SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoEE_comp65145_c0_seq3
Scaffold_idBomo_Chr12
NCBI non-redundant
(nr)		PREDICTED:_DNA_repair_endonuclease_XPF_[Amyelois_transitella]
Ontology
GO:0000014 F single-stranded DNA endodeoxyribonuclease activity
GO:0000110 C nucleotide-excision repair factor 1 complex
GO:0000712 P resolution of meiotic recombination intermediates
GO:0000724 P double-strand break repair via homologous recombination
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003684 F damaged DNA binding
GO:0003697 F single-stranded DNA binding
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0006259 P DNA metabolic process
GO:0006281 P DNA repair
GO:0006289 P nucleotide-excision repair
GO:0006296 P nucleotide-excision repair, DNA incision, 5'-to lesion
GO:0006298 P mismatch repair
GO:0006302 P double-strand break repair
GO:0006310 P DNA recombination
GO:0006974 P cellular response to DNA damage stimulus
GO:0007095 P mitotic G2 DNA damage checkpoint signaling
GO:0007131 P reciprocal meiotic recombination
GO:0007143 P female meiotic nuclear division
GO:0016321 P female meiosis chromosome segregation
GO:0016787 F hydrolase activity
GO:0043234 C protein-containing complex
GO:0045132 P meiotic chromosome segregation
GO:0046982 F protein heterodimerization activity
GO:0051321 P meiotic cell cycle
GO:1901255 P nucleotide-excision repair involved in interstrand cross-link repair
Transcript
Level		FPKM:1.49 TPM:2.60
ORF EntryO_BomoEE11509_complete:A_BomoEE_comp65145_c0_seq3
Sequence
(Nucleotide)
CCGAAAATAAAAAAAGGGAGGCTAAATTCACTGAGCCCATATACTTCACTGGTATATACC
CGTACCATACCTATATTATGTATATATGTACTTATTACCTAAGTAAATATTATTCATTTG
ATTTGCCTACCTACTTTAACCAATATGAATGCAAAAATTCAGGAAGATGAAAATGTAGAA
AACACTGTTTCGAATCTAAAGAATAAGTTTCCCATGTTGTCATTCGAAAAGCAAATCTTC
ATTGATGTGTTTGAAAAAGATGCTCTTGTAATAATGGCAAAAGGCCATAATTACAACAAC
ATTGTGGCTAATTTGTTGTGGGTGCACAAGGATCCTGGTAATCTAGTTTTAGTTATAAAC
AGTAATGATAATGAAGAAAAATATTTTACTGAAAAAAATCAATTGACACCAGTACCCACA
CTTGGCAATGAAAGAGAGCGGTCGTATTTAGAGGGTGGAATTCATTTTGTATCAACTCGT
ATTTTGGTTGTGGATTTATTAAAAAACAGAGTGCCAATATCCCATATCACAGGCATTGTT
GTTCTAAGAGCACACACAGTCTTAGAATCATGTCAGGAAGCATTTGCATTGAGGTTGTAC
AGGCAGAAAAATAAGACTGGATTTATTAAAGCATTTTCTAATTCACCTATCTCTTTCACG
TTTGGATACCATCAAGTTGAGAAAGTTATGAGGGCGCTTTTTGTGACAGAACTATTTCTG
TGGCCAAGGTTTCATGGCAACATTATTAGAAATTTAAAGAGTAGACAAGCTCAAGCTGAA
GAACTTCACATTCCATTAACTACTAACATGAGCTACATTCAGACGTGTCTTCTTGACATT
ATGAACTACACTGTCAAACAATTGAAGAGCATTAACAGGTCTTTAGATATGAAAGAAATC
ACAACCGAGAATTGTATAACAAAGAAATTTCATAAGATCCTGCAATCGCAGCTGGATTGT
GTGTGGCATCAACTTAGTACAAGAACAAAGGAATACATACAAGACCTAAAAATTCTCAGG
AGCATGATTATTAACCTAATACACGATGACGCGGTGTCGTTATACGCGTTAGTCAGCAAG
