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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoEE_comp68873_c0_seq1
Scaffold_idBomo_Chr8
NCBI non-redundant
(nr)		PREDICTED:_DNA_repair_protein_RAD50_[Bombyx_mori]
Ontology
GO:0000014 F single-stranded DNA endodeoxyribonuclease activity
GO:0000019 P regulation of mitotic recombination
GO:0000166 F nucleotide binding
GO:0000722 P telomere maintenance via recombination
GO:0000723 P telomere maintenance
GO:0000724 P double-strand break repair via homologous recombination
GO:0000781 C chromosome, telomeric region
GO:0000784 C chromosome, telomeric region
GO:0000790 C chromatin
GO:0000794 C condensed nuclear chromosome
GO:0003677 F DNA binding
GO:0003691 F double-stranded telomeric DNA binding
GO:0004003 F DNA helicase activity
GO:0004017 F adenylate kinase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005694 C chromosome
GO:0006281 P DNA repair
GO:0006302 P double-strand break repair
GO:0006310 P DNA recombination
GO:0006974 P cellular response to DNA damage stimulus
GO:0007004 P telomere maintenance via telomerase
GO:0007049 P cell cycle
GO:0007131 P reciprocal meiotic recombination
GO:0007346 P regulation of mitotic cell cycle
GO:0008408 F 3'-5' exonuclease activity
GO:0016020 C membrane
GO:0016233 P telomere capping
GO:0016787 F hydrolase activity
GO:0016887 F ATP hydrolysis activity
GO:0030674 F protein-macromolecule adaptor activity
GO:0030870 C Mre11 complex
GO:0031860 P telomeric 3' overhang formation
GO:0031954 P positive regulation of protein autophosphorylation
GO:0032206 P positive regulation of telomere maintenance
GO:0032508 P DNA duplex unwinding
GO:0033674 P positive regulation of kinase activity
GO:0035861 C site of double-strand break
GO:0043047 F single-stranded telomeric DNA binding
GO:0045120 C pronucleus
GO:0046872 F metal ion binding
GO:0046939 P nucleotide phosphorylation
GO:0051276 P chromosome organization
GO:0051321 P meiotic cell cycle
GO:0051880 F G-quadruplex DNA binding
GO:0070192 P chromosome organization involved in meiotic cell cycle
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
GO:1904354 P negative regulation of telomere capping
Transcript
Level		FPKM:47.92 TPM:83.57
ORF EntryO_BomoEE17189_complete:A_BomoEE_comp68873_c0_seq1
Sequence
(Nucleotide)
CCGCACGGGTAGGTACCACCACCATGCCTATTTCTGCCGTAAATGTAATGCGTTTCGGTT
ACAAGGGTGGGTGCAACTGGTGCATTGTGTTGCAATGTCCGCAACCAAGCCATTAATTAA
