SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoEE_comp66821_c0_seq1
Scaffold_idBomo_Chr13
NCBI non-redundant
(nr)		PREDICTED:_exosome_complex_component_RRP43-like_isoform_X3_[Papilio_polytes]
Ontology
GO:0000176 C nuclear exosome (RNase complex)
GO:0000177 C cytoplasmic exosome (RNase complex)
GO:0000178 C exosome (RNase complex)
GO:0000467 P exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0003723 F RNA binding
GO:0004532 F exoribonuclease activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006364 P rRNA processing
GO:0008150 P biological_process
GO:0017091 F mRNA 3'-UTR AU-rich region binding
GO:0034427 P nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5'
GO:0034473 P U1 snRNA 3'-end processing
GO:0034475 P U4 snRNA 3'-end processing
GO:0034476 P U5 snRNA 3'-end processing
GO:0043488 P regulation of mRNA stability
GO:0043928 P exonucleolytic catabolism of deadenylated mRNA
GO:0071028 P nuclear mRNA surveillance
GO:0071035 P nuclear polyadenylation-dependent rRNA catabolic process
GO:0071038 P nuclear polyadenylation-dependent tRNA catabolic process
GO:0071042 P nuclear polyadenylation-dependent mRNA catabolic process
Transcript
Level		FPKM:2.39 TPM:4.17
ORF EntryO_BomoEE13248_complete:A_BomoEE_comp66821_c0_seq1
Sequence
(Nucleotide)
CAGTTGTATGTGGAATAAAACTGATAGCTCTCAACATTTTTCTCTTTAAAGTTGAAGTCA
TCATTGCATAAACAACAAGATAAATTGTGCTCTGAAGTGTGTGAAGGGATGTGACAATGC
TGGTCTTATTAAATCAAAGTTATGACAAAACTTCTAAAGAAAAGAAAAGGAAGGAAGAAA
GCAGACATGTTCACATAATGACTGCAACAATGAAGAAATAACATTATTATTATTTTAAAA
TATTTATTTATTTATATCTATCTAAATATAGATCATATAAATATTAATCAATTATGAAGT
ATTAAGGATTTTTCAGGAATTAGCAGTACCAAAAGCTGAAGAACCTGACTTAGGTTTTTT
AATAACAAATGTGGAACTACCTGCTTTATGTTCTTCTAAGTATAGACCTGGCCCTCCTTC
AGATTATGCACAAGTTATAAATAATATTGTATCAGAAATTATCAAAAATTCTAAATGCAT
TGATCTAAAAGATCTTTGCATTGTACCAGATAAATTAGCATGGGTTGTGTACTGTGATAT
GGTGTGTATTGACCATGACGGGAGCCTGGTTGATGCATGCATCATAGCACTGATAGCCAG
CTTCAAAACATTACTATTACCATCTGTTAATTATGACACAGAAACAGAAGAAATAAAAGT
AGAAACAAATGAGAGGATAAATCTCAAAATCCATGGACTACCGGTAGCTACAAGCTTTGC
TGTGTACGAACATTTTCAAAGCCAAATAATATTATTAACTGATCCAACAAATTATGAAGA
AGAGATGTGTGGAGGCAATGGATCAAATTTAATAATCTCCTACAACAAAGGCTTATTATG
TGGCATTCAGAAATTGGGAGGTGGTAGTTTATCAACAGAAAATAATGAGGAAGCAATAAG
ATTAGCTGAACAACACACAATAGCAGTGGAGAAAGTAATCAATGCATGTTTAGAAGGAAA
AGGAACAAATAAATAACAATATACTTAATGTTATTGTTTGTTTAGTTTTATTGATTAGCT
TATTTTGATTCCAATTTAATGGAATAAAATTCAATGTTAAATAATAAAAATGGATGGTTG
TATGTGTTCTATGCATTCCTGAACCATTCATCTGATTGTGATAAATCTTGCTATAAGTGT
TACCAAGCGTCGTATTGAATTGAAATTTCACACGCTTAGAAGAAACTGATAAGAAAACAT
TAATTAAGTTTTTCGTATATTCCAACAGAATCTTCAGGATGAACGTCGATACGGACGATT
AAAAGGCATATATGTACGTG
(1280 bp)

- SilkBase 1999-2023 -