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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoEE_comp65430_c1_seq5
Scaffold_idBomo_Chr11
NCBI non-redundant
(nr)		PREDICTED:_mismatch_repair_endonuclease_PMS2_isoform_X1_[Bombyx_mori]
Ontology
GO:0003677 F DNA binding
GO:0003697 F single-stranded DNA binding
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0006281 P DNA repair
GO:0006298 P mismatch repair
GO:0006974 P cellular response to DNA damage stimulus
GO:0007126 P meiotic cell cycle
GO:0015630 C microtubule cytoskeleton
GO:0016446 P somatic hypermutation of immunoglobulin genes
GO:0016447 P somatic recombination of immunoglobulin gene segments
GO:0016787 F hydrolase activity
GO:0016887 F ATP hydrolysis activity
GO:0030983 F mismatched DNA binding
GO:0032138 F single base insertion or deletion binding
GO:0032300 C mismatch repair complex
GO:0032389 C MutLalpha complex
GO:0032407 F MutSalpha complex binding
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
Transcript
Level		FPKM:2.71 TPM:4.72
ORF EntryO_BomoEE11835_complete:A_BomoEE_comp65430_c1_seq5
Sequence
(Nucleotide)
GATATCTTTGCCTTTCCATTTGGACAAAGAAAATTACTACTGCTTGAATCAAAAATAAAC
AAAACTTAGAAAACTGAAAATTAATTAAAGACCTTTACATACTTTATACTTAAACATAAC
TCATACATATCTCAATGTAGTCTTTGATTCTGCTTTTTGCTGGCTTATATCGTTGTATAC
TTTTAAGTACATAGTTAAATTAATAGAAATAATAGACACTCCATAGTAGTCCATAGTTAC
GAAGACCAAATTCCTCTCATGTAAATAGTCATAGTCGTATATAAGCAATTTCTTAAAACA
TTTGTAAGATGGACAATTTAGGTACACCTTCAAGTGATATAAAACCCATAAATGAAAATA
CTGTTCATAAAATTTGTTCGGGACAGGTAGTTTTGAACTTGGCTGTAGCAGTTAAGGAAT
TAGTGGAAAATTCACTGGATGCAGGAGCTACCAAAATTGATATTAGATGCAAGAATTATG
GTATGGATAGCATTGAAGTTTCAGACAATGGTTCAGGAGTTAATGAAGATAATTTTGCAG
CATTGACCTTAAAATATCATACATCAAAATTGAGTGACTACTCAGATTTGCTTGGAGTAT
CAAGTTTTGGTTTTAGAGGTGAAGCTCTTAGTTCACTTTGTGCTTTGGCAAATCTGACTG
TAACTACCAGGCATAAAAATTCCAATTATGCAATTAAAATAGAATACGATCTTAAAGGTA
ACATTGTAAAGACAACACCATGTTCTAGGCAAATTGGAACAACCGTTACTTGTACAAATC
TGTTTCATTCCTTGCCAGTGAGACAAAAGGAATTTCATAACAATGTAAAAAGAGAATTCA
ACAAAATGACGCATTTACTATATGCATACTGTTTAATTTCAATAGGTGTTAAAATTACGT
GTACGAATCAGGCATCTTCCAATACAAAATCTGTAGTAGTTGAAACGCATGGCTCCTCGT
ATAAAGACAACATTGCCAGTATATTTGGTCTTAAACAACTACAGACAATAATCGAAATAA
