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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoEE_comp68227_c0_seq2
Scaffold_idBomo_Chr3
NCBI non-redundant
(nr)		PREDICTED:_U5_small_nuclear_ribonucleoprotein_40_kDa_protein_isoform_X2_[Amyelois_transitella]
Ontology
GO:0000375 P RNA splicing, via transesterification reactions
GO:0000398 P mRNA splicing, via spliceosome
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005682 C U5 snRNP
GO:0005732 C sno(s)RNA-containing ribonucleoprotein complex
GO:0005737 C cytoplasm
GO:0006396 P RNA processing
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0044822 F RNA binding
GO:0071011 C precatalytic spliceosome
GO:0071013 C catalytic step 2 spliceosome
Transcript
Level		FPKM:23.20 TPM:40.47
ORF EntryO_BomoEE15721_complete:A_BomoEE_comp68227_c0_seq2
Sequence
(Nucleotide)
GACTTAAAGGTCTTAGTTACCAGGGCATAAAATACCTTAATTTTTTTTATAAAAATAGAA
ACTGTTTACATTTACCTACATACCTACCTACCTACCATGTACCTACCTAATTACATATTA
TAATTGAATAAAACTATCCAATTATGATTGTTTGCAAGTTCTTCCAGCAAGGCTACTGCC
GATACGGCCAAAATTGTAGATTTGAACATGTTTACGGTTCCAAATACACATATCATGCAA
CAACTCCACAGCCGGTGGTGACTAACACGGAGCACACTGATGAACAACTTGTGAATCAAG
TACAGACAGATGTTAAATCAGTACTACACGGAAGCCAATGGATACTCTCGTGTTATGCAC
CCTACAAGGAGAAGCCGATAATTCCGGGAATTCATGATCTATCACCAGAGGAAATGAGGC
TTTTTATATATGAATCGAAAAGAAATAATACTTTAGAACAAGCTATTGCTTACATTAACA
ACTTAACTAGAGAAACAAGACAGAAATATGAACAATTGCTACAACCAACACCACATTTGA
TCAAAGTTCTACGATCGATAATGCAATATAAAGAAGGGCAGACTGTGCTGTCTCCTTTCA
CAGCGACACAATCCGGCAGTGGTGCGGCCACTTCAGTATTCAGGAGTGCAGTCCAAAGTT
CTGTTTTCACTCAGAACAATCCAACACCTTCAATTTTCTCACAAAACAACCCACAAAACA
TGTTTGATAATGGAGCTACAAATAATATGTTTGCACAAAACAGTACACAGTTAGGAATAA
CGGATGCCGGAGCAAAATCAATATTTGCTCAGGCCAATCAGAATGTATTTGCACAAAATC
AAACCAATGTGTTCAGTAATACCAATCAAAACTTACAAAATCCTTCCAACATCTTTGCTA
GTGCAAATCAGAATTTGTTTAAACAGAACGACACTCAAGGTTCACCATTTCAATTGAATA
TCTCGCAGCAAAATATGGATACTAATACCTTCCAAAAGTCAAATACACAACAATCAATTT
TTGGACAAAACGTGCCTTCAGTAGAACAGAGTGGTGTTTATAGTAAAATGGAAGAGCTCA
CACCAGACGATTTGGAAGCATTTAAAAGTGACAAGTTTCAGTTAGGTTTTGTACCTGAAA
TAGCACCACCCCAAGAGTTATGTAACAATTGAAACGTGTATAAACAACATTATGAGTTGA
CATTAATGAGTATTTCCAAAATTCCAACAGACTGGAGTTAGGTAGTCTTGTGACCTTGCA
CGGGCAGGTCCTACCATTTAGGCTGTGAAGTAGTTATGTACTCTAGTTTGAAGGATAAGA
CACTGGTTATGCTACAGTTGAGACTTAGGCCTCATGTCTCAAACTGGATTATCACATTAA
CATTGCGTTGTCTATGTTCTGATAACAATTTAACACTAGACCACGAGTTTGATTACTAAT