ATTTAACAAAAATTTGGGAAACGATTTTTAGTTTATTTAATATACAAATACTCTATTTTT
GAAGGTCAAAAGTAACTGAACTTTGACAATGTTATGTCTGCGACTTAAAGCCTGACAGCG
TTCTACACAAATATAATTATAGATCATTGGACAAGCAGAATGCAGTACAGACAGAAAGCC
CGACAAAGCTAAAATAACGAGATATACTTTTAATAATTTAACTGTGAAATATTGAAAGAT
TCCTACTTCACTTTCAGCACAACTGGCACAAAAAAATCGTTATTTAATTATACATCGACT
TGAGACTTCTATGTAATACGTTGATACCTGAATATCAAAATAACGATTTCCCGATGCTTA
CGGGAGTAACTTCGAGATCAAATCAGAACGCTAGTTGAAACGGGTGAAGCTGAAGGTGGT
ATTTTGTAAATAAAAAATTATCTACACCACTTGTTTTCTGATGAAGTTTTGAATTAAGGC
GATACTTTAATTTAGCTTTGGGGCTATAATTTTTTTTGGGTCTGGTAGCACTGCTCGTAC
CCTTTCGCATTTCGGCCGCCTTTTTACTAAAACAGAAGTGAATGGCGCGCGTCCCGGCTT
TCTGATTAAGTTTGGCATGGGACTTTATTTGGTATTTTGAGTATAATTAAACTGTTTGTT
AAGGTTAGACCGTAAGAAAACCTAACGTACAATATGGCGGGAGTGAAATCGCTAGCAATT
AGAGGAATAAGAAGTTTTGGACCTGAAGATACCGACGAACAACGCATACTATTTGATTCT
CCATTAACGCTGATATTAGGGCAAAATGGATGTGGTAAAACAACAATAATTGAATGCTTA
AGATATGCAATCACTGGTCAAATGCCGCCTGGTAGCAGGAACGAATGCTTTGTTCATGAT
GCAAAAGTGAATAGATCAACAGAAGTACTCGGTCAAGTGAAATTAAAGATTGTCAATGCA
AAAGACAAACAGTTGGAGGTGACAAGGTCCATGAAGGTGACTGCCTTAGCCAAGAAAAAG
ACAAAATTTCAAACCCTGGATTCTTTTCTTTCTACTGTTGATGAAAGTGGCAAAACAAAA
GATGTATCTTCAAGATGTGCCGATTTGGACATCCTTATGCATGAGGAACTTGGGGTTTCA
AAAGCCATACTAAATTCTGTCGTATTTTGCCACCAAGAAGATTCAAGCTGGCCACTCGAT
GAAGGAAAAAAGGTTAAGGAAAGATTTGATGAAATTTTTGATGCTGATAAATACAGTGAT
TGCTTAGATCGTTTAAAAAAAATAAGAAAGGATTATGCACAGAACTTAAAGTTGCTTGAA
CAAGAAGTGGCTCATTTAACAGAGAAGAAACAAGATTTAGACAAGAAAAAACTTAATGTA
GTTAATACAGAGACAAATATCTCCCAAACTGAAATAAAAGTAACAGAACTAACACAAGAA
TTAAAACCAGTTAATGAAAAATTAAGTGCTATCAAAACACTCGAGAACAACTTACTGAGT
TATGAAACCAAACGAGAAAAAATTAAGATGAGACTAGAGCAAGCTCGAATAGAAGAGGAG
AAACTAAAAAACAACATCAAGACTTTGTTTGAAGGAGCACTTGATGAATTGGAACAAAAT
ATAAAAAACTACGCAACTACAGTTAAAGCTAAACAAAAAGAGCTTGAAGATTCATACAAA
AAGAACACATCATTCAACAAGGAAGAAGAAAAAATTGCCAATGAGAAGTCTTCAAACGAG
ATAGAGTACAACAAATTTATATTATTGGAAAGTCAAAATCAAGAGAAGATTGATAAGAGA
AATGAACAGATTGTCGAAACTGCAAAAATTGCTGAAATTGAAAACATCACTGAAGTTCAA
ACAAACGAGGAAGCAGAGAATGCCACAAAAACTATTTTGGAAAAAGTAGAAAGTCTAAAA
AGTGACCATAAAGTGCAAAAATCACAAGCTGATGAAGAAGAAAAGAAAGCGCAGGGATTC
GTTGATGAATGTCGTGTAGCCTTGTCTGGTCATACACAAAAAATCAGTAGCAAAGAAGGA
GAGATAAATAAGAAGAAAAAAGAGATTACTAAAATAGAAAAAGATATAACATCAGCAAAT
CAATCAAAAGATAAACTAGAATTGATTGAAAAGAAGTTGCTTGCAGTTGAAGAAGAACAC
AAACAAGCTGAAAACGAATTAAACATTGAAGAATGTCAGCAAGAAATCAACGAAGATGAG
AAAGCTGTGGAACAATATGAACAAGAAATGGATGAGCTTAGTCAAAAGATAACCAAGCTT
CAAAAGCAAACTGCTAAATTGAAAGAAAAGGAAATGATCGAAGAGAATCTCAAAACTAAA
GAAAAACAGTTAATTGTTCTTAAAAACAAACACAAGACGGCCCTGATGGAACTGCTTGGT
AATGTACCCGAAAAAGACTTTGCTGTGACAATCAACAAATTTGAGTGTGAAGTGCGAAAT
