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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoEE_comp68747_c0_seq3
Scaffold_idBomo_Chr25
NCBI non-redundant
(nr)		hypothetical_protein_KGM_00713_[Danaus_plexippus]
Ontology
GO:0000398 P mRNA splicing, via spliceosome
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005684 C U2-type spliceosomal complex
GO:0005686 C U2 snRNP
GO:0005689 C U12-type spliceosomal complex
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0016032 P viral process
GO:0044822 F RNA binding
GO:0071011 C precatalytic spliceosome
GO:0071013 C catalytic step 2 spliceosome
Transcript
Level		FPKM:17.92 TPM:31.26
ORF EntryO_BomoEE16937_complete:A_BomoEE_comp68747_c0_seq3
Sequence
(Nucleotide)
AGCTCGTCCACCCATCTAAGCAATTAAAAGTAAAAAAAAAAACTTATGAAAATTAAGACC
AATTCAGGTTTTAAGGCATCGCTTTTCGCTTCTATTGTCTGCACATCGATAGCGTATACA
TAGTCCATTGAAATGTTACAGGAGCTTTGCATTTTTTATAGGACGCAATTTTATGTTTGG
GACATGTGTGGGGGGTCAATAGAAGCTTAAGAAGTTTGTGGGGTCGCCACCCTTGTCCCC
CAGCCGCCATCTTGGGAAAAGGGGTGATAAACTTTTTTCGCGATATCTCGGAAACTATGC
GTCTTACAAAAAATTGTAGTCATTATTTGTAGCAAATTGTTTTGCCTACAAATATGTTTA
TATAACTTTTTGCCCTAAATTAAAAATTAAAGAAGTTATAAGCAAAAAAGTGAGAACACA
TCCTCGAAAAATAAAATTACGTCCTCTAAAAAATGCAATATTCGTTCCTTAAATTGTAAC
ATTTCAATGGACTAACAGTACACTAATTGACGCATATAAAATACAATCGAATATTTAAGC
GGCACGTCATTACGACCACTAGTGTTCCGCTGAGATCATGTCAATCATAATAAATACTCT
TCAAGATAGTCTTCAAGTTTAGATTCACAAACCACATCACTTACGATCAGAGCCTTTCTA
AAACCAGACATTATCGATTTAGAAATAATGAATTAAATATTTAAATACTTAATGTAAAAA
AAAATATTTTTTTTCTATTTTCGGTTGATTTGTCAAAATCTGTATTTAAAAAGAGAGAGA
AAAACCCAAATTTCGTTTGTCACTTTGAAATATTATTTGAAACGCATAGTACACATCCCT
TTATTCACAATAATACTTAATACTAAATGTAATGATAAGTCTACAATCACTAGAACTTGA
ACTCCTTGTATTTCTTCGCATGTTTTGAGTCCGTGTTCTGTTGACGTTTCCTTTTGTTCT
TCTGCCTGGCCACGTGGTCCGCGAGCATGTCGGAGAGGTCCTCGTGGGTGTTGGGTCGCT
GGTCGCGCAGATGGCGCTCGTAGCGCGCCGCCACCGCCTCGGGCTCCAGCTCCAGCTCGG
AGGGGTCCAGCGTGACCTCCACGCCGCCCGCCGGGCCGTGACCCGTCGAGGTCGCGCCCG
CTCGCTTCACGGGGTTCGTTGCGTTAATGTCGTACACGTGCGTGGACGCCATCATCCCTG
ACGTCACCCCCACGCGGCGCTCCGGCAGTACTTGGTACAGAGCCGGAGTCTCTCCTCCGT
CAAGATCGGAGTCCAATTTCTTTTTCCTGAGTTCAATGCTGTCGGGAGTCTCGAGTCCGG
GCGGCACGGAGCTGAGTCCGAGCGGCGTGGCGAGTCCCTCCGCGGGAGTGCCGACCCCGC