CTAAGGTACAAATAAAAAAGTGTTAATAGGAATGGCCTTACATTGCCCCTTGTTCAGCCC
CTTACATTGACAGTCAGTGGCATATTTATTGCCATTTAAGATATTGATTAAATACAAAAT
CAAGCATTAACATTTGAACAGAACAGTGATAGTAGGGAATACTTTAGAACTTCAACAGAA
TGCATACAATCCAATGTATCTCGTATTTGTATACTATTCACAGATCTCAACACTGCACAA
TAAAAGACAAATTTTGCTTATAAATTAAATGTATTCCTATATTACATTTTACATATTTAT
ATCGCTTCAGTATTACAGTTAAATGTGGAATAATAATGATGTATGTGCATCTCTGGTTCC
TGTCATTGCTACCAAATTTAATTACCAATGTGAAATTGAGTAGATTTTGCATTTAATCGA
ACAATCAACTACAAAAATATATATGCACTGATAATGTAATTTTAGAAAATCTTTTAAATA
CATTAAACCCACTTTTATTTTATATTCTAGTGTAAAGGTAAATTATTTCTAATGTTAAAT
GTTCTATTTGGACTTAAGTGTTTTTTATTACAGTCAGTTTAAGTTTCATTTTAATACATT
TAATGTTTTTTTTTTTTTGGCTTTATGAGTTTCCGGATCACCTGAAGTAAAACATTACCA
AAGCCCATGTAAATGTTTTATCCTGCTTGAGACATGAGGCGGTTTTCACAATTGTATAGT
AAGACTGATATCCACCCTGCAAACCAAAATAACCTGCCAACAGTAATACGAACACATTGT
CATTGATCTTTTATACACTTTTAGTAAATTAATATTGTTTTGTTTGTCTCCACACCCTGT
AGATTTCCAATAATCACGACCAAATTGCATTCATTATTATTTTATGTACTTGCTTAAGAT
CATCAAACTCAAGACAGGAAATTGTGTAACTAAAAATTTAAAAGTAAAATCAGTCCTCAA
TTTTCAATTTCTCCCAAATAAATCTGTTTATCGCTGGACACTGATAACACTATGGGTTCG
TTTGGATGAAAGTCCACATCATTGACGGATCCTATGTGTCCAGGCAATTTGTAAAGAACT
CTTCTGGATGTTGTGTCCCAAACGTATAGGAAACGATCTGAAGAACCTGCTGACACCTTG
GAGCCATCCTGAGACCATGCACATCTGAGCAGATTTTTCTCAAAGTTGTGTTGGTGGCCA
GACATTAATTTGACACAGCGTTCTGTTGGTGCAAACGGTCTAACGTCCCAAATACGGAGT
GTATTATCCATTGAATTGGACAGGAGATATGCACCATCCCATGACAATGATAATCCTGTA
ACCGTGTCTGTATGTCCTTTTATTTTCAAGGAAATCTGATTATTCCTTATATCCCACATT
TTGATGACATTGTCCACACCGCTGGATAAAATTTTTTCAGCTGTATCATTGAAGAGTACA
CTTGTGACTGGATATGAACTGTCAAACGATGCAACTGGATTCCTTTTCCTTGCATCCCAT
AATTTTATGGTGTTATCATCTGAAGCTGAAACTAAGAGTTCTGGACCTCTTCTTGCTCCT
GAAACAGAGTTCACAAAGTTAGCGTGACCCTTTAACTTCTTGATTCTAGTCCCGGTGGGT
ACGTCCCATACTGCTACAGTATTGTCCGTAGCTCCAGTGTACAAATGTGAACCATCAGGT
GAGAAGCAAAGCTGCATTATTGCTCCCGTGTGACCTTTCATCACCATCACATTCTCGCAT
TGACCATACACATTCCATATTAATATTTGTCTGTCAAAGCCTGCAGAAGCCAAATGTTTG
CCTTCAGGATGAAATTTGCCTGTGAAAATTTCTCCTTGGTGTCCTTCCAACAACATAATT
GGCGCATACAAGTTTGATGTTCGTGGAACAGATGAAGTAACAACTGCCTTTTCTCTGGTG
CCGACTACTGAGATCTCATGCCGTACTCGCTTGGAGGGTACAAGAGACACATCCTCTGCT
TTTCTTTTAGTTTCTATATCTGGCATTTTTTAAGATGTTTATTTACCTATTTGTTTTTAT
AGCTACAAACAGAAATACTAACCTTAAAAATGGTATAAGGACTGTTTAGCTTGTTTCATT
TGTCAATTGTATAGGCAAAAGGAAAATAGCCAATATCGCCAAATTCTTTGTAACAAAAGA
CAAAGCTACCTTCTAAAAAGTTTTTTTTT
(3629 bp)

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