SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoEE_comp68018_c0_seq3
Scaffold_idBomo_Chr9
NCBI non-redundant
(nr)		PREDICTED:_neurexin-4_isoform_X2_[Bombyx_mori]
Ontology
GO:0003015 P heart process
GO:0004888 F transmembrane signaling receptor activity
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0005918 C septate junction
GO:0005919 C pleated septate junction
GO:0007155 P cell adhesion
GO:0007163 P establishment or maintenance of cell polarity
GO:0007165 P signal transduction
GO:0007391 P dorsal closure
GO:0008039 P synaptic target recognition
GO:0008065 P establishment of blood-nerve barrier
GO:0008104 P protein localization
GO:0008366 P axon ensheathment
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016080 P synaptic vesicle targeting
GO:0016081 P synaptic vesicle docking
GO:0019991 P septate junction assembly
GO:0021682 P nerve maturation
GO:0030054 C cell junction
GO:0035151 P regulation of tube size, open tracheal system
GO:0045216 P cell-cell junction organization
GO:0048786 C presynaptic active zone
GO:0060857 P establishment of glial blood-brain barrier
GO:0061343 P cell adhesion involved in heart morphogenesis
GO:0072553 P terminal button organization
GO:0097105 P presynaptic membrane assembly
Transcript
Level		FPKM:0.27 TPM:0.47
ORF EntryO_BomoEE15261_5prime_partial:A_BomoEE_comp68018_c0_seq3
Sequence
(Nucleotide)
GGCGTCGGGGTCGGCCGCCCCGTCCGCGCCGCGCTCCTCCTGCGTCAGGTACTCGCCCTT
GTGCCGCGACAGCGCGCGCACCAGCACCACCGCCACCACCACCAGCAGCAGGAAGATGAA
CCCCAGCACCGTTCCGAGTATGGCTTCGTCCGTCTTCCGGAAGTTGATCTCGTGCTGCAG
GTCGAGGGCGGGCGGCGGCCGGGTCTCCACGGGCTCGGGCGGGTGCGTCACGGGCTCCAC
GCCGCAGAAGTCCTCATGCAAAACTCCTCCTCCGAGGCTCCTGACGTTGGGCGGCGGGTC
CTGCTGGAAGAGCAGCTTGAGCGGGTAGATGTCGTCGAACTCCACGCGGCTCACGCAGCC
CACGAAGCCCTCGCCCATGGACTCGTTGCGGCCGATGTACATGTACTGGATGTTGTTGAA
CTGCGCGTCCGCCGACTCCTTGATGTTGAAGCGGTACTCCTGCGTCTCGTAGCTGTCCAC
CTGCAGCGCGAGCGTGGCGCCGCTGTCCCGCCGCGCTAGCCGCACGTCGTGGTACTGGCC
CAGCGCGAAGTGCTTCCCCTGGAACACGATCTCCTGCCGCTCGAAGCCGAAGTCGAACAC
