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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoEE_comp65949_c0_seq1
Scaffold_idBomo_Chr17
NCBI non-redundant
(nr)		PREDICTED:_small_subunit_processome_component_20_homolog_[Bombyx_mori]
Ontology
GO:0000447 P endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0000462 P maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0000472 P endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0000480 P endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0006364 P rRNA processing
GO:0008285 P negative regulation of cell population proliferation
GO:0030686 C 90S preribosome
GO:0030688 C preribosome, small subunit precursor
GO:0032040 C small-subunit processome
GO:0044822 F RNA binding
Transcript
Level		FPKM:8.83 TPM:15.39
ORF EntryO_BomoEE12420_complete:A_BomoEE_comp65949_c0_seq1
Sequence
(Nucleotide)
ATATTGATAAATAGTCAAAAGTCGCTGCGGCCGGTGATAATATTTGGTGCTAGGGTGAGT
AATTTTTTTTACATCCGGATCACTGACATAGTTCCTACAAGTCACTCACTCAGAAGCTAC
ACAACTCTACAATATTCAGTATTGTCAAATTTGTAAATTTGTCAATGTGCTTATGTTTAC
ATTTTGTTGATAAAGAAATGTGGAATTTATTTGAATTACGCTAATTGCACAATTTAATAT
AAAAAATGAAGAGTAAACCTGTTAAACACAAAACTACGAATACTTTTCGATTTGTGCCGT
TTTCTGAGCGAATAAATTCTATTGATATTCGACATGCTGCACTGTACCACATTGAACACG
CTTACAGCAGACAACCAGACGAGAACGAGACACATTTCAATTTGGCGATACAAAAATGGC
ACGTTCTGAACCTAACAGATAATTTTAAAAGGTTTAAGAAGGAGGTCTTTGGAATTATTA
CTGTACCACAACTACTTCATAAGAAAGTCGAAATACTAGAAATTTTGGAAAAATATTTGA
AACTTGAAGATCAATTGTGTTTGCAGCCACTTCTTGAAATTCTTGTAGCTGCTGCTAAAG
ATCTACGAGATGATTTCTATCCACACTTTCCGAAATTCCTTGATGTACTTATAAAATTGC
TAAATACAAAAAATGCAGAACAACTAGAATGGACACTTATATGTTTGGCATTTTTATTCA
AAATCCTGAAACCTTACATGAAAAAGGATATTGCTGTAATATTGAAGAGCATTGTTCCCT
TGCTGAGTGAGAATAAACCTCAGTATATTAATAATTTTGCAGCTGAGAGTTTTGCATTTG
TTGCCCGTGATATAAGGGACAAGAAGAAGTTTATAAATCTAATCTTAACTTATTTAGAAA
ATAATGATGATGTGATAATAGGTTGTGGTCATCTTTTATTTGAAATTATAAGAGGAGTCA
GCGGAAAATTTCACAGCTGCATTGAAACATTTCTACCTATACTACTACAATACTTAAAAG
AAAGCAAAGCACATCAGGATACCCTATTCAAAGTACTCACACAAACTATAGAGGATAGCT