AACCCGAATACACTCAAAACATAAAAGATAATATTTTTAAAGGTCTATCTAGTGAAGTAG
CTCATGATCAACAAAGTTTTGTCATCGAAGATGTGGACATTAACCTATCAGAAGATTCCA
ACGACAACGAGTCTGAAGCTATTGCAAAAGATGAAATTAAATCACAAGGATATAAAAACA
TTGTTAAACCGTTTGAATTTATAGGTTTTGTATCTTCGTGTGAACATGGGCGTGGTAGAT
CTAGTACAGACAGACAGTTCTTCTTCGTAAATAACAGGCCTTGTGAACCAATTAAAATAA
CTAAACTCATAAATGAAGTTTACAGACAATACAATCCAAACCAATATCCTTTTGTTTTTC
TGAATGTTAATGTTGAAAGATCGTCTGTAGACATAAATCTAACGCCGGATAAAAGAAAAT
TATTTTTAACCAAAGAGAAAAATATATTGGACGTTTTAAAAGTTTCTTTACTTAAGTTAT
TTGAAAGTATACCGCGGACATTGAAAGTAGACTCTTCCCAAAATGTTTCTATTTCGAAAG
ATCATAAACCAGAATTAGATCAACCGAGAATTTTTACGTCTTTCCTGCAACAATTCGATA
AAAAATCAAAGCTTTGTGATCCTATTTCAAAAAGGGAAGATTTAAATAAAGTTGATTTAA
AAAGAAAATCTACAGCAATTACTGACTACATTACTATGAAAAGTAAAAGACTAGAACAAC
CCTGTTCAAGTATTAATGAATCAAAATTGATGTCCAGTGATATTAATACCAATGAATTGC
TTGATTCAGAAGAGATCCCTCAAGTCCCTATGAAATCTGAGGGGCGCAGTGATGACAAAA
ATGTTACAGAATTAATACCTCGACCAACAAATATAGAAACGCCGATAATTATATCTGACC
AAATTAAATCTGAAGAAACTGAAATCACAGAGGAAAAAGAGATTATATATTTAGACTATT
GCAACGAAATGCCAAATACACAGATAAAACAGTTATCAGAACAAGTTGTAGAGCAAACTT
ATACCATTAACTGCAAAACAAAAACAAAACCTAAGATACATTTACCACCGGGATCTAAAA
AAACCTCCGAAAGCTACAATAAAGTTTTAACGGTGACAGACAAAGAAGACTTAGGTAAGA
ACCACAGGAGATCAGTAATTTTAAAAACTTCTTTGCAGCATGTCCAGGCTTTAACAGAAA
TTTATAATAGAAATAATGAAAGGATATTACCTACTAAAGTGAAATTTAAAAGCGCCATTA
ATCCAGTATTCAATAAAAAATGTGAAGAAGAATTGATACGAGAAATATCTAAGGATTCAT
TTAAGAAGATGCATATTGTGGGGCAATTTAATTTGGGTTTCATAATAACACAACTAGAAG
ATGATCTTTTTGTAATAGACCAACATGCTACTGATGAGATTTATAATTTTGAAACCTTAC
AGCGTACAACAGAACTAACCAGTCAAAAATTGGTGATCCCACAACAACTAGAGTTAACAG
GTGTAAACGAAGAAATACTAATGGACAACATAGATATTTTCAAAAAGAACGGTTTTACAT
TTGAAGTAAATAAGGAGGCATTGCCAACGAAACGTGTAAAACTTTTGACTATACCAATGT
CGAAAAATTGGTTATTTGGAAAGGAAGATATCGAAGAAATGCTCTTTATGTTAAGGGAAG
CTCCGACCGAACATTGCAGGCCGAGTAGAGTAAGAGCAATGTTCGCATCGAGAGCTTGCA
GAAAGTCTGTCATGATTGGCACAGCTTTGAAAAAATCCGACATGAGAACGCTGGTCGACC
ATATGGCAGAAATTGATAAGCCGTGGAACTGTCCACATGGACGCCCCACCATAAGGCATT
TGGTCAACTTAGCTATGGTCCAAACTGAGTACAGCAGTGGATATAAATTTTGAGAACTTC
AGTTTTATTTTAGTATTATTTCTATCAAAAATCATGGAAGATCGTTTTGATAAAGATTTT
TTTTTAAGAAATAAAGACTTAAATTTTGTATGATTTATTTAA
(3042 bp)

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