TACCGAACTCCTGAATACGCACAAATAAATTCTGGTTGGATCCTGCTCGAGTCTGCGGAG
CAGCTGTTTAAATACGCCAAAGCACGTGTATTTAATAAAAAGAACGAATTCGATCCGGAG
CCTTCACCGAAATGGAAGTACTTAAGCGATTTGTTATCCCAAGAAATACCAGACGAAGTA
AACAAAAAGAAAGACAGTAACTTGAGCAACACTAAAATATTAATTCTCTGCCAAGACAAT
CGGACCTGTAGCCAGCTGAACCACTTCCTCACCATGGGGGCAAATAGATACCTGCTGTAC
ACGGCTTTCAAACGTGAGATCCCCATAAATGCAGTAGCGACAAAATACGAAGACATAAAA
AACACAGTTCCCGTAGAAACTAAAGATAAGACAGACAAAAAGTCGGATACAAAAGAAGGA
AAATCTACCGATGAAGGCACACGTTTGGATGACTCGAAATATGAAGAATTGAACACAGAA
GAATCGAGAACTAATTATCTGTTGACGCTAACACAAAGTTCAGCGCACTGCAGCAAAGAT
AATGCAACAGTTAATGAAAGTTTATTCGAACCCATTTCCCAGCTGGATAATTTAGATTTT
ACGAAAATCGAAGTAGAAACGCCCGTAATCTGCATCCAAACGTTCAAAGAAAACGGTAAC
AATCTCTCCTTGGAATACACTCTGGAAGCTTTGAGACCGGAATATGTTATACTGTATCAC
AGCGACGTGGCAGCTGTGCGCCAGCTGGAGATGTACGAGTGCAGAAAGAAACCGGAGGAG
CCGATCTGCAAAGTGTACTTCCTGATACACGATCAAACAGTTGAGGAGCAAGCCTATCTG
GCGGCATTGAAGAGAGAAAAACAAGCATTTGAATTGTTGATTCAGGCCAAAAGTGTCATG
GTAGTTCCTTCATATCAAGACGGAAAAACAGATGAATACTTCCAATTAACAAACGAGGAA
GAAGTGCAACCCACCGATTCAAGGAAAGCAGGTCAAAATCAAAGTAAAGAGAAACCGCTA
GTGATAGTGGACATGAGAGAGTTTCGATCAGACTTACCGTCGCTGTTGCACAAGAGAGGC
ATTAATATCGAACCAGTTACGATAGCGATAGGTGATTACATACTGACCCCTGATATTTGC
GTAGAAAGGAAATCTATATCCGATTTGATTGGATCGTTGAACTCTGGTCGCTTGTACACA
CAATGCACACAAATGTGCCGCAACTACAGTCGACCTATCCTGCTTATTGAATTTGATCAA
AATAAACCTTTTAATCTTCAGGGTCATTTCGTGGTATCAACAGATATATCTGGAGCGGAT
ATACAACAAAAACTACAACTTCTGACAATACATTTCCCTAGGCTGAAATTGGTATGGTCG
CCAAGTCCGTATGCTACTGCTGAACTTTTCTATGAATTAAAGCAAGGCAGAAATAATCCC
AATATTGCAGAAGCTATCGCTCTCAGTGGTGAAAATACCGCAGATGATATGAACTATGAG
AGATACAATATATTGGTTCATGATTTCGTACAAAAACTACCTGGTGTTACATCAAAAAAC
ATTAACAGAATTATGAACAAAGGTATCTCACTGGACCACTTGATAACTCTTACCAAAGAG
GAATTATCTGATGTCGTAGAAAACAAAAATGAAGCCGAAACACTGTATTCAATACTTCAC
GTCAAAGCTCGTCCCATGGATGCCAAAGAAGAGAAATTCGGAAAGAAAAAGTTCACTGGA
AAACTATATCGTAGTAAAAAATAATGTACATATTAGATGTTATTACATAGTAATTTATTA
AAACTTAATTATGAATCATTAATAAATTAATGTTACCAATTTACAAAATAATAAATCATT
TTTTAAATAAAGACTAATAATTTTTTCATGATGTAAGAATATCGTCATGTAGAATATTAT
TTTATGATGTGACAAATATTTATCGCCAAGGACGATATTGGTGCTCCTTGTCAGTTAATG
GAACATAAATCACACTCATTAATTTCTTTACAGTTGTTGTTCCATCCTGTGCTTTATCAA
CCTGAGTCAAATGTTGTTCACCACCCTCAGGCCCTACAGGAACTATTAGCCTCCCTCCCG
GTTTCAATTGATCAATTAGAGCTTGTGGTAATGTGGGTGCTGCAGCCCCGACATGAATTG
CACTGTAAGGGGCTTCAGATGGATAACCGAGACGACCATCACCAACATGTGGGGAGCGCT
GATTGTTGCAGAGAATCCAATAGATTGAGGAGAGTCCTGGTATGGAGAAGAAGGACAGTA
ATTTTTCCGATCAACAGCTAGCATTGCATTTGCGACGGTGTCCGATTTTATTATGCCGTT
AGTTCTTAAATTACGTATTAGGTCCACATTATTTGCTCCGTGGCTTCTCCATGCCATTAT
TATTGGAATTATTACAATAACTGCTAAACAAATGTTTTTAATCCATGTATATTTATTTTT
CATTAATGTTTAAATTATTCCTTCTTTATTGGTGGTAGTAAATATTCGGATTTCTGTGTA
ATATCTGTAAATG
(3613 bp)

- SilkBase 1999-2023 -