SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoEE_comp66256_c0_seq1
Scaffold_idBomo_Chr5
NCBI non-redundant
(nr)		PREDICTED:_neuroblastoma-amplified_sequence-like_[Bombyx_mori]
Ontology
GO:0000149 F SNARE binding
GO:0000956 P nuclear-transcribed mRNA catabolic process
GO:0005737 C cytoplasm
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0005829 C cytosol
GO:0006810 P transport
GO:0006890 P retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0070939 C Dsl1/NZR complex
GO:2000623 P negative regulation of nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
Transcript
Level		FPKM:2.34 TPM:4.08
ORF EntryO_BomoEE12726_complete:A_BomoEE_comp66256_c0_seq1
Sequence
(Nucleotide)
GGAAAAATAAAACTACTACTACATCTATGACAAATGACAAAACTGACAAATATTCAACAT
CATAACATTCAAAAGTCAAAATATCGGTCGATATTAGTTTTTCTGAATTAATCGGGACTT
GAAATTATTTTCTTAAATTAACTAAAATAAATGAAGTTATTTAGGGTAAACAGAACTTAA
GGGCTTAAACAAAAAAAATCGGCCTGATCATGTCGGAAGAGAATAAATCAATTCTCCACG
AACTATACGTATATTCGGAATGGAAACCTGAACCAGAATATATTCAAAAACCTGATAACT
TACTACTACCAGAAAACATATCATCTTTATGGAAGTGGCTTAAATTTTTTGGACCCAAGA
AGAATTTAATAGACAGTGTAACTGCTCATAAAGAAAACCACCAAAAGTGGCATATCGCTC
TCGGAGATGAAGGGAAAGTCATTGCTGTGTTAACTGACAATATATTGGAGATTAGAACAA
AGAGATCTGACTATGCTACTATTGCTGCTAGAACTACAGGAATGTTCAAGACCAGAGGGC
TTGGAGTGTTCAGACAACACTCATGCAGTCGCCGACGTTATATTCATGCCACTTAGGGTC
AAAGACACAAAATGGAACTGGGAAGTTCTAATAGTGACATATGACGGTAAACTGCGTGGA
TATTTGGTATCGCAGACAGAAGGGTTCAAAATTCATCATACATTTAAATTCAGTGGAGGT
GTGTCCGCTGTAGCATATAGTGATCGACATTCCACTCTTTACGTTGCTGGAGTACCTAGA
GGTTCAGGAAAGGATCCGTCATCGCCTCTAAGCGCAGGACTCACAGCCTGGCGGATACTA
AATGACGATCCATTCTATAAACTGTCTGTTGTGTCGGACGAGCTCGAGGCGCAGTTGGCA
AATCAAAGATTCCAGCTTTACATTCCATTTGTAACTTCTAAGAATTTAGCATTCATAGTC
CAAATGCAGCTGTCGCCCGACGCGACTAGACTCGTATGTCTGCACTGCAACGGAGACGTC
TCGGTGTGGCGCCTCCCGCTGCTGAAAGCGGAACATCGGTGGCCCTTGGACACTCAACCG
CTGCACGACCTAAGGAATCCGCTGAGCAATGATGATAAACCAACCAAGAAGGACCCGATC
AAATATTACGTGGCTGATGTTAACTGGTGGAGTGGCGAGGAAATAATAGTGTCCAGATTC
AGCGGCGCCGTGTCTGTGTGTCCCATCCAGGACATGATGAACATTCTCGGGAAGAAACCC
GAGTTCTTCCAGGGCGCACCACGGATCACGTGTGCTCACGAGGGAACATTCATGGTGCTG
GAATGCGAGTCTAATGTGTTGCCAGCGAAGAAATCACGAAGTGACGAAAGTATGGAAGTA
GTGTCGACGGATAACGACGAAGAGGATACGATGTTTGAATTAACCAAAGAGCTGTTGAAG
TCTGTGCTGTTCGCGATCACCGATATCGAGACCTTCCAGCCCAAGCCGAAGCGGATAACG
GTCGTCTCCCGGGTGTACCGGCTGCTCGGAGTCAAGAGCACCACGCCCGCCGAACTATTC
TCCAGGAAGATTGAAAGCGGCAAGTACACGGAAGCCTTGGCTTTGGCTGAAGAGTTTGGG
CTGGACAGCGACTTGGTGTATCAGCAGCAGTGGAGGAAGAACCCTGTCTCTACAGAGGCC
ATACAGAAGTACTTGAGCAAAGTGTCTAAGAAGATCTGGGCGGTGCATCAGTGCGTGGAC
CGACTCCCCGAGACGCTACCGGCCGCCAAAGAACTACTGCAATTCGGGATTCAACTTACC
AATGAGAGAATACTTGATGAAATAAATACGAACTCTGAGAACAAGATAGAAGATCCTGAC
AACATAACCCTGGAGCATCTCAACGCGTACACGAGCGAGCTGCTGCGCTGCAGGCACGTC
ATGCTCTTCTACAGAGATCGACTGGCGTTATATGAGGCGATTCTACGCTGTGAGAAATCA
ACGTACGTGAAAGACGAGTACGACCGGCTCCGCAGCAACAGCATCGTGCACAGCGCCGCC
GAGACCGCCAAGGAAGGCCGCGTCGAGGCGCTCACCTGTCTGTGGCCTCAAATCAAAACG
GTCCCCATGCAGCTGGCCGTTCTCGAGAAACTACCAGAGACAATCAACCCCATAGACTAT
CAACATTTGTTACCCACCAAGCAGGTCGTGCAGTGGTTCGAGAAGAAGTCCCCAATTAAA
CTGCCGCCGTCACAGTATGACAACGACTGGTGCCGCAAAGGCATCTTCAGGTCGATATGG
AGTTCCAACTGGTCGGAAGACTGCACTCCCGATGTCGAGACCGTCGCGGATGTCTTAATA
GAAGACGAAGAGTTAGGGAAATGGTACGAAAAGAGAGCGAGGGAGATCGAAGAGAGAAGC
GGCATGGTTTCTCATTCTCTTACTCTTGTGACTATTGCGATGGTCGGCGGCGGCGTTCAA
GGCTTAGACAAAATTATGTTTCACCTCATGACCCTGGACACTCTGGTCTACGATATAAAC
ATCGAAGGGGTAACGCTCAAGCAGCTCGAAGGTCTGCCGCCGCTGGAAATTTGCACGCTG
CTCATGAAAACGTCGACGGCAGAAACGTTCGTGTCGGACTTGAAGCAGTACGTGATCCCG
TACCTGAAGCGCCTGGAGAACAGGTCCAAGGTCAACGACGTCTGCATCAACGGCCTCATC
GATTATCTGGTGCATATAAGCATTGAAGACTTGTCTCCTATACTCCTGGTGTTGCAGTCA
CCGACGGAGTTCGCGCTAGATGTCTGCACTCATTTGGATCTAGTCGAAAAATGTTTCTTC
GCCTACACCGGCACCGACCTGGAGAAAGCGAACGCCCTGCTCGACACTATACCGACAGAG
AGCGACGGCAGCATGTCGACGGCGGCGCTGCAGAGCGCGGCGGGGCGCGTGCGGCGCGCG
TGCGGCGGCT
(2950 bp)

- SilkBase 1999-2023 -