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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoEE_comp68469_c0_seq2
Scaffold_idBomo_Chr28
NCBI non-redundant
(nr)		PREDICTED:_RNA-binding_protein_5-A-like_[Amyelois_transitella]
Ontology
GO:0000166 F nucleotide binding
GO:0000245 P spliceosomal complex assembly
GO:0000381 P regulation of alternative mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0006397 P mRNA processing
GO:0006915 P apoptotic process
GO:0008270 F zinc ion binding
GO:0008380 P RNA splicing
GO:0042981 P regulation of apoptotic process
GO:0043065 P positive regulation of apoptotic process
GO:0044822 F RNA binding
GO:0046872 F metal ion binding
Transcript
Level		FPKM:0.10 TPM:0.17
ORF EntryO_BomoEE16310_5prime_partial:A_BomoEE_comp68469_c0_seq2
Sequence
(Nucleotide)
GAGTAAAAATATGGCGTCAGTCTTTTGTAATGATTTATGAAAGGAAATAATCTAATTACG
ATCACAGAATTTTCAAGTGTAGTGCACTTTATTAAAGTAAATAATTTAACATCCGGCCTA
AAGTGTTAAGATACTAGGGAAGTTACTCGTAATTACGTTACAGCAGGTAAACGTGAGTAA
AAGCTACATTGAAAAAGAAAGCCACGCATTGCGCAGCAACCATGGCGGAGACAGGAATCA
TCAGTGAGTATAAGTATCTGATCGTGCGGGGTGTTCGCAGGCTACGATGTCTTGGCGAAG
TCGAGAGGAGCGCTGCTCGAGGTGGGACACCAACAAATGGGAACTCCGCGATCGGTCGCC
TGTATGGGAGCCTAGGAACGTCAGCCCTGAGTGCAGGTCGCCATCCCGACACCGACACTC
GCATGATAGACGGCCTCGTCACGAGCGCGACTTTCGGCGTGACCGCCACGACCGGGATCG
CGACCGTGACCGAGAACGCGACAGAAAACGGTACGAGGAAGCGCCCGCGCCCCCCTCGCC
GCCCGTCATCAGCGATGACAAAAAGAGCTCACGGTCTAGTAGTCGATCCGATAGTCGTGA
GAGGGACAGGTCTGATATGGAAATAGAAAAGGACAAGCACCAGGATGAGGTGCAGAACAA
CGCATCACCGGGTGATTGGATCTGCAAGTGTGGTCTATACAACTTTAAAAGACGTCAGGT
CTGTTACCGTAGAACTTGTAATGGGAAAAGATCGGAGGGTGTAGTTTATGGAGGTGATGG
GGATCGTAACGGTGTAGTCGAAACACCTGGCATCACAAAGAGGTTACTCTTTAGGAGGCT
AGATGCTTTGACTACTGAAGAAAATATATTGGAAGAGCTTAAACTACGTTGCAGTAAAGA
AGTTCTAGAGTTAATTGTAGGTATTTCAATTGGTAGAGAAACTTTAACAGGTGCATCAAA
GTGTCTCGCCTACATCAATTTCAACTCCATAGCAGATTCTACAACAGCACATACAGAGTT
GGTGAATCTCCAACCACCATTAAGGATTGACGGTCGAGAAGTGCTTATAAGCTTTTACAA
TGAACCTAAAAAAATTGTTAAACCAACACAAGTTGACTATACGTCATACTACTCTCAAAT
GTCTTCGTACAGTGGTGCAACAACTCAAGCAATGTCTGAGGCTGATCGAGTCAATGCAGC
TGCTGCAGTAGCTCAGTCTGCTATATCGGCAGCCCAGGCTAGACAGCTATCATGGACGCC
AGTTGGTGCTGTACCTTTCACTGGTACTACCCAAACTACAAAAACAAATGTACCCATAGG
TGATGGGAAGACAGTTTATCCTGCCCCAGATGTGAGAACATTCATGTATGATGAGTCATC
TGGTTACTATTATGACCCGTCAACTTGTTTATACTATGATGGGAAGACACAATATTTTTA
TAATAGTCAAATCAGTCAATATATGTATTGGGATGGTAAAACAAACACTTATATTGCTGC
AACACAGGCTCAGAATGCTGAACAAAACAAACAAAGAGAGGCCAAGGAGCCTGATGAAAA
GAAAAGGAGAGACAAAGAAGACAAAGTTAAAGTAGCTAAAAAGATAGCTAAGGATATGGA
AAGATGGGCACGGACTCTAAATCAAAAGAAAGAGAATGCTCGGAGTAACTTTGTTATGGA
ACAGCCAACTGACACAAGTGCTAGCAAAGGCTCAGCAGACATTGGTTTTTCAGTACTAGG
AGCTGGACCATCATTAACTCATGTAAGAGAAATATCCCCACCTCCCAACACAGATGAATT
CTTGGTCAAAAAGATCTCAGAACCAGTATTTGATAATGATGATGACATTATTGACTGGGA