GACGCGCAGGTGACCGGAATTGGAGACCATCAGAGTCAAGTACTCTCCTGAAATGTTCGA
GTAGAAGCCGAGCAGGAATCCCTTCGGGTTGGTGGTGGTGAAGCCGACCCGGATCTTCTC
AGCGATGGTGGAGCGCCACGAGCCCAGGAAATCGTACTTGATCAACGAGTTCGGTCGGAG
ATTTACGCCGATTTCGTCCGCACAGATGGGGCCTTTGAAGGCCGTCCAGCGACAGTCGCA
CGTGTAGGAGTCGAAGCCCTCGATGCACGTGCCGTTGTTGAGACACGGCGACGACGAGCA
CTTGCCGACGCAGCCCTCGGATATGCCGTACAGCCCGGTGCGGGCGAGCGGCGCCAGGTG
CACGGGCCTGCCGTTGAGCAGCAGGGCGCGCAGGCAGCCCACCAGCCCGTCGCTGCGGTC
CAGCGCGGCGCCCAGGGCGAGGCCTGTGGACAGCTGCAGGGCGCGCGCCGTGCCGCCCAC
GGTGCGGATCTCGTTCTTCAAGGCTCCGTCGACCACCAGCCTAGCCTCCTTCCTATTCCT
TTCGATGGACACGGAGTGCCACTGGTTGTCAGCCAGACGGTTGCTGGTCTCCACGGATAC
CCCTAGAGGCGTGTCACCCACTTGCAGCTGCAGCTGCAGTTGATCCCCTCCGATTATTGA
CAGCTTTATGTAGTCTTGCGGGCCCTTGGAATGCAGCAGAACAGCATTCTCCTTGGTCGT
CTTGAACTCGAAGTAGATGTCGCCACTGTGCCCCAAGTCGAACGTCGGCAGCAGGATGAT
GGCGTCGGCCACGCGGAACGTGATGGCGTTGTTGAACAAATCGTCCCCCTCGCACAGCAG
CGGCCCGAGCGTGTAGCGGCCCTCCTTCTCGTCGAGGTGGCTGCCAGTGTCGCCGAAGCG
CAGCTGCTTCACCGGCAGGAACTCCTTCTCCGTGATGTCGCCGCCGTCCGACTGGAACTC
CTCGGGGCGCAGCTGCGCGTACTCTGCGTCGCAGTTGCACCACTTGGTGTTGTCGAGACA
GGAGCCCAGCAGGCCGCAGGCGCACATGCGCGAGCCGGGCGTGGCGCCGGCCCAGTAGTC
CATGCGCTGGCCGGAGCGGGACACCCACCACGCGAACGGCTGGAAGTTGGACTCCTCGCT
AGGTGAGTTCATGAGCCTCGAGTGCCTGCACCAGTAGTCCAGTCGCTGCGAGCAGGACAC
AGATCTGTTGAGCAGGGCCTCGAGCTGCGCCCGGTTGGCGTCGTAGATGACGTCCTGCCG
GAAGCTGCCCGCCTCCTGGTAGCCGTCCACCACCGTGCTCTGCGACACCGAGTGCTTCAC
CGACGTTATCACGCGGCCGTCCGAGTAGAACTCGCAGGTGACGGGGAAGGGCGGCAGCGG
GCCGGAGCCGTCCACGTCGATGTGCACGCTGGCGGAGCGCCGGGCCGCCGACACGCTGTG
GTACGCCTGGCACGACAGCGGGTGCACCGACGTGTGGCACACGGCGCCGGCGTAGCCCGT
GTCGCGACAGTTGCAGGAGAACTCGTCGGCGGTCTGCGCGCAGCGGCCGCCGTGCTCGCA
GGGGTTGGGGCTGCACCTGTCGATCATCTGGCAGGCGTCGAACACGAGCTCGTTGGGGCA
GCAGTAGTCCTCCTTCTTCCAGTCCGTCGGCAGGCGGTAGTTCCCGTCCACGGAAATCTT
GCGCATGCAACCGATGAAGCCGCGCGGTGGGGCTTTGCCTCCAGCTATAAAATAATAGCT
GCCGGTAAGAAATCGCAGTCTCTTTGACGTGTGCACGGCTCTGGAGTCCATGGACAGCAC
CAGCGAGTCGGGGGCCAGGGTCAGCATCAGCGAGTGCCAGCGACCGTCGTTCCACAGCTC
CACGTAATTGTCCAGCTTCACGCGAGGAGATCCGGCCGTCTCCAACTCGACTTTCACTTT
ACCATCTTCAAGATATACCTTAACATATCCCTCGGTGTTGAACCGGTGGTACACGAGCAG