TACACAGCATATCATATAAGGAATTTACTATATTTTGGACATGTATTCTAAAATTTATTG
AAGAAATATTGAAAGAAGGTGATGAAGAAACTAAAGGACTAGAATACATTTTGAGGCTAG
CCGGTCAAGTAATTGAGCATCAGAATGGAAAGTTCTTAATCAACCCACCACAATTTGTTC
TGTTATTGATAAAGGTTATATGTGAGCAGTCATCAGAAATAGTACTTGAAGTTTGTTCCC
AAATTGGGGCAATATTACTACTTTCACCGAATGTATCTTTATCACAGGAACATGCCAGCA
TCATTGTTAAAGTATTATTGCCTTTGCCATTCCCAAATATCTTAACGAAATTCGTTCAAA
ATGTGATTGATTATTCTCAGTTTGATATGCACATATTGCCACCTTTTATCAAATACGTTG
TCCAATCCGGATTTGACAATGACGCAATGTGCACTTTGAGTAAGATCTGTGTCAAAAAAT
CTCCTCTATCAATGAATGGAATCAAATTGTTTGAATGGGTTAAATATCCTATTGATTTCG
GTCCCAATCTTTCAAAATTCATGGAATATTTTGAAACTGTTATGAATGGTAACACTGAAC
AAATGTTGGAGAACCCATTAAAATTAGCGAATGTTTTGTTCTGTGTGCCGCATGTTAAAA
ACATCGATGTGGATTATTGTATAAAAACATTGAGTGAATTAATTTCTAAACTGTTAAAGA
TATTACTTTCTTACAATTTGGAAAGTCAACTGGACGCAAACAGATTTCACTGTGATAACA
CAGCATTATCGCGATGTGCCAGAAATATTATATTCATAGTAGCAAATTGTATAGAAAGCG
CTGTTCACATATCCAGCTGTAAGAAAGTGGCAGAGATATGTGATATAGAAAGATTATTAC
CCATCATTCTGCCATGCGCGGCCGATCCAAACTATCTGGGTGCACTGCATTTGCTTGACT
TGTATCTAACGGCATACGAACATGAAAACGGACTAAGCTATCCATTTCTATCTTTGGTCG
ACTCTTATTTGAGAGTCAACGTGTCGTCGCCATTTCATATTGTGCGCCTTTTGACAACAC
ACATATATAAATTATTCGAAAATATAGAAGAATTGTGTAAGTCAGCAGAGATCAATGGTA
ACGTTGAAAGATTTTCAGTATTCAGTATGTGTTATGCTGTGGAATCAATAACACCTTCCA
TACAAGAATACAGAACTCAAATAAACATTCTACACAAAATGGCGTTTAACACGACACAGT
ATGCTTTGGCGAAGGAAACAAATTTTCATCTGTTTGCCCTTGATTATATGTTAGGGGTTT
TGTATATGAATTTTAAGTTAATATGGGAGCCAGTCGCTGAATTTGTAGCTGGCTACGGTA
ATGCTTTAAGCGTTGACGAATTCTGGCCAACATTTTATAGAGCACTGCAAACTTCATTCG
TCAATGCAAAAAAGAATCTAAAACAATTTCAGTTTGATTCCGAAATCGACACCAGCTCCG
TAACACTAAATGGATTGTATAGTGAATATAATAGCATAACTGAAAGGCCAGATCTATATA
ACTATAGAAATCTGATATTAAAAGTAATGACGAACTGTATCCAAGCGTGCGAAGCAAGAA
ATCGTGATGTGGTTGTATTATTTTTAAACTTTATCGACGAAGAGTATAGAAGAGATGATA
AAACAAATGCCTTAAAAATAGATGTTGCAAAACATGATGTTATAATGGAAGTCGACAACG
GAACTGAAGAAGAAAACGTTGAAAACATTGAAGAAATTATTGAACAAATTGACGATCAAA
CAGAATCGGTTTCAGGAAAAATAATATTCAAGACTCTTATAAATATAATGCAAGTACTAG
CACAGTTCAAGAATCCAAGGGCTTTACATAAAGAGCCAGTATTCTGGGAACTTTACATGG
