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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoEE_comp65177_c0_seq4
Scaffold_idBomo_Chr24
NCBI non-redundant
(nr)		PREDICTED:_LOW_QUALITY_PROTEIN:_E3_ubiquitin-protein_ligase_RFWD2-like_[Papilio_machaon]
Ontology
GO:0000139 C Golgi membrane
GO:0004842 F ubiquitin-protein transferase activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005813 C centrosome
GO:0005829 C cytosol
GO:0005925 C focal adhesion
GO:0008270 F zinc ion binding
GO:0010212 P response to ionizing radiation
GO:0016567 P protein ubiquitination
GO:0016607 C nuclear speck
GO:0016874 F ligase activity
GO:0032436 P positive regulation of proteasomal ubiquitin-dependent protein catabolic process
GO:0046872 F metal ion binding
GO:0061630 F ubiquitin protein ligase activity
Transcript
Level		FPKM:2.33 TPM:4.06
ORF EntryO_BomoEE11573_5prime_partial:A_BomoEE_comp65177_c0_seq4
Sequence
(Nucleotide)
TTTTTTTTTTTTTTTTTTTTAACACTGAATAATCAACTTTATTCCGTTCACATAGGGCTC
ATGTTTACATACACACACACAAATACAAAACGACTTCACTGATTAACATCTATAATTTTC
ATTAAAATTAAAACTTCATAAACTAACTGTTGGGTGTCTCTGTCGCGCGCGGGGCGGGAG
CGGGGGTGCGGGAGGGAGGGCTGCCGAGGGAACTGACCCGTGCACAATTTTACTCTTTAC
ATCTATGAGCACACGGTGCATTATATCTTGAATGTGTATTCGATTTTACTTTAAATAATC
TTACTTGAGAATAACTACATTTTATCATTTCCGCCTGTTAACGAAGATTGCAGATTCCCG
GTTCAATACAATCCCGGATTGTAAACTAATTTGTGAATAATACGGATTGTAAAAAATTAA
TGTAAATAGTTTTCAGGGTTTTTTCTCCGGTGTGGGCTCTCTCCCGCAGGTAGGAGGGGG
TTGGGGGGAGGGGTTGTCAGACGAGCTCGAGGACCTTGATGGTGCCGTGGCTGTTGGCGG
CGAGGAGGGCGGGGCGGGAGGCCGCCCTCCTCCAGCAGACGGCGGAGACGAACTCTGCGG
GCTCCTCGTCGCGGCGGTCGCGCTCGAGGAGGGGGCGCGCGGGGTCGAACCTGTAGGCGA
GGCAGGGGCGCGCCAGGCCGCTGTGGTACACGTAGAGCGCGTTGTTCTCCGAGCCGCACG
CCACGTAGCGGCCGTCGGTGGCCAGCCCCACAAAGTTCTTCTCGTTGGTGTGTCCGGTGA
AGGAGCGCACGCAGCGCGGGGACTCCACGCGCCACAGCTTGAGCTGCGAGTCCGTGGAGG
CGGACACCAGCGTGCCGCCGTCCAGGAACTTCACGTACGAGACCGCCTTGCGGTGGTCCC
GGAACACGGCCAGCGGCGCGCGCGGCGAGCGCAGGTCGTAGTAGTGCACGCAGTGGTCTG
CGGAGCCGAAGGCCAGGTGGCAGGACGAGTTGGGGTTGAAGCGCACGCAGCACACGTTGA
ACTTGGCCTCGAGCGTGGCGACGGACTTCTCCTGGTTGAGCGCCCACAGCTTGACGCGCG
CGTCGTCGGAGCCCGAGGCCAGCAGGCGCACGTCGGCGCGGTTGAAGTGCACGGACCAGG
CGCGCTTGTCGTGCTCCTGCAGCGCGCGCGTGCGCACCGCCGTGCCCGCGTCCCACACCG
ACACCGTGCCCTCGTAGTCCGACGACGCCAGCACGTGCTTGTGGTACTTGTTCCACGACA
CGCACGAGATCTTGTGCGAGCACTGCATCTCTGCGCACGGGTAGTGCACGTCCACCGCGT
CGCGCACCACCGACTCGAACTCGAACACCTTGATCCTCTTGGTGACGCCGGCGATCGCGA
