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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoEE_comp67987_c0_seq3
Scaffold_idBomo_Chr11
NCBI non-redundant
(nr)		small_nuclear_ribonucleoprotein_70kDa_(U1)_isoform_B_[Alligator_mississippiensis]
Ontology
GO:0000166 F nucleotide binding
GO:0000243 C commitment complex
GO:0000398 P mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005685 C U1 snRNP
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0016607 C nuclear speck
GO:0030529 C ribonucleoprotein complex
GO:0030619 F U1 snRNA binding
GO:0043462 P regulation of ATP-dependent activity
GO:0043484 P regulation of RNA splicing
GO:0044822 F RNA binding
GO:0048026 P positive regulation of mRNA splicing, via spliceosome
GO:0061084 P negative regulation of protein refolding
GO:0071004 C U2-type prespliceosome
GO:0071011 C precatalytic spliceosome
GO:1904715 P negative regulation of chaperone-mediated autophagy
Transcript
Level		FPKM:4.46 TPM:7.77
ORF EntryO_BomoEE15040_complete:A_BomoEE_comp67987_c0_seq3
Sequence
(Nucleotide)
TTTTTTTTTTTATTCTTAATTTTATTGGGAATCAAATGCTGTACATGTACATTTCTCTGG
GTGTATGGGGGTCAATACATGGACAGATCCGGGTTGTACTTGGTCTCATCCGGAGGTTCT
TGCTTGATCATCAGCCCTTCGTGCTGTTCCATCGAGTAGTCGTCGAGCGGCTCCTGTTTG
ATGTGTATGTCGTCGGGCTTGAGCTTGTGTTCCTTGTCCCGGGAGCGGCGTGAGCGCTTC
TTGTCCCTTCGAGAGCGGCGACGCTCCGAGCGCGAGCGGGACCGGCGGCGGCGGCGTGAC
TCTGGTTCTTCCTCGTCGCGCGTCTTGGGCCTGCGCGAGCGGGAAGATGAGCGCCGCCGC
GAGCGGGAGCGGGAGCGGCGCCGACTCGCTCCGTGTTCCCTGGGCGTGCCGCCCTGTCTC
CCCCTGTCCTCCCCGTGTTCCCGGAGGTGTCGTTGTTCGGCCCTGTACCGTTCCCTTTCC
CTCTCGTTGTCCTCCCTTCCGGAGTGTTTGATGTTGACGTCAGCCCCCCCGCGACGCGTC
CCCCCCAGTCCCCCACCGAGCCGACGTGGTAACCATCCCTTGACCGTCCTGGCGCGCTCC
ACGTCCACCAATACCCGCTTACCGTCAATCTTCTTACCGTCCGCGTGCTTGTATGCCGCT
GAAATACACCACGGAAAGATAATTACAAATAAAGCGATCGGACGCCTCATTCCACGTCTT
ACCTTAACGACAATGCCTTTAATTAAATCAGTTCAATTTTTATACTTTCTTCTCCCGACT
ATTTCCAGCTTACCATTTTATACTTTGAGACAGACAAAACTTACCGATCCCTGGTCAAAT
CGTTCGTTTTGTTTTAAATAATAATAATAATTTAATTCTAATAAAATAAATATCACGTAA
CGACATTGAGACACTACAAATAAAATTGAAACTAAAACATCAATTAGGGCAGACGAATTA
ACATTTGTCGATGAACTGTTAGATATCTCAAACGTGAGACATGAGGTCGAATTCAACTTT
CACACACTTTATTCGTTCATTAGTTTCGTATTTAGTCCAAAACTAATATTAAAACGACAT
GTGTACAATGGAAACGTCACTTACTTAATGACAGATGTCAAAATTGACCGCTGCCATTTT
GACACTGACTCTTCTCTTTATTGCTCTCGGCCCGCTCGGGGCACCGTTAATTGATTTCGC
AGCGGAAACAGGCAGGGCTCACGATACACTCTCCCCAGACACAGAAAAAATAATCGGAAG
TTTGATTTTGACTTTAGTTGGCCCCTTTAGTGTCACAGTATTTATGTATTTTTTTATAAT
TTTTTATTGGAAATACATCACCCTGCGTGCGCGTCTGGTGACGATATAGACTATAATATG
TTTACTGTCAAACTCAAGTTTCAATTTTTTGTCAAAACCAACCAAAATAAACATTGACGG
TTTTGGAAGAAAAAAAAACCTGTCAAACTTTTAAGAATCTCAGTGTGTACAGGTGAAAAT
CCGTACACAAATATAACGCAATAAGTAGTTCTATTATCTTTTCCCTGAAAGAAAAACTTT
GCAACTGTATTTTCAACAGCTAAATATTTTACATAAATAATAATAATGAACAACTGGCAT
ACCTACGCTTTGAATACCCACCTACCGATAACAGAGCCGACCGTCGAATAAATATATTTA
TATATATATATAT
(1693 bp)

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