SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoEE_comp65385_c0_seq1
Scaffold_idBomo_Chr11
NCBI non-redundant
(nr)		PREDICTED:_transcription_initiation_factor_IIA_subunit_1_[Amyelois_transitella]
Ontology
GO:0001094 F TFIID-class transcription factor complex binding
GO:0001128 F obsolete RNA polymerase II transcription coactivator activity involved in preinitiation complex assembly
GO:0001129 F obsolete RNA polymerase II transcription factor activity, TBP-class protein binding, involved in preinitiation complex assembly
GO:0005634 C nucleus
GO:0005672 C transcription factor TFIIA complex
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0006367 P transcription initiation from RNA polymerase II promoter
GO:0017025 F TBP-class protein binding
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0051123 P RNA polymerase II preinitiation complex assembly
Transcript
Level		FPKM:33.82 TPM:58.99
ORF EntryO_BomoEE11757_complete:A_BomoEE_comp65385_c0_seq1
Sequence
(Nucleotide)
GCTATTTCTCGTACTCATAACGCATGCGCCATCTTTGTCGTCGTTCAATGTCGGAATCAA
CGAACCATAGACAATTATTTCTTTAAAGGCTACGAAATATTTCCTCTGTTTGTAGGTTAT
GTTTGAGTGATCAATTGTCAAAATTTTTATGGTGAATTTATAAATTTGTCTCTCTTTATG
TAAATGGACGTCATAAAAGTTAAAATAAGCTATTTTAGCCACATATTATCTTAAATATAT
AAAATTGGTCATCAACATTAGTGAATTAACAAACTGTGTGAATTCCAGAAATTTGACATT
GAAATGTTGCGATGTGAACTCAGAAGACAAATAATCGGCTCTAAACTAAACTAAACAGAT
TTAGAAACAAGAATATCTAGTTCTGTGAACATTTTACACTGTTAAACAATTTTCAACTAC
AGCTCGATTGCAAAATGACAACGAGTCAGCTCGCAGTATTGAAACTTTACAACATAGTGG
TAGACGACGTGATATCCGGAGTGAGAAATTCTTTCTTAGATGACGGTGTAGACGAACAAG
TGTTACAAGAACTAAAACAACTATGGAAGACAAAGCTTCAAGCCAGTGGAGCCACGGACC
CGTTACAACCTGAGCCGATGCTGCCACCTCCTCCAGTGTTACAGAATTTCCAAAAAGTAA
ATGGTAGTAATGTAGTGCATAAAAGAACTGACATGGGACATACTTCGGGGCAACAAGAAC
ATAGTGCACCAGCATCTAGTGTAGCTGGAACGCATACTCATCATATTCTAGACCCTAATA
ATAAAGTGCCAGTTCAGCTTACATTACCTGCTCAACCTGGAGTTCCAGGGTCCCAGCCTC
GTTCATTTACCATTCAAATTCCAGCATCAGCTCTGAACGGCAACAAACTGCATCAGGTCT
TAACAGGTCCTATAATAAATGCTACCATTAGCCTTCCACAACCTCTAGCTGCTACTTTAC
TGCAACAACATATCAACTCGGCTTTAGCAGGACAAAAAAGTGATTTTGATAGCGGCGGAG
GCGGCCGCAGTGGAACTGCTCCTTTCTCTTTAGATGGTGCTTTGGACTCTTCTGATGATG
ATGGCTCAAACGTAGGTGATGGTTCAGAAGACGGTGCAGCAGATGATGATGATGATGACG
ATTCTCCCGAAGAGCGGGCAGAAGAAGAAGAAGAAGAACAAAATGAAAGTGGTGGTGCTG
AAGAAGAACCCCTAAATTCCGGTGATGATGTATCTGATGAGGAGCCAGGGGACATGTTTG
ATACTGATAATGTAGTTGTTTGCCAATATGATAAAATTACACGCAGTCGCAATAGGTGGA
AGTTCTATCTCAAAGATGGAATCATGAATCTAGCTGGAAAGGATTATGTATTCCAAAAGG
CTAATGGTGATGCGGAATGGTGATTATAGACAGTGTGTATTTTATAGAAAATTATTTGTT
ATATCTCGGAATTAGGGCTTAAGGTCTCATAATTATTATTTCGTTATTTCGACATGTAAT
TTGATGTCTGTATGGCAGATATCTGTGTAACAAGATTACGATAAGATTGTTAAACAAATT
ATGAAAAAAAAAACAATCTTTAGTAGGTAGATTTGAAGTTTTCTAAGACACTAGTATTAC
CAATAGTAAAAAACTCTACCAAGCTCCTTCAGTCTCACTTCCCATTAGTGTTTTTTGTAC
ACTACTGAGACTACTACTTACTACTAAACTTACAAAAAAAAAACAAAAAAATCTAAATGA
AAGATATTTATGTGACTTTGTGCTTCTAATATCGAGATACATATCTTGACTTATTGGGTA
TTAATAATGTACAATACAAAAGAAGTTTGTGAATAATTTTGTTATCTCTTAAGTTGATGC
TCTTTAATTTAAATGCCACCATTAAAATTACAATAAATGTGACCCATGTTTTTTTTTTTA
TAATATTGAAAATGTCCTTAATTTCATTTGTTTTCACAAAAAATATAATACAATAATAAA
CAAACAACTTTTAAATCTAATGAAAATGAGTTAAATTTCCTCTTTAAAAATGAAAAAAAT
ATTTATTACAGAGTATATTAGATCAAAGATAATTTAAATATCAAACAAATAGTCCTTATT
AGAAACAAACAATTAATTTGGTTTTTTTTTTATTTCTACATTTCAACAATGGGCAAGGAC
TGCAAGGGCATGATACTTTAAAATGTAATTATTTCTAATATAATAATATTATAGATAATG
TTTAGGGGGTTTTATTTTAATAACGAATTAAATCTAACTCATAATATTAAGACTTAAAAG
GAAAAATAACTACACACAAACTCATATGAAAGCTATTTTTACAGAAGAAGAGTCATCATG
TTTCTAATGTAAAAAAAATC
(2360 bp)

- SilkBase 1999-2023 -