CAAATTAACCTGCTTGTTATGCAAAAGGAAATTCCCTTCTGTAGAAGTGTTGAATAAGCA
TAAAGTTATGTCAGACTTGCACAAACAAAATCTAGTTGAATTTAGGAAGAAGAATGACTT
GATTCCACAGATGAATGGTTATAGAGACAGGGCAGCTGAGCGACGTATGAAATTTGGTGA
AGATGAGCCTCCAATGATAAGAAAACGTTATGAGCCTTCTGAACCAATAGGTCCACCCAT
TAACCCGCACCCACCTCCAAATGTAGTAGATACAATAGGAGGTAAAATGCTGCAAAAAAT
GGGCTGGTCGGAAGGTCGAGGTTTAGGTAAGACTGAGCAGGGACGAATAGCTCCCATAGA
AGCAGAACAGAGGCCAAGTTTAGCTGGTCTGGGGCAGAAAAGAGGTATATACACTCCCAC
ACCTGGTGAAACATATCGCGATACAGTTAAGAAACTTATGATAGCAAGATATAAAGAAGT
TGTTGGACAAGAAGAAGGGAAATAGATTCGACCTGGAATTCTACAACGCTCCCGTCACAC
GCGTATTCGACAATCGGTGAGTAATTAATATTATAAGTGACCTTTTTCATACAGGTGAAT
AATTTTTTATGTGGGAAACGTCGTGACTGCCTTTTTATCGTGAATTTTTACAGCAAAATT
TGATGTTGACACTTTCGGTAACAACCTATTTATTTTTACCTCTTCTTTGTGACTCTGGGA
AATAGTACAAACGTTCCTAGATTTAATTTTTTTTTATGAGAAATTGTCAACATCCTTTCC
GATCTCCGAATGATTAAGACACAATGGAAACAGAAGACAAAAAGCGTGAAGAATTGTGAC
TAGTTTGTGCAAGGTGTTGTGAACCAAGAGATAACACTGACATTTTTGACAATTTACATT
GCAGAGTCTACGCGCGAAGCTGGAACCACGTGCCAAACAAAATATTAAAAAGTACTTCAT
TTTATACTCGTTGGATCGGAAATGAATTGATCAAACGCCATTTTAAAAATATTTAGCTTT
CTTCCGTAGCGTTTCGTGTATAGTTTAACTTTAATGTATATATATATAAAATAATTATGT
AGTAAGGAATTTTGAGATTGCGTTTGATTGTAAATAAAGATAAATATAGGTAGGTTATAT
TATAAAAACACGCTCTAATAATAAGCCCAAAAATTAAAGTAATATTTTAATTCTAGTGTT
TTTCGGGGCAAGATATTACGCTAAAGTAATGAAACTAATGTATTTTCATTGATGAATGTC
AATATTTAAGTTAATCTGCGTTGATTTTGTGAATATTACGTTGGCTAGGTCGATACAGGT
CTAGCTAATGAAAGCCTGTCGAAGATGAGTTCTTGTACAAGATTAAATTAAGCCTAAACA
TAGGTGTTCATTTAAGCTAAATTTAATGATGATTATTACAATAAAGACATAAATAATTTA
CAGAGATTAGTATTAAAAGGTAGGTAATCAAGTTGCATAATTGTTGTTAAAATAAATGTA
TATACATGAAATCCTAAACTTATATAGAAGCGCCGAAATGCGCCCTTGTCAGCTGTACGG
TAGCATTTTCCCGTAACTTATAATTTGTACTCAATAAGTGCATACTAGTCGATTGAATTT
GCCGTCCTAGTAAAACATCACAACGACGTCTGTTGATGGATTCTATTCGATAATAAAAGA
ATGATTTATTTTAATAAAAGAATAAAAACAGCAATTAACATATACGTGTATATAGTTAGG
TACATTTTAATTTCACTAGCATATGTGTAGTATTGGGTAAATGGGATTTTTAAATTTTTC
ATTCAGTCTTATTATTATTATCATTATTACTTAGGTATTTATAGCAGTTAGTTTTGAACA
AATTTTCGAGATTCGATGATTGTAAGGCGTGGGTTAAAAGTATTGTGCATTTAAAATATG
TACGATAAAAAAATGTGACGCGGTCTTTAATATTTTAAAATAAATATTTCTATACATAAC
GGACTATTTATAATTATTTTACCTTACTAACCAACTAATGTTACGTTTATGAATAAAAAA
ATAATAATATGCATTTGAGTTTTGATGAACTCTGTGGTCATTTAAGGACTCGCGCGGTAG
ATTATTAAATGATCTCCAAAAAGTAGCCAAAAATTGTTTATTATTACATATACAATGCTT
TACGTATAGTTAGATTTCTGTAAAATTTTAGGATTTTAGTTAGCTTCCCCTGTAGGTAGA
GTATCCGTAAGGGCTGAGCAACAACGGTATGTGGTAATGTTCGTCCTCTTTTGTGTTAAA
CACGATCTCAACAATAGGGTAAAGGGTTTCCTTATTCAAATTATTATAATAGTCTCCGAC
ATTAAACCTCAATTTGTAAATTCCGACGGCCATGAAGTCTTTTGAAAACGGGAATTGTAT
TCTGCCGTCGCTAGATGTCACTGTATTGTGCCACAAAGTCCAACAAGAGTCGTCACGTTT
TTTAAATAATTTTACAATTAAACCATTAGCCGGTTTCCCGGTACTGGTATCCAGAACATG
TGTAGATAAAATCGGTCGAGACATGTTTGCGAGGCGCGAGCTCAGGG
(4427 bp)

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