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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoEE_comp65949_c0_seq2
Scaffold_idBomo_Chr17
NCBI non-redundant
(nr)		PREDICTED:_small_subunit_processome_component_20_homolog_[Bombyx_mori]
Ontology
GO:0000447 P endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0000462 P maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0000472 P endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0000480 P endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0006364 P rRNA processing
GO:0008285 P negative regulation of cell population proliferation
GO:0030686 C 90S preribosome
GO:0030688 C preribosome, small subunit precursor
GO:0032040 C small-subunit processome
GO:0044822 F RNA binding
Transcript
Level		FPKM:25.70 TPM:44.82
ORF EntryO_BomoEE12423_complete:A_BomoEE_comp65949_c0_seq2
Sequence
(Nucleotide)
AACACAATATTGCAAATTACCCGATCACAACAATGACGGAGAATTTTAGGTCTAGACACT
AATGCGCATGCACACTTGTCAGTACCCAGGGAGAAAGAGTTAGACTTTCTTTCCTTTACA
GCGGGACGAAAACCGGACTTTCGGCGTCGGTAAGAGAAAAAACCAGTTTTCCTAACAGTT
TTAATAAATTCCCCAGAGCTATAGGTAAAATGACGGACCACGAAGAATCACACAAAGTTA
ACCGGCGTCGGACCGGCTTCGAGAGGCAGGAGGAAGATATGTTGAGGGTTCCGATAGCGT
TGGCGCTGGTGAAGCTGTTGCAGCGGCTGCCAGGCGCTTTGCTGGACAACCACTTACCGG
GTATCATCATAAAACTATGTTCGTTTTTGAAATCACCTTTGAAACAAGTCCGGATATCCG
CTCGGGATATCGTCAAAAAGGTCATGATCACGGTCGGAACGTCATATTTGGGCGTTCTGT
TTGAGCATCTAACTTTGTTGCTCACAAGAGGATTCCAAGTGCACGTATTAGTAGCGACCG
TGCACGCCGTGCTCGACGCTCTGAAGGGGACCTTCGAACCGGGAGACATAAACGCTAACC
TCCATTACATTCTCGACGTTTGCGTCAACGACTTATTCGGGGCGTTATCTGAAGAGAAAG
AGGTGGATAAGTTGCATTATAAAACGCCCGAAGCGAAGCCCAGCAAGAAGAGTTACGTCA
CGCTGGCGATCGTCTCCGAGAACATAACGGAACGCTGCCTTATTAACCTGTTGCTGCCAT
TCAAGGAGGTTCTAGAGAAACACCACTCGAAGAAAATCGTTTCGAAAGTACAAGAGGCGT
TAATGCACATCACTAGCGGTCTGGTATCGAATAGATTCATCGATATCGAATCGTTGTTCG
TGTTTTTACACGGTATAGCTTCGGACAGCATTCCTCAGTTTGTGTTAGGGGCTCCGAAGA
GGGAAATAACGGAGCAGCAGAGGGAGAAGATGCTGAGGGCGAAACCGGACTGCTTTATAG
TGCCCGAAGCACCGAAACGCAACAAGGAGACTCAGGCTAAGAACGTCAAGGTTTCCGGTA
AAGCGAATGCTCACGTCCTAGTTGAATTCAGTCTGAATATACTTCACGTTATATTGAAAC
GGGAGAAAGTACCGAGGGTCGAGTGTAGAGCGTTCGTGGATCCGCTCATCCCCCTACTGG
TTGACGCGATAAAAAGCGACCACGTCAAAGTGACAACCGTGGCCTTAAAGTGTATAGCGA
