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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoEE_comp65177_c0_seq1
Scaffold_idBomo_Chr24
NCBI non-redundant
(nr)		PREDICTED:_LOW_QUALITY_PROTEIN:_E3_ubiquitin-protein_ligase_RFWD2-like_[Plutella_xylostella]
Ontology
GO:0000139 C Golgi membrane
GO:0004842 F ubiquitin-protein transferase activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005813 C centrosome
GO:0005829 C cytosol
GO:0005925 C focal adhesion
GO:0008270 F zinc ion binding
GO:0010212 P response to ionizing radiation
GO:0016567 P protein ubiquitination
GO:0016607 C nuclear speck
GO:0016874 F ligase activity
GO:0032436 P positive regulation of proteasomal ubiquitin-dependent protein catabolic process
GO:0046872 F metal ion binding
GO:0061630 F ubiquitin protein ligase activity
Transcript
Level		FPKM:0.72 TPM:1.26
ORF EntryO_BomoEE11562_5prime_partial:A_BomoEE_comp65177_c0_seq1
Sequence
(Nucleotide)
AAGAGGGTTTTCGTGTCGTGCCGCTTTGTCGAAACATCTGCTTACTCCATTCAATAATTA
TTCCAATGCACTTAAGACGTCGATCTCATGTCTCAACATTATTGTGGATATTAAAGTCAT
GAGGTTTATGAACTACGAATACTTAAAAGTACCAGAGGGCTCTTGAACATAGATCTTATA
TTGAGAACTTCAATTATTCTTGGACCGAGGTAGTGATTCTTTCATGTGCCTACCGCTGCT
ACAGGCTGCCTGGGCACTAATGACTACTACTACTGCGGGGCGGTGCACATACCTGCGGAG
CCGAAGGCCAGGTGGCAGGACGAGTTGGGGTTGAAGCGCACGCAGCACACGTTGAACTTG
GCCTCGAGCGTGGCGACGGACTTCTCCTGGTTGAGCGCCCACAGCTTGACGCGCGCGTCG
TCGGAGCCCGAGGCCAGCAGGCGCACGTCGGCGCGGTTGAAGTGCACGGACCAGGCGCGC
TTGTCGTGCTCCTGCAGCGCGCGCGTGCGCACCGCCGTGCCCGCGTCCCACACCGACACC
GTGCCCTCGTAGTCCGACGACGCCAGCACGTGCTTGTGGTACTTGTTCCACGACACGCAC
GAGATCTTGTGCGAGCACTGCATCTCTGCGCACGGGTAGTGCACGTCCACCGCGTCGCGC
ACCACCGACTCGAACTCGAACACCTTGATCCTCTTGGTGACGCCGGCGATCGCGAAGAAC
TCCTCGTCCTTGTCGAACTCGATGGTGGACACGATCGTGGAGTAGTTGATGGCGTCGCTG
CAGTACGACAGCGTGGCCAGCGGCCGTAGCGTCCTGTAGGCGGTGAAAGCGACCAGGTCG
TCCCGGAAGGCGTCGAGTCCGGCGCGGGCTCGAGTGGAGCCGGCCTCCTCCATCTCCACG
GAGTCCTCGACCGCCACGCCCGCCACCGGCGCCCGCTGGTCCGACGGACCCGGTGCAGGA
GTTGGTTGCGGGTCGCACACCGGACCCTGCGGCACGTGGTCCGCCTCGCACGTGTACGGG
