SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoEE_comp67977_c0_seq15
Scaffold_idBomo_Chr11
NCBI non-redundant
(nr)		hypothetical_protein_KGM_15116_[Danaus_plexippus]
Ontology
GO:0000245 P spliceosomal complex assembly
GO:0000387 P spliceosomal snRNP assembly
GO:0000932 C P-body
GO:0000956 P nuclear-transcribed mRNA catabolic process
GO:0002230 P positive regulation of defense response to virus by host
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005688 C U6 snRNP
GO:0005737 C cytoplasm
GO:0006396 P RNA processing
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0017070 F U6 snRNA binding
GO:0030529 C ribonucleoprotein complex
GO:0033962 P P-body assembly
GO:0044822 F RNA binding
GO:0097526 C spliceosomal tri-snRNP complex
GO:0098779 P positive regulation of mitophagy in response to mitochondrial depolarization
GO:0098792 P xenophagy
Transcript
Level		FPKM:2.22 TPM:3.87
ORF EntryO_BomoEE14979_complete:A_BomoEE_comp67977_c0_seq15
Sequence
(Nucleotide)
CAACTATTTATTAAGTCAAACACTGTATCGACACTTTCTTGTATATTTTATTTCACTAAG
CCAAGCCAAGTTCAAATCAGAACTTGATAGGTACCTACTGCATTTTATAATCTATATTTT
TAGTTTTTATAGTAAATAAATACTTACAAAATATAAACGAAATACCAGTTAAGAAGGATA
ATTTAGAAAATGAATACAATTGTTTGCTTTTTATTTGATATTTGAAGTTGTATTTGTAAA
TGTTTTTTTTAATTTTTTTATTAATATCTTAATTGAAATCTTTATTAAATTTGAAAACTA
CAATATTCTAAGTATGCATACTATAGTATGCTAAGTCACACTAACTTTATACATAAATAG
TAATAACGAAATGAAGGACTGAAATAAAACATAGGGAATGTGAAAATTGAGAAAACAATA
CAATTTTTATTATTTAAATATCATTCCTAAATATGCATCCTCGTTAATCTTGTTCAAACG
ACACCAGTGTTGCCAGCGTTGGGCGGCGTGGGTTGCGAGAACATAAAGGCAGGTGCGTTT
TGGAATATCTGCTGCTTCATGAACTCTGTGGTCGCTGACTTGAGGCTCTCTTTGGCTCCG
AACTTACACTTTATGTAACCGTAGAGATTAGCGCCTGTTAGAGTCAAGGCGATCAATACT
AGGAGCATCCACTTGAACTTGAGTCCGAAAAGGCAGAATATAAAGAAAGTGGACCAGACC
AAGGGGCACAGCGTCAGGCCCATCCAGAACAGGCGGCTCTCGTTCCTGTTGACCCGGCTC
TGACGGGCCTCGAACACCCAGTGCGACTTGCCGTTGTCGTCCACATAGTTCCACCACCTC
AGTCCAACTAGTAACCGACACAAACTGTTTATTAGCATTATCCTCTTCACCAAATGCGAT
GGTGTCATCATCAAGCAGCGGGACCTGTGGCACAGCTGGCGTTGCCGAATTCATAGCTGG
ATGGTTCATTAATAATCAATACTATTTATTTCACAAATTTATTTTAAATGAGTGTCAGGA
TAGGTAGATAGGTATTGATGAATTATTTCAACAGCAGTTAAACATATTGAATTAAATAGG
AATAGTAGGTAATCCTGAAAATTCGAAAGGTCACACACACAATCCAAATCACTCTCAAAT
ATTAAGTGTATTATCTGTGCGTCTTCTGACAACTGAGCACTGTCAGTGTCAACCTAAAGT
CCTAAAGTAACCTAAAAAAACAAGAAGTTGACAATACACCAAACAACGCGAAAGTAGGAA
AATAAACTTCTAATACAAATAAATAATAAACTTCAAAACGAAGTTGATCATTACATCAAA
ATGTTGCCGCTATCTTTGTTACGGACAGCGCAGAACCACCCTATGCTTGTCGAATTGAAA
AATGGCGAAACTTACAATGGTCATCTCGTAAGCTGCGATAATTGGATGAACATTAATTTA
CGTGAAGTTATTTGCACGTCGAGAGACGGCGACAAGTTCTGGAGGATGCCGGAATGTTAT
ATACGTGGTAGTACGATCAAATACTTGAGAATACCGGACGAGGTCATCGACATGGTGAAG
GAGGAGACACAGGTTAAAGCGCGCGGTCGTAACGAGGTTTCCAAGGGACGCGGGCAAAAC
ATGAGGACCGGTGGCCGTGGTGGTAGCCGAGGCGCATTCGGTAACCGCGGCAGAGCACCT
CCACTAGCCCGTGGCGGCGGGAACCCGCGACCACAGAACAAAAATAAAAATAAAATGTAA
GATAAGTTTTTTAATAAATTAAGTTATTTGGCTAAGGAAAAAAAAAAAA
(1789 bp)

- SilkBase 1999-2023 -