTGAGAAAAATCTCTGTATCGTATTTGCCACATCTCCCTGTTCT
AGATCCGTTAACATATCATCGTGATCAATATTGAATATTTTTGAGAAGAGCTTAACTAAT
TGTTTGCTCTTTAAATTATAAACTCTTTTGGTTACTTGAGGTAATAGTAATTTACACCAC
AAACCAAGATCTCCTTTAAAATTATCTTTCTCTATTCCTTTCGTAAAAAAAGAATTAACA
GCAGCAGTCTTTTCAGTATATGCATCGACTTTTGCAATTCTTTTACATAATTCAATAAAA
GTACTAAATTTATTATCTTCTACAATGTTACCACTATCAGTAGTGTCTGGCTCACTTTTA
ACACTATTTTTCTTTATGGAGCCTAAAGATTTGTTTTCAATTAGTTTCGCTGTGTATTTC
CCACTGTGTTTTTCTGCGTACAATTTTTCAGTTTCGTTTAATTTTTTTAGTATCAATTCT
TGATCTTCCTTACTAATATTGTCCCAGTTACCAATGTCGTTGATGGATTCAACTCGTTTA
GTATTAGGGCGTTGCTTTAACAATACGTCAGTAAAACAATGAACATGATACCAAGATTTC
ATGGATTGATTATCGCCATACGGGCTCGGTACAAGTTTGGCCATACGTAGTTCACCACTA
GGACAGTTGCCTTTACATAATTTACATGCTGCCCTACCACCTTTGGCTCGATCTACGTAA
AACGGTGTTGAATCGGACATTGCGATTATGAATGCCAATGAGGCAATGACACACTTAAAA
ATATATGTTGAATACTCAAAACATCTGATACGAGACCTGTTGTGACAGGTTTTGAAGCAT
TTTTTTCAAGAAGCACTGTTTAATATTAAATAACTTTTATTCTCTATCTCCTTATATTTA
ACCACTTTACATAACTTGCGCGAAGTACGGATTTTTTTATAAAAATAACATAAATTACGG
CCTGAAGTGTGCAATAACAACTTTAATTTTAAAAACAGTTTTCCTCGTGTTTTCTAGTTT
TCAATACACACACATCAAAATTCAAAACATAATATAAAGACAACTGACATTGTCACATTA
TTGACATTTGACGTTATAGTCAGCACAGCCACGCATGCGCGTCTCGTGGG
(3650 bp)

- SilkBase 1999-2023 -