SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoEE_comp68367_c0_seq4
Scaffold_idBomo_Chr6
NCBI non-redundant
(nr)		PREDICTED:_heterogeneous_nuclear_ribonucleoprotein_F_[Bombyx_mori]
Ontology
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003727 F single-stranded RNA binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005737 C cytoplasm
GO:0006397 P mRNA processing
GO:0008134 F transcription factor binding
GO:0008380 P RNA splicing
GO:0016020 C membrane
GO:0017025 F TBP-class protein binding
GO:0030529 C ribonucleoprotein complex
GO:0043484 P regulation of RNA splicing
GO:0044822 F RNA binding
GO:0071013 C catalytic step 2 spliceosome
Transcript
Level		FPKM:0.86 TPM:1.49
ORF EntryO_BomoEE16022_complete:A_BomoEE_comp68367_c0_seq4
Sequence
(Nucleotide)
GGCGACGGTAACCACTCAGCATCAGGTGAGCCGTGTGCTCGTCTGCTTACAAGGACAATA
AAAAAAATAAAAAAAAACATCCCAGAGTAAGCCTCCCCCTCCGCGTGCAAGTGAGTCTTC
GTCGTGGGCAATGACGCCAGCCCTGTATAATGCTCAGTCCGATACAATGAAGCTACTCTT
TGTTGCCTTATTCAAAATGTACATCTGTTTCATCATTTATTCTCATATATACTCATGCGG
AATTAATAAAACTCTTGAAAAGGAAATAAACTAAAAGTAGTATCTCATTTGGTATTGAAA
CAAGCACCCGAGGCGTGTAGTCCATGAGCGATAGTGACCTCTCAAGAGCAGGTGGACCAA
CACTGCTATCTCCGGTGAGAAACAACTAACATTCAATGCTATTACATATAAGTAATTTTA
GTTCAAAAATATGGTTTTATTTTTCTTGGCATATTTTAATCAATAAATAATAGCTAAAAA
TATTTGTAGTTTGTAGATTGCTTAACCTGCCGACAAGTACCTTAAACCAAGGTGTAACAA
CATAAAAACACGTTAACGGGATATTTACTATTCCTAAAAACTAAACCCTTTGAAAAAAAA
TCCTGAACAAAATATAATTTTGATGCGTAGTGCTTCCCCCCGCCCCGCCGCTCCTCCTTC
GGTACGCAGTGCCCCGCGCCCTCTGCCCTGCGCCCACCTTAGACAACTCAATAGCCGATC
ATCATTTTTGCAATGCTAACTTTATTAGTGTATAATCTTATTTTATTTCTGTCAACCCAT
TGTATTCTGCTCATCTTTATTTATTAAAAACAGTTTCTGTATCTCCATTGCCTGTTAATT
GACCTTCATTTTCATTTTCCTACATCAGAAACTAGTGATATGTAAACAGAAGAAAGCCTT
TGTTCCACAGAGGACCATCACAGGCTCATAAAAATCATTAGACATAAATTTACAAACACT
ATTATGCCAATTTTGTACTCACTAAAAATTAGGATATTAAATAACTAACAGCGGCCTTTA
TATATCATTGTAACGTATCCACTGTATCTTTAAAGTGATTTTATAATATAGCTTCACTTA
CATTTAGGAGGTGGTATTTTTTAAAATAAGTGAATTGGATATAATTTAAAGGTCAATCAA
CATTGTTCTGTATTGTTTCAGTTTTACAGACATTCAACTATGTGTAAAATATAATAAAAA
TGTATGAAAGATAGCATTGACAGTAGATTTTCAATAATTTCAGTGCTGAGTTGATGGGCT
GTCTCAAGTTTTGAACTAAGCACCACCAGTCTGCTATAGGTCTATAGGATTCCACGGGAA
ACCTGTTTATCATCCACCAACATTACTTTGTTTATATTCTGAGATAAAGTCAGACCCATA
GCACGCAGGTTTAATACTTAACCCTCTACACCAAATAAAATGTTGCTGGCTTGGGTGGTG
TACTGGGGTCAGAGTTAACAATGATTTAATGTTCACTTTGTCGTGTTATTTTTTCATTTA
CAATAACACAGTCTTGAAAAAATAGTCAGAGGTGATGAGATCTTCGGTTGTGTAATTGAT
TGTTGAAATCATTTTGCTTGTGTTTTTACGTTGATTGATTCATGTATTCAGCTGATTACA
GCAACTAGTCAACTATAAAATTCATATGGCTCTTCCTTACTCTGATATTTTTGTAAAATA
TAAAGTCATAATCATTGAGAATCCCAACACACCAGTCTCAAGGTCCAAACAGCAACACTT
TTAAATGAACATCCCCCCACCTGTGTCCTATTTTCTCCCTGTCTCTGATGAGAGCCTCTT
GTGCGCTCTCCTTGTCTACGAAGTATACAAACGCCTCGCCCGAAGCCCGCCCCGTCTGAT
CCGAGAGCAAGTGGACACCGTCCGGTGCCACCGGAATACCATCAAAGAATTGTACAATTT
CTTCTTTGGAGCAACCATAAGGCAAGCCCCGGAGTTTCACAATACCCATGTCATCAGAGA
CAAATGGAACATTGTCAAATCCATTTTCATTTTGCCGCATGGCATTAAGAGCCCATTCCA
TGTCTTGCCGATCAGTTGCAAATACTTCAATGTATCTTTTTCCTAAATTTTCCTTGTCTT
TTTTGAGTGCAAGGTCCACATCCTCTTGACTTTCAACTTCTACAAAGCATTCTCCTGATG
GACGTCCTGGACGTATTTCAGTTAAATACACACCAGCTTTCCCATCAACTATTTTAACCC
CGTTTAGAAAATCGATGACATCTTCGACGGTGGTGGAGAAAGGCAGGCCACGCAATTTTA
CAATATAGCCGCTATCTCCCGACCCCAACATTACTCCTGCTATTAATAATATAGAGTAAA
TTATATTTTTGAAAACAAAAGTATTTTAATTTTTAACTGACAAAGAAAGATTAGAAAATA
TTCTCGAAACAAAACCAGCGAAACCAGAGACTTCATCAGATTTCTATTGCTT
(2452 bp)

- SilkBase 1999-2023 -