GCCGCCGAGGAGGGCACGGGGGTCACGGTGGGGGGTGCGGGGTAGGCGGGGACGGCGGGG
GACGCGGGGGTCAGCGACCCCGACCCCGGGAAGTACAGCTCGTCAGCGCGGTGCGCGAAG
TAACACTGCACGAAGTCGTCGAAGTGTTGCGTGAGCTTCCTCCAGCGCGCGGCCAGGGCG
TCCCCCCCGCCCCCCGCGCCGCCCGCGAAGCTCTCCTCCTCCGAGCACACCGCGCCCGCG
CTACCGTCAACATTGCTGGCCGTGTCTGCGAGGTTCCCGGCTATATCGGCGATCTCTTTC
CTGAGCGCAGTGACGGCGTCTGGGCGGGGGTCCGCGCCGCCGGGGGGCGAGGCCCCGCGC
GCTATCCCCACTGCACCCGTGCGGAGTTCCTTCAGCACTCCGGCGACGTACTCCATGTCC
TTGTGCACGAGGGCGGCCTCCCTGGCGAGCTGCTGCAGCTGGTGGGTGCGGTGGCGGTGC
AGGTGCGCCAGGAACTCGTACAGTAGCCGGTGCTGCGCCGCCGCGCACTCCGCCTCCAGC
AGTCTCTTCCGTCTGTTGAGCAGTTCCAACATGGAATCCACCTCGGTGAGGTCGAGGTGT
CGCGACTCCGCGGCGAGCAGCGAGCGCAGCCGGGCTCCCTCGCCGGCCGGGCCCGACCGG
GACGACGCCCTCGACCGGAGCCGGCGCTTCGTCACGAGTTCATTGAGCAGGAAGTTGGGG
AAGATGTGTTCTCTGGTGAGCAGGGGCGCTCCGCACTTGGGACAGCGCCGGTGCAGGTCG
AGCGCGCGGCTGATGCACGCGTAGCAGAACGAGTGGCCGCAGCGCGTCACATAGGCCTCG
TCGATCAGCTCGAAGCACACCGGGCACAGGAGCTCACAGTCCTTATCCTCAAGTGAGCCG
CCAAGTCCTCCGAGAGTGGTGGCCGTGCCAGAGCCTGCACTGCTGGCTGCGGCACCCGAC
ATTCCTATAAATACGATGTTGTTTAATTAAAATCACCGAAGATGCATCGCTCGATGGTTA
CTGTTCTTCTCTTGTTTTCAACGAACACAGAAGCACAAGTTAACGAAGCTTTATTGCACA
GTTGTGACTTAATGGAACTTAACGTTAGAAACAATTTTAAGAGTCTTTGAGTATTTAGTA
ACATCAAAACTCATTATTTTTATCGTGATATCGCGACTTAGACTTATAAGCAGAACGCCC
GCACATAAATAGTTCACATTACTTTTGTAGGTGTTGCGAGCGATTAAAATAAAATAAGTC
AGATAGGGTCAAGGCCGGCAACGTCAACTATTCTACGTAAAAATGAAGACTTAAAAGTTC
TGTACACAAATAAGAAAAAAAAGAATAATATTAAGTACATACATACGGCATATATTTAAT
TTAAAGATTAAAATTATTATTTTCTAGAAATTTAAATGAACTATAGCGTCATCTACCGAA
TTAGCCTGTAAAACCGGCTTGGCTGTTTGAGCGGAGTGGTTAACTAGGTGCAAGCTGTTT
TGCCGACGAAACATACGCCATTTTGCTATTATTCCAAGGGTTGCATTATCTGTTCGTCAA
CAATGTAAAGTGAAATGTTTTCGAAGAATTTTCAGTGAATGTGATGAATAAGTGTAGATC
TCTATGTTGGAATAAAAACTAGGAGAATGGAGGAATCCAACGAAGAGTATAACGTAATTC
CAGAACTCTACTTTCTGATAGCGAAATTTCTGTCTGGTGGTCCACTTAAGGAAACTGCAA
AGACACTGCTGAAAGAGCTCGAGACGATCGAGGTGCTGCCGCGGCGACTGGACTGGCTGG
GAACCGAACACACACAGTCCTATGAGGAACTTGCAAGCCAGCACTCCGACGTGCAGTGGC
GGCGGCTGGCGGCCGTGTGCGAGCGCGCGCTGCGGCTGGACGGGCGGGG
(2929 bp)

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