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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoEE_comp67325_c0_seq1
Scaffold_idBomo_Chr6
NCBI non-redundant
(nr)		putative_spliceosome_associated_protein_[Danaus_plexippus]
Ontology
GO:0000381 P regulation of alternative mRNA splicing, via spliceosome
GO:0000389 P mRNA 3'-splice site recognition
GO:0000398 P mRNA splicing, via spliceosome
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005684 C U2-type spliceosomal complex
GO:0005686 C U2 snRNP
GO:0006396 P RNA processing
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0044822 F RNA binding
GO:0071004 C U2-type prespliceosome
GO:0071013 C catalytic step 2 spliceosome
Transcript
Level		FPKM:2.73 TPM:4.77
ORF EntryO_BomoEE13835_complete:A_BomoEE_comp67325_c0_seq1
Sequence
(Nucleotide)
TTTTTTTTTTATTTGGTAAATATTTAATTTTCCCACCATTAGATAATTTCAATGAATCTT
TTTATCACGACTAACGTAACAACCTATTGACTGAATGTCAATATTCTGATGTAAATTCTG
TATTAATTCTTCCAACGTGTTTCGCAGTCCCTTATCATTAACTTTTATAGTATTTTTTTG
TATTATTTCTTTCTACCGCCTCGTTCCTTGATCTGTAGCTGTATGACGGCACCCGGGGGC
ACGTTGTAGTACGCCAAGCTGTTAGTATCCTTGAAGAACAGACCCTCGTAGTGCAGCTTC
TGCTTGGCGGTGGGCATGTTGGTGGCGCGCTGCAGCATGGCCTTGAGCTCGGCGACGGCG
GCCGACAGCGGCAGCGTCAGCGGCACCGCGCGCCCGTCCAGCCGCCACTCCGCGCGCTCA
GGCGCCGCCGGCAACGACACCTGCAGGGGGACTGCGCCGGGGTGGCGCGCGAGCCAGGCG
CCCTCGGGCTCCAGCGCGTCCTCGGTGCGGGCTCTCTTAGCGGCCGGGCCCTCGTCCTCG
GGCTCCGCCACTGTGCCCGGAGGGACTACCGCTCCGAAGTTGAACGCCGGCGGTGGTACT
GCACCCACTGGAGCCGGTATGAGCGGAGGTCGGGGCGCCATGGGGGGCAGGACCATTAGC
GAGGACATCGGCTGCAGCAGCACAGGCGGTGCCGGGGGCGGGGGAGGCGGAGCAGCGCGG
GGGGCAGAGGGGGGCGCGGGGGGACGCCCCGCCCGGCTCTGGGCTGCCCCGGTCACTGGC
TTCGGACCTATTTTCTCTTTCTCCTCGTCGGGGAGTAGACCTTTAACCTTGTGTATCTGC
TGGATCTGGTCCTCGAGCGTGATGTGCGCCCTGGCGGCGCGGGTGGCGGCCTCCACGCTG
GAGGTGTGCCCGTCCCACGTCACGCGCTCGTCGCGCTTCTTCTCCTCCTCGCCGATCTTC
TTACCGATGGTCGTTTCCTCGTCCCCTACACCGAAGATGTCAGTACGACGCTCCGCCAAC
TGTTTAAGCGAAGCCTCGATGGCGGCCCCGGGGGCGAGCGCCTCGTCCCGGTCGGTGCGC
TCGGCGGCGGCGCGGTCCCGCTGCTCCAGCCAGCGCGGGTCCAGCAGCCCGATGCGCACG
TGCTCGGCCACCTTGCTGGCGGGGATCTTCTCGCCGGTGATGGGCGACACGAGCCACTCG
TCCCCGGCGGCGGCGCGGGGCTTCGCCTCCTTGGGGTTGTACTTCTTGACGACGACGCGG
TCGGGGCGCGGCGGGAGGGGCGCCTCGTCCGCGCGCGGGGCGTCTTGCTCCGTCTCGGAC
TCCGAAGTCGAGCTTTCCTCTTCCATGTCTTGCACGCGGTTATCGTCCGGCCGATGGGAC
TGAGTTCGATCCTCCATTTCCGCAAGTTCCTCATCAGACTCCGATTCCGATTCGGATTCA
ATTTGCATCTCAGTATCATCGTCGTCATTCTGGTTCCGTATTATATCTTCACCCCTCTCT
TGGGCGAGGACGCGGGCTCCGACTTCTAGTGGAGTGGTCGGAGGAGGGAAGTCTCCGGGT
TCCCCTGCGGGGTAATCTACAGTTTCAACAACGACAAAATCGTGCCAGTCTATGGAGGCA
TACGCGAGCCTCTCTTTCTCAATTTTGGCCTCGTCAGCGGCCTTGCGCTTGGCTTGGTGC
GCGTGCCAGGCAGCGCGACTGCGAGCTTGTTCTAATATCCCGCTGCGTATCTCAGCATTC
AGCTTTGATACTAGTTCTTTTGGCGGCAGCAACACCTTCGTGTACTGCTCAAGCAGACGC
GTGAAGTATTGGAACAGTGAATGCTGGGGACGAAGAAAATCAAACTGATGATTACGCTCC
TCTTTCTTCATTAAATCCGTTAAGAACTGACGACCGTTTCTGGCGACAAATTGCGCGGTT
AATTTCACTATGTCGAGCTCCAGAGCCGATATAGACGGTGGATCAGCGATAAATTCGAAA
TCTGGTGGTGGGTCGCGCGGCGGAGGCAGTTCTGCAGGAGCAGCTGCCTTGAGGAGCTCC
TGCTGGCGGGCCGCTGTGGCTGGAGCGAGACCCATTCGTTGCTGTCCTGATGGCATAGTT
GGTGGTGCAGTTGGTTCGGGAACTTTTCCCTCTTTGATCTCTCTGACTTTATGCTGATAG
TAAGCATGGTAGGGATCCCCTGAATTAAGGAAGTTGAACTTTGGATTGCCCAGCTCATTC
TGTCTGATCCTAGCTTCAAATTCAGGACCATTACGAGCCACAAAGCTGGCAGTTTTATCA
ACAATATCTATTTAGCTGGGTTAAAGAAATATTTTTGAAAATTCTGTTTATTATTGTTAA
AAGGATACTTCTGACTTCAGGTGGTGGATAAATAATGCCAATGACTGGAGGGGGTGGTGG
AGGCGGATCTTCCGGGATCTCTAACGACTGCCCCGGTGGTAGCATTACATCTATAGATGG
CATTGTGCCTTCCGTTTACAGCTACTCTCTCAGAAAAGTAGACGATATTTACGCACTATG
AACAACAATTTACAACAACAGCCCAAATGACGCTATAAATAACCTCAAAATTTGACAGTA
GTAGTAGTTCTATTTTTCCA
(2600 bp)

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