AGTTTTTGAAACACAAAAATCCCGGCCTACAAAAGTTTGCTCTAGATTGTGTCCTTAATT
ACAAAAATAAAAGTATTACAGTGTACAAAAGTAATTTGTACAATTTGATCGATGAAAAGA
AATTCAAAGATGAACTAACACAATTCAAAATCACTGAAGATTCGCAATTGATACACAGTG
ACGATAGAGAGCATGTGATACCAATTATACTGAGAATACTTTACGGGAAAATGACGTGTA
AACTTGCTGGTGATAAGAAAAGTGGCGGACAGGCTAGACGATCTCTAGTGATGCGATATT
TGGCCGGCTGTAGTGAAAACGAACTTAGAATGTTCATCGAAATGGCGTTTAGTTACTTCA
AGAAATATATGGCTATGGAGCCTAGAGAAATATTTGAAAATATTCACAATAATCTTGATT
TGAAATCAATTACCGGCCCAGGAAAGTTGCACAGCATTTTGAATCTATTCGAAGTGGTTC
GTGAATATTTTGGCGGTTACATGAAAGACGAACTTTTATCGGAGCTATTCAAGATCTTTT
ATGCCGTCTGTTCGACTTTTTCAGCTGTTTTATCGAGGGCTGATAAAGTTCATGTTGGTT
ACGTTAAAGTTATGAAAAATCTCCGAACCATTGCTCTTGTAACAGTGAAAAAGCTTTTCG
AACAATTAGACAAATATCCTTGGAGTAAAGATGAGTTGTATGTTATATTTGAAACTTTGC
TGTGGCCTTTGATCCCAAAGCTACATATCGAAGGAATACATAGTCCGACAGCTCTCTTAA
AACTTTTAAGCGTATGGTGTCAAAATCCACGATACTATGTATTACTAGTTACTCGCTCGA
AGGATAACTCTTTAAGTTCATTACCAGAGTTGCTTAAACTTCTACTGGCTCCAAAAACAA
GTCCGATTGTCGTTAATATGATTTTAGATATGATTGAGAAATTATTAACACTAACTGAGA
ATGAAGAAGACAAGGAATTAAGTCCCATTGAATCTTTTAATATTATACCAAATGACGAAA
TAGTATCAACCGATATGAGTAACATTAATTACGGAAGCAAAATATTAATACCGCACATTC
CAAGCATTTTGGAAGTAATGAAAAGGCGCATGGCGAATGCAGCGAAGTCGAACACGGTTA
ATAAAAGAGACCTCTTGATACTGTCACGAGTGACCGAACTGGTGGCAAACCCTGAAATCT
GTGATGAACTATTAACTTTATTATTGCCGATATTAGTAAAGAAAGTTTGTATGAACATGG
CTGAAGAAAATATGGAACATGCCGTAACCACAATTATTAACTTGTTGGGACACAGTACTA
ACCCGCAATCTTACATCAAACATATTGCCGTATTATTCAATAAGGTCAACCAAATTGATG
TAAGGAAGCTCCTGATTAAGCTTCTGCAGTCCATAGCAGAAGCGGCTCCAAAAAATAAAG
AGACCCTGAAAAGAATGGCTGAAATTATAAGTGAAATGAATGCTTTTAATAAAAGATGGA
TAGAACAACCAGATTTTGACAGGAGATTAGATGCTTACAAGCGAATTTATCAACTGGCAG
ATAATGATGAAATTGATATTGATCTTGCTATTCTAATTGTAAACAATTGCTTTTATTTTA
TTCGAACGGAAAAAGATATCGGTTTGAGAGATAGCGCTGGACTATGTATGAAAAAGATAC
TACCGAAATTGCTTATGAAATACAGATCGGCGAATGAAGGACAATTTCTAATCCGTGACA
CAGTTCTTTCATTAATTTCGACTGGAATAAGGGATACGAAGAATGATTTGGTTCGTAATG
AATCTATAGCCTTGCTCGGCGAGCTAGCTAGGGAGTGCCCTGAAGCTGATGTAGTGATCT
