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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoEE_comp33848_c0_seq1
Scaffold_idBomo_Chr15
NCBI non-redundant
(nr)		PREDICTED:_probable_ATP-dependent_RNA_helicase_DDX23_[Amyelois_transitella]
Ontology
GO:0000166 F nucleotide binding
GO:0000354 P cis assembly of pre-catalytic spliceosome
GO:0000375 P RNA splicing, via transesterification reactions
GO:0000398 P mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0004004 F RNA helicase activity
GO:0004386 F helicase activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005682 C U5 snRNP
GO:0005730 C nucleolus
GO:0006397 P mRNA processing
GO:0008026 F helicase activity
GO:0008380 P RNA splicing
GO:0010501 P RNA secondary structure unwinding
GO:0016787 F hydrolase activity
GO:0044822 F RNA binding
GO:0070062 C extracellular exosome
GO:0071013 C catalytic step 2 spliceosome
Transcript
Level		FPKM:39.33 TPM:68.59
ORF EntryO_BomoEE2301_complete:A_BomoEE_comp33848_c0_seq1
Sequence
(Nucleotide)
GGGCCATTTGACAGTTCATAAATTATGTTAATGTCAAAATTGACAAAAATGTGACATTGA
AGTTGTTCACATACTGCTACATTTTGTACATGAAAAATACACCGAATTTAATTTTATTGT
ATTTGCTGTATAATACCTATAAAGAAATTAACAAAATAAAAACCGGTGGTTCCATAAACC
AAAAATGGCCCGAGACAGAAGTCCTGAACGGCGGAGGTCAAGATCACGAGATAGAAGAGA
TCGGGATCGTTACGATGAACGCGAATCGTATCGTGAAAAAGTAAAGCGCAGGGACAGGTC
TAAAAGCCCTAAAAAAGATGCGGATAAAGCTCGAAGCCCTTCTAGAAAAGATCGCGATCG
TTCTAGGAGTCCACTACGTAAAGAACGCGGTCGTTCGCGCAGCCCTAAGAAACGTGACGG
CAAAGACAAAGATCGACGTTACGAAGACAAGGAAAAGAGTAGATCAAAAAAAGAAGATGA
AATGGAGGAAGACACTGCAGACATGAAGAAAGAGGATGAATCCATAGATAAAAAACCAAT
TAAAAAAGAGCCTTTGTCCTTAGAAGAACTACTTGCTAAGAAAAAGGCTGAGGAAGAAGC
CCGCAGTAAGCCAGTATTTCTTACCAAAGAGCAACGAGCACAGATAGCTTTGGAGAAACG
GCGTCAAGAAGTAGAAGCTATAAGAGCTAATACTGATAAGCCTCAAGTCACTATTGATTT
AACAGGTCCGTCAAGACGGGAAGAAGATAAAAGGCACAGAGAAGAACGTGAAAAAGATAG
AGAAAAGGAACGTCGAGAGGAACGGGAAAGGAAATATGAAGAGAGGAAAGCCTATTCAGA
TCGTCGAGAACCAAAAAAAGATAATGAAGAGACATCTAAAACAAAAGATAAAGAAAGAGA
AGAAGAGGCTATTAAAGCTCGTTACTTAGGTATAGTAAAGAAAAAGCGTAGAGTAAGACG
GCTGAATGACAGGAAATTTGTTTTTGACTGGGATGCGTCAGAAGATACATCAAATGATTA
TAATGTTTTGTACAAAGAAAGACATCAAGTACAATTCTTTGGTCGTGGACACATTGCTGG
TATAGATATCAAGTCTCAAAAGAAAGACCATAGCAAATTCTATGGGAATCTTTTAGAAAA
GCGCAGAACTGAGTTAGAGAAAGAACAAGAAAAACTACGCTTGAAGAAAGTGAAGAAGAA
GGAAGACAAGCAAAAGTGGGATGATAGACACTGGTCTGAGAAAGATGTGGATGAGATGAC
AGAGCGTGATTGGAGGATATTCAGGGAAGACTACAATATTACCTTAAAAGGAGGTAAAAT
TCCTAACCCTATACGTTCTTGGAAGGAAGCTCCCTTGCATACTGACATTATGGACATAAT
CAACAAAGTTGGATATAAGAGCCCAACTCCTATTCAAAGGCAGGCTATTCCAATTGGATT
ACAGAACCGTGACATTATTGGTGTTGCTGAAACTGGTTCCGGTAAAACATTGGCATTCCT
TATACCATTACTTACATGGATTCAATCTCTGCCAAAGAGTGAACGTATGGAAGATGCTGA
CCAAGGACCTTATGCTATAATTTTAGCTCCAACACGTGAATTGGCTCAACAAATCGAAGA
AGAAACTAATAAATTTGGTATTCCTCTTGGTATCACATCAGTAGTGGTTGTTGGAGGTTT
ATCTCGTGAAGAACAAGGTTTTAAGCTGAGGTTAGGCTGTGAGATTGTCATTGCCACTCC
CGGTCGTCTTATTGATGTCTTAGACAACAGATATTTAGTACTAAACCGTTGTACCTATGT
TGTTCTTGATGAAGCTGATCGGATGATTGATATGGGTTTTGAACCGGATGTTCAAAAAAT
CCTGGAATACATGCCTGTATCGAACATAAAACCTGATAGTGATGCAGCTGAAGATGCTTC
AGTATTGCTTGCCAATTATAACACAAAAAAGAAATACCGACAAACTGTGATGTTTACGGC
AACAATGCCTCCGGCTGTAGAGCGGCTGGCTAGAAGTTATCTCAGAAGACCGGCTATTGT
ATATATTGGATCTGTAGGAAAACCAGTAGACAGAACTGAACAAATAGTCTACATGATAGG
CGAGAATGAAAAACGTAGAAAACTTACAGAGATTTTGCAGCGTGGTGTCGAACCACCCAT
TATTATTTTTGTTAACCAGAAAAAAGGTGCAGATGTTCTTGCAAAGGGACTTGAAAAACT
TGGTTTCAATGCCTGTACGCTGCATGGTGGTAAAGGCCAAGAACAACGTGACTTTGCACT
TGCCAGTCTCAAAGGGGGCGCTAAAGATATCCTCGTGGCGACAGACGTGGCAGGTCGTGG
TATTGACATTAAAGATGTCAGTATGGTCATTAATTACGATATGGCGAAGACTATTGAAGA
CTACACTCATCGTATCGGCCGTACCGGTCGTGCAGGAAAAACTGGTAAAGCTATGTCCTT
TGTTACAAAAGAAGACTCCGCATTGTTCTATGATCTGAAGCAGGTTTTGTTGGCAAGTTC
CGTATCTACGTGTCCACCGGAACTTATGAACCACCCTGAGGCTCAACATAAGCCAGGGAC
AGTCGTAACAAAGAAGAGACGTGAAGAGATGATATTCGCTTGACAATCCTAGTTATAGTC
TAAAATAATAAGCAATAGGTAAATTACCATCATGGTCACCAGCAAGTTATAAAGTCTATA
GTTACTTTAGTTCTAACACATTTTAAACATCCACTTTTAGAATCAAAAGAATGTAATTTT
AACTAAAATTCGTATATATTTCGAGAAATAAAAACAATAATCAAATAAAAAAAAAAAA
(2818 bp)

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