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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoEE_comp67990_c0_seq2
Scaffold_idBomo_Chr5
NCBI non-redundant
(nr)		PREDICTED:_tumor_protein_D54_isoform_X3_[Plutella_xylostella]
Ontology
GO:0000166 F nucleotide binding
GO:0000398 P mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0006369 P termination of RNA polymerase II transcription
GO:0006397 P mRNA processing
GO:0006405 P RNA export from nucleus
GO:0006406 P mRNA export from nucleus
GO:0006810 P transport
GO:0008270 F zinc ion binding
GO:0008380 P RNA splicing
GO:0031124 P mRNA 3'-end processing
GO:0044822 F RNA binding
GO:0046872 F metal ion binding
GO:0048025 P negative regulation of mRNA splicing, via spliceosome
GO:0051028 P mRNA transport
GO:0070062 C extracellular exosome
Transcript
Level		FPKM:9.33 TPM:16.27
ORF EntryO_BomoEE15060_complete:A_BomoEE_comp67990_c0_seq2
Sequence
(Nucleotide)
TCCGGCGAAAAACTCAGTGGGCTGATGTATGGGTTAACAAACTCTTGTATACAGGGTGTC
TCACAAAGGGCACATTCAAGCCGAAAACGGTAATATTCTATTAGTCGATGTGACAAATAA
AAGTTCCTCAGTAAATTACTTAAAAATTACAAGTAAATATTTGAACATTATGGATCAAAC
TATTTTTCTGCCAATCCTTGAAATCTGTTTAACACGAGATACCGTAATATGATTCGTAGT
ATAAAATAAGACTGGCCACACATGAAAAGATGCGATTTTGTATCGGAACTAAACGTAAAT
AATATGAATAATGGTCGTACGGATTGAGTGCGCACACTGAATAAGTTATGTTCGTCAAAT
AGGCACTGTCTCCGTGACATCGTTTTCATTAAGCTCTCTTTGGCACGCGTTGTACAATCT
GTATCTTCTAGGTCGAAATCACGTAAGTGGTAACTCAACTCAGATTGATCTCATAAAGTT
TTATGTGCTTAACCCGGGTTCAACCCACGAATATTTTTTCAATAATTTATTTGTAATGTT
TTTTTTTATAATTGTCTAATTAAAATAGAAATCCCAACAACTTCGGATTGCTATAAGAAG
ACGGAAGTTATAAGAAAACGCAGCAAACGCGATATTGAGGCTGACCTAATCAAGCAGATT
CTCACACACTGGGCTTTCACGAGTTAAGATTGAATACATATCAGTAATAGGGTTGTATTC
ATTGTTTGAAACGAGATGAACGAATTCTATAGAATATTATTCTATTATATTCTATCTATC
TATCATATTGTTCTAAATTCAATAGTGTCTATTTTGTCCTGACGCGTTCAGCTGAATAAA
CGACTTAACCTACTTACCTAATACATTCAGAGCTGTCATCGAACAATTGAAACAATTAAT
AAATTAGTTTTGTATGAAACTACCAATTACAGCTGAGATTTTTTACATTTTTAAAGTGTT
CTACATTGTTGATGTTAGAACCACATTTAGACTTAATATATATACCTACCCCCTTTATGG
GACACCCTGTACACAAGAGGCTTTTCTTTTCCAACATACTTCAGTCGAGCTATGCGTATC
CAAAACTACATACATACTTAAAGTTTGTACCACATGCATCTAAGACATCTTCAATATTAC
CGATATTCAATTTTAACTCTTTATCATGTTAAGAATCACAAACAATGCATGGTTTTGTTT
TTTGCTAAAATTTGGTTAATACAAATTTCTAAACAAATCTGTATTTTGAATATGAATTTT
ACCAAAAAATATCAGAACTTTTTTAATGATTTAAAGATCAGTTTAGATAAGACTGGCTTG
GAGAGCAAAGCATGTATGTATTGATTAAAAAGTTTAATACCTAAATGTTAAAGGAAAAAA
ATAACCCACATATTTTAAAGTAAGGGGTTTGCACGTCACCCCAGTGTTGGTAATGTAAAA
TACAATAACCACTCAGCTCCATGTATGTACTCTTTCAAACTTTAACACCAAAATCTGTAG