GAAGTTGAAACACTGAAGAAAAAATTGAAAGAAAAACAGATAGAGATAACGACTTTGGAA
GCGGAGCGAAAACATATTCGTGAATCTTTAAACGAACGACGCAGTGAACTGACTAAAGCC
GAAGACAAAATATACAAGGCATGCGGAACCCAGCCCTATGATGTTACGTTATCTAAATAT
ACAACCACAGTAGAAAAACTTCAGGATGAACAAAATGTTTTACAATCTTCAATGTTCATC
ATAAACAAATATAAAGGGCAACTTAAAGATAACAGTTGCTGTCCATTATGCAATCGCGGC
TTTGAAAACGAGTCTGAGGTAACCGACTTAGTAACACAACTAACAACTCAAGTTATGAAT
GTGCCGGGTAAACTTGAAAAAGTTACTGAAGATCTCCAAAGAGCGTCAGCTAAAAAAGAT
GAAATACTCAGTATGAAGTCTTTAAATGAGAAAATAACCACTCTTAAAGATACGGAAATC
CCCCAGCTGGAGAAACGAATCGTTGATGTTGATACTCAAATTAAGACTCTAAATGAAACT
GTGGAAGAAATAACCATGTCTCTGATTGAACCAGAGCAAAAGATGACCACTGCTAAGCAA
ATACACGGGGATATGCCGATGCTTGACCGCTATATACAAGAAATTAAAACGGTCACCAAA
AAGTTTGAGGCAGTAAAAGAACAATGTGGCGATGTTGATTCAGAAATGACGTTGGATGTT
GCGACTGCCAAGCAAGTGGATTTTAAGCAAAAAATTAGCACCCTAAGGAATCGCGTAAAA
ACCACACAGAAGAAACTAAATGCACACAACAAGAAACTGCAAACTTTATATGAAAAAAAA
ACTAAAGCTAAGGAAGAATTGTTAAATACACAGAAAAAGGTTCAAGACATCGTAAATCTC
GAGGAATCTAAAAAGCAACTGCAATCAGATTGTGAGAGACTAGAAACCGAACTAAAAGAA
CTGAAAGAAGCTATAACCCCACTGGAAGTCGCACTTAAAGAAAAAATCGAGGCTAAGACC
GAAGTAGTGAGAAGGAACAGAGATTTGATTGAGGCTGGAAGTGCCTATATTGCAAAAGTC
GAAGTAGCTTTCAATAAAGTAAAGTCTCTCGATGCTGAGATCCAACAGCATAAAAAAAAG
AATGTACCCCGTGAAATGGAGAAGATACAAGAAGCAAACGATAAATTAATGGAAAAACAA
AAACAAATCATGACTGACAGACAAGTGCTCACAAAAAAAATTGATACTCTTAAAGATGAA
ATTGCAAAGCAAGAGGTTTATAAACGTGATCTAGATGACAACTTGTGTTTGCGTAAAGCA
CAAACGGACATCACAAATTGGCAAAAACAAGATGATGAATTGAATGAAAAATTGAATGGT
ATTAACAAAGAAGAATTAAATGAAAAAGAATCATTAATCATTAAGCAAACGAAGTTGTTC
CAACAGAAGGCAGAGTGCACTGGAGCATTGAGTGAACTTAAGAAAAGTTTAAAAGGCTTC
AGGAATGAACTGGAAAAATCTTTATCTAAGGATATAGAAAAAAAATTTAGAGAAAAAATG
TATGAACTACATGTAACTAAAGCTATTGACAAAGATATAAGGGAATATGCTGTTGCTTTA
GATAAATGTCTTATGGAGTTTCATAGAGAGAAAATGGAAAATATCAACATGATTATCAGG
GAACTTTGGCGAAAGATATACAGAGGTAATGATATTGATTACATTGAAATCAAGACTGAA
GGCAACTTAACTGTAGAATCAGAACGACGCAAATATGACTACAGAGTAGTACAATCTAAA
AACGGTGTGGAAATCGACATGCGTGGAAGATGTAGTGCTGGTCAAAAAGTACTCGCTTGC
CTAATAATAAGGCTAGCACTTGCAGAGACATTCAGTTCCAGGTTTGGAATACTTGCTTTG
GATGAACCAACAACAAATTTGGATCAAGAAAACATTCACAGTTTGTGTGCAGCCCTTGGT
GAAATAGTCCAAGAGCGAATGATGCAAAAAAACTTTATGTTTATTATTATCACCCATGAC
AAAGAATTTATAGAGTCACTTGGGAACATTGATAAAGTTACACACTATTATGAGGTGTCT
CGAAATGACAATGGCAAATCTAGGGTCAAGAGGATTAGATTTATGTAGGTCTATTTTTTT
GTTTGAACCATTCCTTAAATACATACAAATTTTATTTTAACAATAAGTAAAAGGCGGTGC
CTTAGGAAGAACTTTAAAATATCATTGTCATTAAAATTATATTATAGGTTATGTAATGAT
TAAAACTTTTTTCTAAAAGTAAAAAAAAAA
(4890 bp)

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