CGTTGTGGACCATCAGAGTTAGCACGCCTACCCTAGAGGAAATGGTTCAAGACATAGTGA
AGACTATATTCACGATATTGCACAAATACGCCACGTCTGAAATCAGCAAGCAGAATGATA
ACCACAACTTAGTTAGGACGGCTTTTAAGGCTGTAACAGTGTTAATACGCAACGTAAAGT
ACTACAAGCTGGAAGTCGAACAGCTGAAGACGTTGCTGCTGTACGCCGAGGAGGATTGTC
AGAACGAAGAGAAGCAGGCCAACTCGTTCTCATTGTTGAAAGCGATACTGGAATCGAAGC
TGGTATCGCCCGAACTGCACGAAGTCATGGAGAAAATATCAAAGATATGCATTCTGAGCG
TTTCCGCGAAATCACGGGAGGAGGCGCGGGTTATATTCGCGAACTACCTGACGTCGTACA
CGCCCGGGCGCCGCCTCTCCAAGTACGTCGACTTCTTCGTGGCCCAACTCAACTACGAGC
TGCAGCACGGCAGAGAGTCTTCGCTCAAGTTCCTCGAGATGATAATACGAAAACTTCCCG
AATCTCAATTGGCGAAGTTCGGTGACCACTTACTGTTAACGCTGGGCGCTTGCATGGTGA
ACGATCCGGCGCCGGAGTGTCGCGCCGCGGCCGCCGCCTGCATCGAGGCGATGCTCAACC
GACTCTCCCAAATGGAGAGGAACAAGCTATTCGATCTGGTCCTCACTTTCTTCCAGGACA
CTCAGCCCGTTCACTTTGAGCTCGCGGCTCAACTAAGTACACGATTCGTTAACGTAGAAA
AAGACGAATTCAAGAACCGCCTATCGACCGTGCTGCCCCTGGTCAACAGCAAGATGCTCC
TACTCAGCAATGACATAGCGGAGGGGCGCTTCGTCAAAATAAAACTCGACCAATCCGAAG
ACAAAACCGACGAAGAAAAACAACTAGAAAAGGACCACAGCCTCATACAGATCCTAAACT
TAATCGAGAACATCACTGTACATTGCGAGTCGAGTATGAAGAACGAGAGATATTTAAACG
AATACGACGAGATAGGCCAGCAATGTAAAGCGTTTCTTGCCTACCCGCACGCTTGGGTCA
GGTTGAAGGCCGCGAAAATAATTGGGCGAGTTCTGTTAACGGTCGATGTCAAGGAATTGG
ACGATATTGTTTCGAATAAGAAGGAAACTGAGAGGGGATTTATTTATTACGACGTCGAGG
AGACTTTAAGAAGTTTGGTCTTGGATCTTTGCGCGCAGTACACGACCACCATACAGAGAG
ACATGGCGGAACAGGTAACCGCCGTGCTGTTCCAAATAATAAAAATAGTTCAGTCGACGT
CGTGTTTCAAATTAGCGAATAGTATAGAGGGAGAGAACGAACGAACTGAAGGCGGCGGTA
AATTGGACACGCGTTGGATCCTGTTCAAGCTGAGGAAGGCCGTGAACGTGGAGGTCGCCC
GAGCACCGACCTGCATCAATATAAGATCGTCGATATTCTCGATGTGGATCCGCATGGTGG
GCGGCCTGGAGGCGGATGACGTCACGGGCGTACTAGATGTGCTGCTGCCGCCGCTAGTTC
GCGAGCTGTCCACCGGCGACGCGGCGGCGCCAGCGTCGATACCCAAACAACTCGCCCGAC
GACTCGCCCGGAAGATCAGAAGGAAAATAGGAGAGATTGAGTACAGCAAGCTAGCAGCCG
AGGCGCAGACTAGGCTCAACATTAAAAGGGCCGAAAGGAAAAAGTTATTACTACAAGAGA
AAGTCAAAGATCCGGAGAGGGCGGCCAAAAGGAAAGTCCACGTGAAAGAAAAGAAGAAAC
AAGCGAAAAAGATAAAGTTAGACATGGTCCACGGAAAGAGACCGCGCCCCAAGAAACGGA
AAGCAGAAGATTTTGATCTAGAAGACGAATTACTAAAAGATGAAGGATAGAAATGTTACT
GTGCTATGTTCGTTTATGTTTAAGGGATTCGAATCATGTAAATATTAGTTGAGTTTTCAA
ACAATAAAATAAACTTTTAAA
(3261 bp)

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