CAGATTTAGCGACATTGACAAACAAAGATGACGTCGAAGTAGATTTCTTTGAGAACATGT
GTCATTTGCAGATGCATAGACGCGTTAGAGCCCTATTGAAATTTTCCAAAGTTTCCAAGA
AAGTAATGAAATGTCCCGCACCAAGAACTCTTACCAATTTCATATTGCCATTAGCCACAA
CGTATTTATGTGACGATAAATATACAGACAAAAATACATTGATAGATGCGGCCATTGATG
TTGTTGCAACGTGCTGTAGGCTCCTGCCTTGGTACCATTATGAGGTCATTTTAAAGGTAT
ACTTGAACAAAATGCGGCACTCAACCGAGCACCAGAAACAGCTGACGCGGATCATCATCG
GAATCATAGACGCTTTTCATTTTGATTTTTCGAAAGCGAAAAACATTGATCTCCCAAAAG
CACTAGTTGTTAATATGAAAACTAAATTAACCATTAAAGATCCGCTTAGAAAAGTACAAG
TCAAAGATGCAGAGTCCAATGAAATCGACGAAGAAAATGATAGTGAAGGTTGCGTAAAAG
ATAAAGAAGACTCAATGGACGATAACGATATAGAAGTTGAACTCAAAGTCGCAGATGATG
AAGCAGCGAATGAAGAAGATTCTAAAGAAATAACGAATGTACCAGCTTACGAAAGAATCA
CGAGCGTGTCACCTTCCGTTGCTAAGAGGATAGTAAAATCGTTGACAGCGGGCCTCCTAC
CTCAGTTGAACAGAGCTATAGGTAAAATGACGGACCACGAAGAATCACACAAAGTTAACC
GGCGTCGGACCGGCTTCGAGAGGCAGGAGGAAGATATGTTGAGGGTTCCGATAGCGTTGG
CGCTGGTGAAGCTGTTGCAGCGGCTGCCAGGCGCTTTGCTGGACAACCACTTACCGGGTA
TCATCATAAAACTATGTTCGTTTTTGAAATCACCTTTGAAACAAGTCCGGATATCCGCTC
GGGATATCGTCAAAAAGGTCATGATCACGGTCGGAACGTCATATTTGGGCGTTCTGTTTG
AGCATCTAACTTTGTTGCTCACAAGAGGATTCCAAGTGCACGTATTAGTAGCGACCGTGC
ACGCCGTGCTCGACGCTCTGAAGGGGACCTTCGAACCGGGAGACATAAACGCTAACCTCC
ATTACATTCTCGACGTTTGCGTCAACGACTTATTCGGGGCGTTATCTGAAGAGAAAGAGG
TGGATAAGTTGCATTATAAAACGCCCGAAGCGAAGCCCAGCAAGAAGAGTTACGTCACGC
TGGCGATCGTCTCCGAGAACATAACGGAACGCTGCCTTATTAACCTGTTGCTGCCATTCA
AGGAGGTTCTAGAGAAACACCACTCGAAGAAAATCGTTTCGAAAGTACAAGAGGCGTTAA
TGCACATCACTAGCGGTCTGGTATCGAATAGATTCATCGATATCGAATCGTTGTTCGTGT
TTTTACACGGTATAGCTTCGGACAGCATTCCTCAGTTTGTGTTAGGGGCTCCGAAGAGGG
AAATAACGGAGCAGCAGAGGGAGAAGATGCTGAGGGCGAAACCGGACTGCTTTATAGTGC
CCGAAGCACCGAAACGCAACAAGGAGACTCAGGCTAAGAACGTCAAGGTTTCCGGTAAAG
CGAATGCTCACGTCCTAGTTGAATTCAGTCTGAATATACTTCACGTTATATTGAAACGGG
AGAAAGTACCGAGGGTCGAGTGTAGAGCGTTCGTGGATCCGCTCATCCCCCTACTGGTTG
ACGCGATAAAAAGCGACCACGTCAAAGTGACAACCGTGGCCTTAAAGTGTATAGCGACGT
TGTGGACCATCAGAGTTAGCACGCCTACCCTAGAGGAAATGGTTCAAGACATAGTGAAGA
CTATATTCACGATATTGCACAAATACGCCACGTCTGAAATCAGCAAGCAGAATGATAACC