CCATCTCTGCCTCGCCCTCCTCGCCCGATTCCTCCTCCTCCGACTCTTCTTCTGATTCAG
ACTCCAGTTCGCCCCACATTGTCCTGTCGATGTCCACGTCTTCGCCGTCATCTTGTCCAC
TCGTCTGATGTCCGAAGACATCTCCGTAGAGCGGTTTTCCCATTTCGTCGACGGGCGGTT
TGCCCCACCCCCCGGCGTGGTAGCCGAAGGCGCACCCCTCGGGTATGGGCGCGTTGAGGC
CGGGGATCTTGAGGTTCGGGTACGAGGGCGGCGGCCCGTACCGCTGCTGCGCGATCAACC
ACGGCGGTGGTACCTTCTGTGAGCCGGGCCCGACGGGCATACCGAGAGCAGTTCTCAGTT
CCTCGGACAGATCTCCGGGCTTCTTCTCGCGCAGACGAGTCTCGAACTCTTTGCCTTCGT
AGTACAGATCTCCGTGGATTGTCATACGCGGTTTTGTTTGCCATTTGAAAAAGGCATCAT
GCAATTTCTGGTAGTCAATATCGATCTTGCCCAATTTCGGTCTAGAACGTTCCCTCATCT
TCGCTTTAAGGGTTTTAGTCTCTTCTTTGTCCTGCAGCGATGCTCTCATTTCCATGATTC
CTGTCTTCTTTATAAAGTCCGGTAGATCGAAGGGAGGTTTTTCTATACCGCGTTTTCCTT
GCAAGTACTTCCTCTTGTAACACCAATGTCTGGGTACTTGGACAGTGTTCCTGTGTGCCT
TTAGCTGGACAAGTAGTTTGGGATCCCGCGCGGTCACGTCGTACATTTCCACGACGTCGG
GTCGAGCCACTAGCTGCTTCAGTTCGGCCACTGACAAACGCGACAATTTTTTTAGTTTGC
GTTTTGATAGGCGCTCCTTTTCGTCGGCTGCGTTTTTCTCAGCTGCCTCATCATCCGCTG
CGAACTGGTCTTGCACTTTATCCTGATGTTTTGTTGGTTTTGGAGCATCCATACCCTCAT
CTTTGATCGTCTCTTCCTTTTTCTCCGAAATTTTAAATGCTTCCAGTATCCGATGGAACT
GACGGTACATTGGTTCCATTTCATGAAACTGTATGTTTTCTTGCACGTATTCAATATCTG
CTTCTTTTTCATTTTCTTTGTCACTGGATCTCTTTTCTTCTTGTGCGTTGTTCTTTGTCT
TAGACTCTTCATTGCGTTTCTGTTTAGCCAGCTTCTTTTTCTTTTTCTTTCTTTTGTTTT
TATTGGATTTGCTAGCTTGGGACTCTTGTTTGGAAATTACTGGTGGCATCGGTGGATCAG
GAATGTTTTCATCGTCTGACTGTTCATCCTCTTCCACGTCATACTCCGTACTGATCACTG
GAGCTGGCGGTGCTTCCATGTCTTTTTGCACATCTGTTTCTTTATCTTCTTCACTACCAA
GAGCTGCTTGTCTTTGGTCTTTGTAAGCAAGAGCTTCTTCCAGAGCCTTTGGGAGTACTA
CACCTCCAGCATTTCCCTGTTTATTTTTAAATTCTTCTGGTGTTTCAATCTTCATGGTCA
AGAGTGATGGCAGAGAAGAATGTTGGTCAGAGGATAAATCTTCTTCCCCATCTTCTTCTT
CTTCTTCTTCATCATCATCATCTTGATCATTCCATCCTGGCGGACCATCACTTTGCATTC
CCCACCCAGGCCCAGGGGGGCCAGGTGGACCAGGTGGGCCTGGTGGTCCATCCCATGGTC
CCATAGGTGGTCTCATCCCAGGTGGTCCCATGTCCATATTTTGATTATTATAATTATTCT
TATTACGCATCATATTTGGTGGCATTCGGGGTGGACCCATTCCTGGAGGTCCCATTCCGG
GAGGACCCATTCCGGGAGGTCCCATACCGGGTGGACCCATACCAGGAGGTCCCATACCCG
GGGGGCCCATTGGAGGTGGACCCATTCCAGGCGGCCCCATTGGCGGTGGTCCCATTCCCG
GAGGCATCATTCCTGGTGGAGGTGGACCTATTCCCGGCGGCATGTTTGGAGGTCCACCAG
ACGAGCTAACAGGTGGTGGTCCAGGCGGACCCATTGGTGGAGGCCCCATGGATCCCGGTG
GCGGTCCCATAGCTCCTGGTGGCGGTCCCATAGTTCCTGGTGGTGGTCCCATAGT
(3475 bp)

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