GACATTTCTTTTAAATGCCAGACATCATTAATATTCTCTTGATAATATATTAATATCATT
CTCATTATATTTATAAAAAAAATATGTAAGTCTGAGCACACATATTTATATAAATACATC
AATAACAAAAATTAGACTCCCAGAGCCTGACTTCAAAATAAATGCTCTCAAAAATTATCT
GCTCAGTTGCTCTCCCAGTCAGCCTTACATAGCCTTACAGCACCACTAGTCATCAAATTT
CCAGTCAGTGTGGAAAAAAGTACTAGAAAATCTTTCCCAAGCCAGTATATGTAAACAGCC
TTAAAAACTTTCTGTAATAGTCACACATTTTACTCACCTTATTACCATTTAAGTTATTGC
CACCAAAGGCCACCTATCCTACTTTAGACAAAAAAATACAATTCATTGATATCCAGGCAT
ATTTTTGAAATCAATGTTTTTCTTAAATAATTTTGTGGTCATATTCCTCAAAAACATGAA
AACATGAATTCTGTTCATTTTGTGGCCTCTGAACACTATAATGTTAATATAATGTGTAAC
TCACTGAGTATACGCAGTGATTACATTAGACGTGCGTCGCTACTCGCAGTATGAACAAAC
TCAATGAAGTTGTCGACAAGTGAAGTGTGCACGTAGGATGTAGCTACGTAGTTCACAGAG
CGAAGTTACAGTTGGGGCCAACTCATTCGGAGTACACGCAGAGAAGTGAAAGCTACGTAG
CGCAGATAATAAGAAGTGCAGACACTGACGAGTTCGTTCTCGGCGCACAACCCAATGATA
ACCTGCGTCGCCGACGACGTGAACAGTCACGAGCGTAGTGTCCTCTGTCGCCGCAGTCGT
AACAACGATCATCATACGGCCGAGGAGGCAGACGCGAACGAGGTGGTGGACCCCGGCTGC
CATAACCGCGACCCCCATTAGACATTTCTACACGGGCTCTACGACCGCAAATCGTCCGTC
CATCCAAACCACGTACTGCGTCTTCAGCATCCCGTGGATCTTCGAATTCAACAAATGCGA
AGCCTGGAGGATTTCTTGCAACCCACACATTCCTCAGTGGACCATAATATGAAAAGGCAT
CTTCAAGTTCAGGTTTACTAGCATTATTCCCCAAATCTCCAACATAAACTTTGCAGTCAC
CATAGCGTGACATCGTGGACGATGCTTTTTGGATGGTCAATTAATATTTTAATGCGTTTT
ATCACCAAACCATTACATTAGTTGCCCTCCGTTTTTAAAATCACTCTTTCAAACAAAATG
GCGGTAAGACGCGTACCCTACCGGTACCGGTCAAGTTAGTGAAGTTAGCGTTTTCAATCT
CTGTTCTCGTTGGATAGTTCAGATATTTTTTTTTTTTGTGGAGTTTATGGCCTGGTATCT
AGACCTTTAGGCCAAACGTGTTTCGTTTCGTATGAGTAGAGTTGCCAGCCTCGCGGGGCC
GGGCGCGGTATGGGAGAGGCGATATAGCGAATGACATGTGACGTGTGGAGTGACAGCTCA
GTGTCCCGCTCAGGGCAGCGGCTTGTGCTCGGGGATGGGGGGCGAGGTGGCGCCACTGGC
GTCACGCAGCGCCTCGTCGAAGCTCTGAGTCGAGTTCGATCTAGAAGCTACTTTACCCTT
GACGTTTTCATAAGCCGAACCGACGCGTTCTTCGATGGAGCGGAAAGACTCCGAGTTGCG
CATCTGACCGAGCTTGCTGGACACGCCGGCCGTGATGCCGCCGATGATCGAAGACGTCTT
CTCGGCGGTCGTTTTTATCACAGATTCAGTTTTTTGGTATACTTGGCTTTCTTTGACGTT
TTTCAAACCCTGATTGACGTCCTCGGTGATCTCTTTCCACACCGTGATGCCAAGTTTACG
TTTTAAGTCCGAGCTTTGACGGATCTTGCTTTGCAGTACAGTTCTCAAAGTCGCGATTTC
ATCTTCGACACGGGCTAGCTCGCGACTCCATTCAGCGCGTAACTGGTCTGCCTGCTCGGG
TGTGAGGCCGGCCAACTCATCAGGAGTATGTATGTCCCCTGCCACTCCGGTGCCTGACAT
TGCTTCTTCAGCTGTTTGAACACCGCTCATATTTTACAATGAAAAACTCTTACGGTGTGA
AATGAATGAAAAATATTAAGCTTATATTTCTTTAGAAAAGTAATAGAACACAAAACTTTT
ATGTATGTAGCACACTAATAAGCCAAGCACTTTTAGTGAAAATTGTGACCAATATCGAGT
TATGGTAGGTAGGTATAAAATTTTGATACAAAACGATTTTCAAACGTCAATGAACAATGA
TTGCACACGTAAATGACGTCTGACAGGTTTTAGTTTA
(3817 bp)

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