ACAACTTAGTTAGGACGGCTTTTAAGGCTGTAACAGTGTTAATACGCAACGTAAAGTACT
ACAAGCTGGAAGTCGAACAGCTGAAGACGTTGCTGCTGTACGCCGAGGAGGATTGTCAGA
ACGAAGAGAAGCAGGCCAACTCGTTCTCATTGTTGAAAGCGATACTGGAATCGAAGCTGG
TATCGCCCGAACTGCACGAAGTCATGGAGAAAATATCAAAGATATGCATTCTGAGCGTTT
CCGCGAAATCACGGGAGGAGGCGCGGGTTATATTCGCGAACTACCTGACGTCGTACACGC
CCGGGCGCCGCCTCTCCAAGTACGTCGACTTCTTCGTGGCCCAACTCAACTACGAGCTGC
AGCACGGCAGAGAGTCTTCGCTCAAGTTCCTCGAGATGATAATACGAAAACTTCCCGAAT
CTCAATTGGCGAAGTTCGGTGACCACTTACTGTTAACGCTGGGCGCTTGCATGGTGAACG
ATCCGGCGCCGGAGTGTCGCGCCGCGGCCGCCGCCTGCATCGAGGCGATGCTCAACCGAC
TCTCCCAAATGGAGAGGAACAAGCTATTCGATCTGGTCCTCACTTTCTTCCAGGACACTC
AGCCCGTTCACTTTGAGCTCGCGGCTCAACTAAGTACACGATTCGTTAACGTAGAAAAAG
ACGAATTCAAGAACCGCCTATCGACCGTGCTGCCCCTGGTCAACAGCAAGATGCTCCTAC
TCAGCAATGACATAGCGGAGGGGCGCTTCGTCAAAATAAAACTCGACCAATCCGAAGACA
AAACCGACGAAGAAAAACAACTAGAAAAGGACCACAGCCTCATACAGATCCTAAACTTAA
TCGAGAACATCACTGTACATTGCGAGTCGAGTATGAAGAACGAGAGATATTTAAACGAAT
ACGACGAGATAGGCCAGCAATGTAAAGCGTTTCTTGCCTACCCGCACGCTTGGGTCAGGT
TGAAGGCCGCGAAAATAATTGGGCGAGTTCTGTTAACGGTCGATGTCAAGGAATTGGACG
ATATTGTTTCGAATAAGAAGGAAACTGAGAGGGGATTTATTTATTACGACGTCGAGGAGA
CTTTAAGAAGTTTGGTCTTGGATCTTTGCGCGCAGTACACGACCACCATACAGAGAGACA
TGGCGGAACAGGTAACCGCCGTGCTGTTCCAAATAATAAAAATAGTTCAGTCGACGTCGT
GTTTCAAATTAGCGAATAGTATAGAGGGAGAGAACGAACGAACTGAAGGCGGCGGTAAAT
TGGACACGCGTTGGATCCTGTTCAAGCTGAGGAAGGCCGTGAACGTGGAGGTCGCCCGAG
CACCGACCTGCATCAATATAAGATCGTCGATATTCTCGATGTGGATCCGCATGGTGGGCG
GCCTGGAGGCGGATGACGTCACGGGCGTACTAGATGTGCTGCTGCCGCCGCTAGTTCGCG
AGCTGTCCACCGGCGACGCGGCGGCGCCAGCGTCGATACCCAAACAACTCGCCCGACGAC
TCGCCCGGAAGATCAGAAGGAAAATAGGAGAGATTGAGTACAGCAAGCTAGCAGCCGAGG
CGCAGACTAGGCTCAACATTAAAAGGGCCGAAAGGAAAAAGTTATTACTACAAGAGAAAG
TCAAAGATCCGGAGAGGGCGGCCAAAAGGAAAGTCCACGTGAAAGAAAAGAAGAAACAAG
CGAAAAAGATAAAGTTAGACATGGTCCACGGAAAGAGACCGCGCCCCAAGAAACGGAAAG
CAGAAGATTTTGATCTAGAAGACGAATTACTAAAAGATGAAGGATAGAAATGTTACTGTG
CTATGTTCGTTTATGTTTAAGGGATTCGAATCATGTAAATATTAGTTGAGTTTTCAAACA
ATAAAATAAACTTTTAAA
(8658 bp)

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