AGAACTCCTCGTCCTTGTCGAACTCGATGGTGGACACGATCGTGGAGTAGTTGATGGCGT
CGCTGCAGTACGACAGCGTGGCCAGCGGCCGTAGCGTCCTGCACCAGACGGACACATTAG
CACTGCACTCCCGACCGGCTGACGGACAGGGCAGACAGAGTACCTGTAGGCGGTGAAAGC
GACCAGGTCGTCCCGGAAGGCGTCGAGTCCGGCGCGGGCTCGAGTGGAGCCGGCCTCCTC
CATCTCCACGGAGTCCTCGACCGCCACGCCCGCCACCGGCGCCCGCTGGTCCGACGGACC
CGGTGCAGGAGTTGGTTGCGGGTCGCACACCGGACCCTGCGGCACGTGGTCCGCCTCGCA
CGTGTACGGGGCCGCCGAGGAGGGCACGGGGGTCACGGTGGGGGGTGCGGGGTAGGCGGG
GACGGCGGGGGACGCGGGGGTCAGCGACCCCGACCCCGGGAAGTACAGCTCGTCAGCGCG
GTGCGCGAAGTAACACTGCACGAAGTCGTCGAAGTGTTGCGTGAGCTTCCTCCAGCGCGC
GGCCAGGGCGTCCCCCCCGCCCCCCGCGCCGCCCGCGAAGCTCTCCTCCTCCGAGCACAC
CGCGCCCGCGCTACCGTCAACATTGCTGGCCGTGTCTGCGAGGTTCCCGGCTATATCGGC
GATCTCTTTCCTGAGCGCAGTGACGGCGTCTGGGCGGGGGTCCGCGCCGCCGGGGGGCGA
GGCCCCGCGCGCTATCCCCACTGCACCCGTGCGGAGTTCCTTCAGCACTCCGGCGACGTA
CTCCATGTCCTTGTGCACGAGGGCGGCCTCCCTGGCGAGCTGCTGCAGCTGGTGGGTGCG
GTGGCGGTGCAGGTGCGCCAGGAACTCGTACAGTAGCCGGTGCTGCGCCGCCGCGCACTC
CGCCTCCAGCAGTCTCTTCCGTCTGTTGAGCAGTTCCAACATGGAATCCACCTCGGTGAG
GTCGAGGTGTCGCGACTCCGCGGCGAGCAGCGAGCGCAGCCGGGCTCCCTCGCCGGCCGG
GCCCGACCGGGACGACGCCCTCGACCGGAGCCGGCGCTTCGTCACGAGTTCATTGAGCAG
GAAGTTGGGGAAGATGTGTTCTCTGGTGAGCAGGGGCGCTCCGCACTTGGGACAGCGCCG
GTGCAGGTCGAGCGCGCGGCTGATGCACGCGTAGCAGAACGAGTGGCCGCAGCGCGTCAC
ATAGGCCTCGTCGATCAGCTCGAAGCACACCGGGCACAGGAGCTCACAGTCCTTATCCTC
AAGTGAGCCGCCAAGTCCTCCGAGAGTGGTGGCCGTGCCAGAGCCTGCACTGCTGGCTGC
GGCACCCGACATTCCTATAAATACGATGTTGTTTAATTAAAATCACCGAAGATGCATCGC
TCGATGGTTACTGTTCTTCTCTTGTTTTCAACGAACACAGAAGCACAAGTTAACGAAGCT
TTATTGCACAGTTGTGACTTAATGGAACTTAACGTTAGAAACAATTTTAAGAGTCTTTGA
GTATTTAGTAACATCAAAACTCATTATTTTTATCGTGATATCGCGACTTAGACTTATAAG
CAGAACGCCCGCACATAAATAGTTCACATTACTTTTGTAGGTGTTGCGAGCGATTAAAAT
AAAATAAGTCAGATAGGGTCAAGGCCGGCAACGTCAACTATTCTACGTAAAAATGAAGAC
TTAAAAGTTCTGTACACAAATAAGAAAAAAAAGAATAATATTAAGTACATACATACGGCA
TATATTTAATTTAAAGATTAAAATTATTATTTTCTAGAAATTTAAATGAACTATAGCGTC
ATCTACCGAATTAGCCTGTAAAACCGGCTTGGCTGTTTGAGCGGAGTGGTTAACTAGGTG
CAAGCTGTTTTGCCGACGAAACATACGCCATTTTGCTATTATTCCAAGGGTTGCATTATC
TGTTCGTCAACAATGTAAAGTGAAATGTTTTCGAAGAATTTTCAGTGAATGTGATGAATA
AGTGTAGATCTCTATGTTGGAATAAAAACTAGGAGAATGGAGGAATCCAACGAAGAGTAT
AACGTAATTCCAGAACTCTACTTTCTGATAGCGAAATTTCTGTCTGGTGGTCCACTTAAG
GAAACTGCAAAGACACTGCTGAAAGAGCTCGAGACGATCGAGGTGCTGCCGCGGCGACTG
GACTGGCTGGGAACCGAACACACACAGTCCTATGAGGAACTTGCAAGCCAGCACTCCGAC
GTGCAGTGGCGGCGGCTGGCGGCCGTGTGCGAGCGCGCGCTGCGGCTGGACGGGCGGGG
(3659 bp)

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