CCCCTGCAGCTCGTAGGTCCTGAACTCCAGCGACACGTTGAGCGCGCTGCCGCCGGAGTA
CCCGCGCAGCTTGGCGTACGAGCCTTCCTTCAGGAACGTCACCGGCACCACAGGGGGCTC
CGGACACGCGTACAGGGTGTTCAGTTTCTGGAACTTAAATGGTTCGCCACTCTCATAGCC
CTTTTTCAAATCCTGTATAACGTTGGTCGCGTTGAGGTACATGTTCTCTATGCAGCCTGT
GAAATTTTGGTTCACAACTAGACCCTCTTGTAAATTCGGCACGCCCCCTATGTACAGAGC
TCTGTTCAAGTTGAGCCTGGAGAATTCTCCCTTGATTCTCTCCTGCACTATAACCCGGTC
CACAGAGAAGATGATGTCCCTTCTGTTCCTAGATATGACTACGTCGTGCCAAATATTGTC
ATCCAGAAGACTGCCCACAGACAGAGACGTAGACATGCCGGACCCCAAATCAATGTTGAG
CACGAGCCGGTTGTCCCTGAGCTGCAGCGCCAGGTAGTCGCCCTGCGTGCCGCGCGAGTA
CAGCAGCGCGCCCGACGCCGTGCTCGTCTTCAGCCGGAACCGGATCACTTCCCGGGACGC
CGATATCGGGTCCCGGAGCAGGTCCATTTTTATTAGCGACGACCCGTTGAAGTACAGAGT
GTCGGCGACGTAATCGCAACCGTAAACTTCCACTCTCATAGATATTTTGTCCCGCCATCT
CATCGGGTTAATGCGCAAATATTGAGCTATTATAGGCACTTCGAATTCGTTTTTTCGCAC
TGTGTCACCGTCTTGATTCCCGTGAAACATCTGCGTGTACCCATCCCTCCTGGCTACAAG
TTTCCAACTCTCCCCGTCGTCAGAGTACTGAAGCATGTACTCCGTGACATATTCGTCTGT
CGCATACCTCCCCTTTGTGGCAATACCGCGCAGTTCCACGCGCTTGTGGAAGTCCAGGGT
CAGATGCTGGTAGTACGAATTCTCGAAGGGCGTCCAAGCCGATGTCCCTTCACCGTTACA
GTTAGTTAATTTAGTAACCAAACCGTGTAATTATTTATAGTGTGATATTTACATTTTATT
TAGTAAAATAACCCTTTAATGCATGAATTTCCGAATGCAATAAAAAATTTACATCAGTGA
ATTTATTATGATTACTTTTTTTTTAACTATGACATTGTTTTTTTTTTGTTTTATCAATAA
CAAGTCTGCTGCAACCATATTTAATTTGACCGTTGTGTAATATTATTCTGCATTTAAGGG
CTATAAGATAGATGTTGAAATATTATTATCATTAGAAAGAAGTGTTTGGGGACAGTTTTA
CACCAATTGAAACATTATTTGACTATCTACTGCATTATCTACAGAATCTACAAAACCAAA
AACATGCATACCAGCACCTTTCTGCTGAAAAATTTATATTTTTACCTTCACTTCACCACC
AGGAGCTTTATACTGTACGTAATCTAGGCCATTCGATCCATAGCTGATATGGTATTCCTG
GACAAACTCTTGGGAATGAGCCCGACCTTGTACTGCGATCCTGGTTATGTTCTTAACACT
GCCAAAGTCAACAATCAGTTGCTGATCGAAATCACTCTCCGAAGCAGTCCAAGCGTTTGT
ACCATATAGCTTAGCATTCTCGGGTCCTCTATCACGTAAGCTTGAAGTAGCCGATAGTTT
AGAGTTAGCTACCAAAGGCTCATTGCATTCGTAATCGTAATAATAACGCACGAAATCTGC
ACCGGATTTTGTAATGCTATAACAAAGCAAAACAAATAAATAATACTGAAATCCAGTCAT
CATTTCATAATTATATTAAATGTAGTAGAAAACCAATGCTGCAGTTTATAACTCGAAAAT
TAAAATTAAACTTAAAAGAAGCGTTTGATCATTACGAACGTTGTCAGTTTGGGCAGTTGT
CATATAAACCGGCGCCGGGCAACACCCTTGTAGTGCTGCC
(4540 bp)

- SilkBase 1999-2023 -