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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoEE_comp67977_c0_seq2
Scaffold_idBomo_Chr11
NCBI non-redundant
(nr)		U6_snRNA-associated_Sm-like_protein_LSm4_[Operophtera_brumata]
Ontology
GO:0000245 P spliceosomal complex assembly
GO:0000387 P spliceosomal snRNP assembly
GO:0000932 C P-body
GO:0000956 P nuclear-transcribed mRNA catabolic process
GO:0002230 P positive regulation of defense response to virus by host
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005688 C U6 snRNP
GO:0005737 C cytoplasm
GO:0006396 P RNA processing
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0017070 F U6 snRNA binding
GO:0030529 C ribonucleoprotein complex
GO:0033962 P P-body assembly
GO:0044822 F RNA binding
GO:0097526 C spliceosomal tri-snRNP complex
GO:0098779 P positive regulation of mitophagy in response to mitochondrial depolarization
GO:0098792 P xenophagy
Transcript
Level		FPKM:0.20 TPM:0.34
ORF EntryO_BomoEE14956_complete:A_BomoEE_comp67977_c0_seq2
Sequence
(Nucleotide)
CAACTATTTATTAAGTCAAACACTGTATCGACACTTTCTTGTATATTTTATTTCACTAAG
CCAAGCCAAGTTCAAATCAGAACTTGATAGGTACCTACTGCATTTTATAATCTATATTTT
TAGTTTTTATAGTAAATAAATACTTACAAAATATAAACGAAATACCAGTTAAGAAGGATA
ATTTAGAAAATGAATACAATTGTTTGCTTTTTATTTGATATTTGAAGTTGTATTTGTAAA
TGTTTTTTTTAATTTTTTTATTAATATCTTAATTGAAATCTTTATTAAATTTGAAAACTA
CAATATTCTAAGTATGCATACTATAGTATGCTAAGTCACACTAACTTTATACATAAATAG
TAATAACGAAATGAAGGACTGAAATAAAACATAGGGAATGTGAAAATTGAGAAAACAATA
CAATTTTTATTATTTAAATATCATTCCTAAATATGCATCCTCGTTAATCTTGTTCAAACG
ACACCAGTGTTGCCAGCGTTGGGCGGCGTGGGTTGCGAGAACATAAAGGCAGGTGCGTTT
TGGAATATCTGCTGCTTCATGAACTCTGTGGTCGCTGACTTGAGGCTCTCTTTGGCTCCG
AACTTACACTTTATGTAACCGTAGAGATTAGCGCCTGTTAGAGTCAAGGCGATCAATACT
AGGAGCTGACGGGCCTCGAACACCCAGTGCGACTTGCCGTTGTCGTCCACATAGTTCCAC
CACCTCAGTCCAACTAGTAACCGACACAAACTGTTTATTAGCATTATCCTCTTCACCAAA
TGCGATGGTGTCATCATCAAGCAGCGGGACCTGTGGCACAGCTGGCGTTGCCGAATTCAT
AGCTGGATGGTTCATTAATAATCAATACTATTTATTTCACAAATTTATTTTAAATGAGTG
TCAGGATAGGTAGATAGGTATTGATGAATTATTTCAACAGCAGTTAAACATATTGAATTA
AATAGGAATAGTAGGTAATCCTGAAAATTCGAAAGGTCACACACACAATCCAAATCACTC
TCAAATATTAAGTGTATTATCTGTGCGTCTTCTGACAACTGAGCACTGTCAGTGTCAACC
TAAAGTCCTAAAGTAACCTAAAAAAACAAGAAGTTGACAATACACCAAACAACGCGAAAG
TAGGAAAATAAACTTCTAATACAAATAAATAATAAACTTCAAAACGAAGTTGATCATTAC
ATCAAAATGTTGCCGCTATCTTTGTTACGGACAGCGCAGAACCACCCTATGCTTGTCGAA
TTGAAAAATGGCGAAACTTACAATGGTCATCTCGTAAGCTGCGATAATTGGATGAACATT
AATTTACGTGAAGTTATTTGCACGTCGAGAGACGGCGACAAGTTCTGGAGGATGCCGGAA
TGTTATATACGTGGTAGTACGATCAAATACTTGAGAATACCGGACGAGGTCATCGACATG
GTGAAGGAGGAGACACAGGTTAAAGCGCGCGGTCGTAACGAGGTTTCCAAGGGACGCGGG
CAAAACATGAGGACCGGTGGCCGTGGTGGTAGCCGAGGCGCATTCGGTAACCGCGGCAGA
GCACCTCCACTAGCCCGTGGCGGCGGGAACCCGCGACCACAGAACAAAAATAAAAATAAA
ATGTAAGATAAGTTTTTTAATAAATTAAGTTATTTGGCTAAGGAAAAAAAAAAAA
(1675 bp)

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