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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoEE_comp67854_c0_seq3
Scaffold_idBomo_Chr11
NCBI non-redundant
(nr)		RING_finger_and_WD_repeat_domain-containing_protein_3_[Operophtera_brumata]
Ontology
GO:0002039 F p53 binding
GO:0002230 P positive regulation of defense response to virus by host
GO:0004842 F ubiquitin-protein transferase activity
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0006281 P DNA repair
GO:0006974 P cellular response to DNA damage stimulus
GO:0008270 F zinc ion binding
GO:0010212 P response to ionizing radiation
GO:0016567 P protein ubiquitination
GO:0016605 C PML body
GO:0016874 F ligase activity
GO:0031571 P mitotic G1 DNA damage checkpoint signaling
GO:0035861 C site of double-strand break
GO:0046872 F metal ion binding
GO:0097371 F MDM2/MDM4 family protein binding
GO:0098779 P positive regulation of mitophagy in response to mitochondrial depolarization
GO:0098792 P xenophagy
GO:2000001 P regulation of DNA damage checkpoint
Transcript
Level		FPKM:12.89 TPM:22.48
ORF EntryO_BomoEE14609_complete:A_BomoEE_comp67854_c0_seq3
Sequence
(Nucleotide)
GGTCGACGTTCGCCATTGTGATTACATAACTCAGTTTTCTGAAACCACCTGCCTCATGCA
CCATGCACCACGTTCAAACTTGAGGCTCTGTGGGTAAGAACTTCAGCTCTATAATATGGG
TGTACAAAGAGAAACATAACACAGTATCAAGGTTTAAATTTTACTTTCTCAACACAATTA
ATATTTACAAAACATTTTAAATATAAATTATATTACAAAGTCTAAAATATCATTTAAGAA
TTATTATATTTATACAAATCAAAGTACTTAGCGCGTTGTTATAAGCAAGTGACCATAGAC
GCTGCATGCTGAAGTCACAGCTTCGGGAGCAAAAGAGACAACAAGCACTCAATTTAATTT
TTCATGACTCTTGTCAAAAATGACAGCTGTCAAGACAATTTGAACGCTACAACGTCGTCA
AGCAATATAAAAGTTACATTAATATGGAATGGTGTAATCGTGTCACGTATTGGTGGGGAC
CGCCTTGTACAGCCTGAGTCGGGACTCTGACAGAGCCGCCAGTATATTGCTTCCGTTCGT
CTCGACCGAGCACACGTCCAGCGCGGGCTCCGACGCGGGCAGGGACATGGTCCGCGTGCC
GTCGACGCCGTGCAAATAAAGCGCTGAATCGCTTTCAGAATGAGCGGCGACCCACGCAGA
GCTCGCTAACCTCACCCAGGCCACTTTGGACATCAACGAGGACCTGAGCGACCCCGAGAA
TGTTTCTACCACGTCACAAATAACTTCGCCGTTCGGTATGCTCGGTTTCAATTTACAGAC
GCTCAACTTAGATCTTTCTAGACCATTCGAACTCGGTCTGGACGCTATGACGGCGCGTTG
GGACGCGTTATCATAGGCCAGAGACATGAACGATCCTTCCACGGGCAAGACCCTCGGCTC
ACACTGCCTTGTGTTCACCGCCCACAGCTTCGATGAGTTCAACTGGCACGACAAGAGACC
ATATTCTGTGGAACACAAAGACACAACTGGTGACAGGTCCCCCGGAGAGCTCAGCATCCG
TAAGTAGGTGCTAGGGTTTCTGACGTCATAGTGGTGGATCACGCCTCCGACGCCGCCTAC
GTAGAACTCGTTGCTGCGCAAGTTGTCCCAAGAGCAGGACCAGAGCGGCATGCCCGAGTT
CACCGTCACGCTGAGGATGCCGCGCTCGACTATCCGCGCCGTGCTGTCCAGGGCCACGCT
CAGCAGCAGGTCCCGGTGCTGGGAGTACGTGATGTCGCGGATCGGCTTCGGGTGCAGATG
GACGAACTGCCCCAGCTTGTAGTCGACACAGCTGATCTTCCTTATCCCGAATCCAGGGAA
GAGATAGTTGACGCTCTTCTGGGACACATACAACTCGTAGGTCCGGCAGTTGTAGGTCAG
GACTCTGCAGCCTCCGTCCTTGCATATTTCAAGGTTCTTCTCCAAGGCGAACCTCCAGGA
CTTCCTGGAAGGCTGCTCCTTGTTAGATTGAGACTTCATTAGGGTGCTCCGTAGGCCCTC
GAGCTGTTGCACGCAAGCGCGATGTGCTATCTTCATCTTTTCTAATTCCAGTTCGGTTCT
GCTCTTCTCTGATTGAAGAATCTCAACTTGTTTTTGTAGAGCCGTAATTTGCGAAGTGTC
CGCCGCTACCAAGCGCCTCGCGTATATGAACCTCAGGTCCTTCAAGTTGGCCTTCCCCTT
GCAGGTCGGGCACGTTCTGTCTTTTAGTTTCTGAGCCTTCAGCCAGCGCTCCACACACTC
TGAACCGAAAAGGTGACCGCAGCGCAGTGCTACTAGCCTGTGGTCACCGGAGTTACCCCA
CGAGTCCAAGCAAATCGGGCAGGTTTCGCCGTCGACCTCTTCGACTTCGTTCATCTTCCT
GAGTTTGGCTGGGGGTTCGATGTCATCAGGGGGCCTGGGGTTCAATCTGATCGAAGCGCA
ACTATTCGAATCTTCATTTATAGATTGTCTCGTGCTCTCATCGCTGAATGAGGTGAGAGG
TGAAGTGAGGTTGCTGTCCTCGCTCTGAGCCGGGAGGTGTCCTGGTCCGTTAATGATGAT
GTTCAGCACCGTGTCGTTGCTGTCATCGTTGTCGTACCTCAAGGGACCGGCCAAGTCTAT
TTGTATGGGCTCATCGCTGGGCACATCTAACGGACCCTCGGAGGGATCGTGATCATGGCT
TCGACTAGTCGACGGCAGATCTATGTGGTTGTCATTCTCTGCTGCTGCGAAGCTTTGCTC
CGGTTCTTCGAATATATTTGGACTCCCCGGTGACTCTGTGCCCTGGCTCTGTGCGGTGGG
ATACTGGCTCATTTTTCGTAGTCATTGGGTTACCTGGGAACAGAGAAAATGTTTTTGGTC
TAAGTCATCCTTTTCTTGATTACATAGAAGGTGTGTTGGTAATGTTCCTGGAAACGAAGA
CGAGTGGTAGAATTGCTGATGGCTCAACAAACAACGCAAAATAATAATTATCTAAAATTT
GAATTTCCAATTAATTTAATTTAACAAATCCTTTACCTCAGACTTTTTTTTTTTCGGGCC
GAGGCCCGAACCTCTTACGAGGTCCCCGC
(2549 bp)

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